{"id":"https://openalex.org/W4213146877","doi":"https://doi.org/10.1093/bioinformatics/btac115","title":"\u00b5ProteInS\u2014a proteogenomics pipeline for finding novel bacterial microproteins encoded by small ORFs","display_name":"\u00b5ProteInS\u2014a proteogenomics pipeline for finding novel bacterial microproteins encoded by small ORFs","publication_year":2022,"publication_date":"2022-02-18","ids":{"openalex":"https://openalex.org/W4213146877","doi":"https://doi.org/10.1093/bioinformatics/btac115","pmid":"https://pubmed.ncbi.nlm.nih.gov/35188179"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btac115","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btac115","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/38/9/2612/49873952/btac115.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/38/9/2612/49873952/btac115.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5028295827","display_name":"Eduardo Vieira de Souza","orcid":"https://orcid.org/0000-0003-2773-8550"},"institutions":[{"id":"https://openalex.org/I1307098950","display_name":"Salk Institute for Biological Studies","ror":"https://ror.org/03xez1567","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1307098950"]},{"id":"https://openalex.org/I45643870","display_name":"Pontif\u00edcia Universidade Cat\u00f3lica do Rio Grande do Sul","ror":"https://ror.org/025vmq686","country_code":"BR","type":"education","lineage":["https://openalex.org/I45643870"]}],"countries":["BR","US"],"is_corresponding":false,"raw_author_name":"Eduardo Vieira de Souza","raw_affiliation_strings":["Clayton Foundation Laboratories for Peptide Biology, Salk Institute for Biological Studies , La Jolla, CA, USA","Instituto Nacional de Ci\u00eancia e Tecnologia em Tuberculose, Centro de Pesquisas em Biologia Molecular e Funcional (CPBMF), Pontif\u00edcia Universidade Cat\u00f3lica do Rio Grande do Sul (PUCRS), 90619-900, Partenon , Porto Alegre, Brazil","Programa de P\u00f3s-Gradua\u00e7\u00e3o em Biologia Celular e Molecular, Escola de Ci\u00eancias da Sa\u00fade e da Vida, PUCRS, Partenon , Porto Alegre, Brazil"],"affiliations":[{"raw_affiliation_string":"Clayton Foundation Laboratories for Peptide Biology, Salk Institute for Biological Studies , La Jolla, CA, USA","institution_ids":["https://openalex.org/I1307098950"]},{"raw_affiliation_string":"Instituto Nacional de Ci\u00eancia e Tecnologia em Tuberculose, Centro de Pesquisas em Biologia Molecular e Funcional (CPBMF), Pontif\u00edcia Universidade Cat\u00f3lica do Rio Grande do Sul (PUCRS), 90619-900, Partenon , Porto Alegre, Brazil","institution_ids":["https://openalex.org/I45643870"]},{"raw_affiliation_string":"Programa de P\u00f3s-Gradua\u00e7\u00e3o em Biologia Celular e Molecular, Escola de Ci\u00eancias da Sa\u00fade e da Vida, PUCRS, Partenon , Porto Alegre, Brazil","institution_ids":["https://openalex.org/I45643870"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026185844","display_name":"Pedro Ferrari Dalberto","orcid":"https://orcid.org/0000-0002-0929-6739"},"institutions":[{"id":"https://openalex.org/I45643870","display_name":"Pontif\u00edcia Universidade Cat\u00f3lica do Rio Grande do Sul","ror":"https://ror.org/025vmq686","country_code":"BR","type":"education","lineage":["https://openalex.org/I45643870"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Pedro Ferrari Dalberto","raw_affiliation_strings":["Instituto Nacional de Ci\u00eancia e Tecnologia em Tuberculose, Centro de Pesquisas em Biologia Molecular e Funcional (CPBMF), Pontif\u00edcia Universidade Cat\u00f3lica do Rio Grande do Sul (PUCRS), 90619-900, Partenon , Porto Alegre, Brazil"],"affiliations":[{"raw_affiliation_string":"Instituto Nacional de Ci\u00eancia e Tecnologia em Tuberculose, Centro de Pesquisas em Biologia Molecular e Funcional (CPBMF), Pontif\u00edcia Universidade Cat\u00f3lica do Rio Grande do Sul (PUCRS), 90619-900, Partenon , Porto Alegre, Brazil","institution_ids":["https://openalex.org/I45643870"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5024096372","display_name":"Vinicius Pellisoli Machado","orcid":"https://orcid.org/0000-0002-2255-8182"},"institutions":[{"id":"https://openalex.org/I45643870","display_name":"Pontif\u00edcia Universidade Cat\u00f3lica do Rio Grande do Sul","ror":"https://ror.org/025vmq686","country_code":"BR","type":"education","lineage":["https://openalex.org/I45643870"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Vinicius Pellisoli Machado","raw_affiliation_strings":["Instituto Nacional de Ci\u00eancia e Tecnologia em Tuberculose, Centro de Pesquisas em Biologia Molecular e Funcional (CPBMF), Pontif\u00edcia Universidade Cat\u00f3lica do Rio Grande do Sul (PUCRS), 90619-900, Partenon , Porto Alegre, Brazil"],"affiliations":[{"raw_affiliation_string":"Instituto Nacional de Ci\u00eancia e Tecnologia em Tuberculose, Centro de Pesquisas em Biologia Molecular e Funcional (CPBMF), Pontif\u00edcia Universidade Cat\u00f3lica do Rio Grande do Sul (PUCRS), 90619-900, Partenon , Porto Alegre, Brazil","institution_ids":["https://openalex.org/I45643870"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5042990989","display_name":"Adriana C. Miranda","orcid":"https://orcid.org/0000-0002-1441-7793"},"institutions":[{"id":"https://openalex.org/I45643870","display_name":"Pontif\u00edcia Universidade Cat\u00f3lica do Rio Grande do Sul","ror":"https://ror.org/025vmq686","country_code":"BR","type":"education","lineage":["https://openalex.org/I45643870"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Adriana Canedo","raw_affiliation_strings":["Instituto Nacional de Ci\u00eancia e Tecnologia em Tuberculose, Centro de Pesquisas em Biologia Molecular e Funcional (CPBMF), Pontif\u00edcia Universidade Cat\u00f3lica do Rio Grande do Sul (PUCRS), 90619-900, Partenon , Porto Alegre, Brazil"],"affiliations":[{"raw_affiliation_string":"Instituto Nacional de Ci\u00eancia e Tecnologia em Tuberculose, Centro de Pesquisas em Biologia Molecular e Funcional (CPBMF), Pontif\u00edcia Universidade Cat\u00f3lica do Rio Grande do Sul (PUCRS), 90619-900, Partenon , Porto Alegre, Brazil","institution_ids":["https://openalex.org/I45643870"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5065981856","display_name":"Alan Saghatelian","orcid":"https://orcid.org/0000-0002-0427-563X"},"institutions":[{"id":"https://openalex.org/I1307098950","display_name":"Salk Institute for Biological Studies","ror":"https://ror.org/03xez1567","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1307098950"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Alan Saghatelian","raw_affiliation_strings":["Clayton Foundation Laboratories for Peptide Biology, Salk Institute for Biological Studies , La Jolla, CA, USA"],"affiliations":[{"raw_affiliation_string":"Clayton Foundation Laboratories for Peptide Biology, Salk Institute for Biological Studies , La Jolla, CA, USA","institution_ids":["https://openalex.org/I1307098950"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073955262","display_name":"Pablo Machado","orcid":"https://orcid.org/0000-0001-5616-9583"},"institutions":[{"id":"https://openalex.org/I45643870","display_name":"Pontif\u00edcia Universidade Cat\u00f3lica do Rio Grande do Sul","ror":"https://ror.org/025vmq686","country_code":"BR","type":"education","lineage":["https://openalex.org/I45643870"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Pablo Machado","raw_affiliation_strings":["Instituto Nacional de Ci\u00eancia e Tecnologia em Tuberculose, Centro de Pesquisas em Biologia Molecular e Funcional (CPBMF), Pontif\u00edcia Universidade Cat\u00f3lica do Rio Grande do Sul (PUCRS), 90619-900, Partenon , Porto Alegre, Brazil","Programa de P\u00f3s-Gradua\u00e7\u00e3o em Biologia Celular e Molecular, Escola de Ci\u00eancias da Sa\u00fade e da Vida, PUCRS, Partenon , Porto Alegre, Brazil","Programa de P\u00f3s-Gradua\u00e7\u00e3o em Medicina e Ci\u00eancias da Sa\u00fade, Escola de Medicina, PUCRS, Partenon , Porto Alegre, Brazil"],"affiliations":[{"raw_affiliation_string":"Instituto Nacional de Ci\u00eancia e Tecnologia em Tuberculose, Centro de Pesquisas em Biologia Molecular e Funcional (CPBMF), Pontif\u00edcia Universidade Cat\u00f3lica do Rio Grande do Sul (PUCRS), 90619-900, Partenon , Porto Alegre, Brazil","institution_ids":["https://openalex.org/I45643870"]},{"raw_affiliation_string":"Programa de P\u00f3s-Gradua\u00e7\u00e3o em Biologia Celular e Molecular, Escola de Ci\u00eancias da Sa\u00fade e da Vida, PUCRS, Partenon , Porto Alegre, Brazil","institution_ids":["https://openalex.org/I45643870"]},{"raw_affiliation_string":"Programa de P\u00f3s-Gradua\u00e7\u00e3o em Medicina e Ci\u00eancias da Sa\u00fade, Escola de Medicina, PUCRS, Partenon , Porto Alegre, Brazil","institution_ids":["https://openalex.org/I45643870"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5081756364","display_name":"Luiz Augusto Basso","orcid":"https://orcid.org/0000-0003-0903-2407"},"institutions":[{"id":"https://openalex.org/I45643870","display_name":"Pontif\u00edcia Universidade Cat\u00f3lica do Rio Grande do Sul","ror":"https://ror.org/025vmq686","country_code":"BR","type":"education","lineage":["https://openalex.org/I45643870"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Luiz Augusto Basso","raw_affiliation_strings":["Instituto Nacional de Ci\u00eancia e Tecnologia em Tuberculose, Centro de Pesquisas em Biologia Molecular e Funcional (CPBMF), Pontif\u00edcia Universidade Cat\u00f3lica do Rio Grande do Sul (PUCRS), 90619-900, Partenon , Porto Alegre, Brazil","Programa de P\u00f3s-Gradua\u00e7\u00e3o em Biologia Celular e Molecular, Escola de Ci\u00eancias da Sa\u00fade e da Vida, PUCRS, Partenon , Porto Alegre, Brazil","Programa de P\u00f3s-Gradua\u00e7\u00e3o em Medicina e Ci\u00eancias da Sa\u00fade, Escola de Medicina, PUCRS, Partenon , Porto Alegre, Brazil"],"affiliations":[{"raw_affiliation_string":"Instituto Nacional de Ci\u00eancia e Tecnologia em Tuberculose, Centro de Pesquisas em Biologia Molecular e Funcional (CPBMF), Pontif\u00edcia Universidade Cat\u00f3lica do Rio Grande do Sul (PUCRS), 90619-900, Partenon , Porto Alegre, Brazil","institution_ids":["https://openalex.org/I45643870"]},{"raw_affiliation_string":"Programa de P\u00f3s-Gradua\u00e7\u00e3o em Biologia Celular e Molecular, Escola de Ci\u00eancias da Sa\u00fade e da Vida, PUCRS, Partenon , Porto Alegre, Brazil","institution_ids":["https://openalex.org/I45643870"]},{"raw_affiliation_string":"Programa de P\u00f3s-Gradua\u00e7\u00e3o em Medicina e Ci\u00eancias da Sa\u00fade, Escola de Medicina, PUCRS, Partenon , Porto Alegre, Brazil","institution_ids":["https://openalex.org/I45643870"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5054271745","display_name":"Cristiano Valim Bizarro","orcid":"https://orcid.org/0000-0002-2609-8996"},"institutions":[{"id":"https://openalex.org/I45643870","display_name":"Pontif\u00edcia Universidade Cat\u00f3lica do Rio Grande do Sul","ror":"https://ror.org/025vmq686","country_code":"BR","type":"education","lineage":["https://openalex.org/I45643870"]}],"countries":["BR"],"is_corresponding":true,"raw_author_name":"Cristiano Valim Bizarro","raw_affiliation_strings":["Instituto Nacional de Ci\u00eancia e Tecnologia em Tuberculose, Centro de Pesquisas em Biologia Molecular e Funcional (CPBMF), Pontif\u00edcia Universidade Cat\u00f3lica do Rio Grande do Sul (PUCRS), 90619-900, Partenon , Porto Alegre, Brazil","Programa de P\u00f3s-Gradua\u00e7\u00e3o em Biologia Celular e Molecular, Escola de Ci\u00eancias da Sa\u00fade e da Vida, PUCRS, Partenon , Porto Alegre, Brazil"],"affiliations":[{"raw_affiliation_string":"Instituto Nacional de Ci\u00eancia e Tecnologia em Tuberculose, Centro de Pesquisas em Biologia Molecular e Funcional (CPBMF), Pontif\u00edcia Universidade Cat\u00f3lica do Rio Grande do Sul (PUCRS), 90619-900, Partenon , Porto Alegre, Brazil","institution_ids":["https://openalex.org/I45643870"]},{"raw_affiliation_string":"Programa de P\u00f3s-Gradua\u00e7\u00e3o em Biologia Celular e Molecular, Escola de Ci\u00eancias da Sa\u00fade e da Vida, PUCRS, Partenon , Porto Alegre, Brazil","institution_ids":["https://openalex.org/I45643870"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5054271745"],"corresponding_institution_ids":["https://openalex.org/I45643870"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":1.6977,"has_fulltext":true,"cited_by_count":10,"citation_normalized_percentile":{"value":0.83039809,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":96,"max":98},"biblio":{"volume":"38","issue":"9","first_page":"2612","last_page":"2614"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11048","display_name":"Bacteriophages and microbial interactions","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11048","display_name":"Bacteriophages and microbial interactions","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/orfs","display_name":"ORFS","score":0.9471597671508789},{"id":"https://openalex.org/keywords/proteogenomics","display_name":"Proteogenomics","score":0.9284297823905945},{"id":"https://openalex.org/keywords/python","display_name":"Python (programming language)","score":0.6220223903656006},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5677624940872192},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.5602831840515137},{"id":"https://openalex.org/keywords/open-reading-frame","display_name":"Open reading frame","score":0.5414112210273743},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5356791615486145},{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.46088409423828125},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.4430598020553589},{"id":"https://openalex.org/keywords/mit-license","display_name":"MIT License","score":0.44150134921073914},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.41089409589767456},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3974139392375946},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.30340155959129333},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.225426584482193},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.22212404012680054},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.20257455110549927},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.12283048033714294},{"id":"https://openalex.org/keywords/peptide-sequence","display_name":"Peptide sequence","score":0.1144445538520813}],"concepts":[{"id":"https://openalex.org/C2780530800","wikidata":"https://www.wikidata.org/wiki/Q7072921","display_name":"ORFS","level":5,"score":0.9471597671508789},{"id":"https://openalex.org/C145741570","wikidata":"https://www.wikidata.org/wiki/Q7251534","display_name":"Proteogenomics","level":5,"score":0.9284297823905945},{"id":"https://openalex.org/C519991488","wikidata":"https://www.wikidata.org/wiki/Q28865","display_name":"Python (programming language)","level":2,"score":0.6220223903656006},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5677624940872192},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.5602831840515137},{"id":"https://openalex.org/C47289529","wikidata":"https://www.wikidata.org/wiki/Q908550","display_name":"Open reading frame","level":4,"score":0.5414112210273743},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5356791615486145},{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.46088409423828125},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.4430598020553589},{"id":"https://openalex.org/C174183944","wikidata":"https://www.wikidata.org/wiki/Q334661","display_name":"MIT License","level":3,"score":0.44150134921073914},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.41089409589767456},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3974139392375946},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.30340155959129333},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.225426584482193},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.22212404012680054},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.20257455110549927},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.12283048033714294},{"id":"https://openalex.org/C167625842","wikidata":"https://www.wikidata.org/wiki/Q899763","display_name":"Peptide sequence","level":3,"score":0.1144445538520813}],"mesh":[{"descriptor_ui":"D000071696","descriptor_name":"Proteogenomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D000071696","descriptor_name":"Proteogenomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D000071696","descriptor_name":"Proteogenomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016366","descriptor_name":"Open Reading Frames","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016366","descriptor_name":"Open Reading Frames","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016366","descriptor_name":"Open Reading Frames","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1093/bioinformatics/btac115","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btac115","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/38/9/2612/49873952/btac115.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:35188179","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/35188179","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:meriva.pucrs.br:10923/24135","is_oa":true,"landing_page_url":"https://hdl.handle.net/10923/24135","pdf_url":null,"source":{"id":"https://openalex.org/S4377196369","display_name":"PUCRS Repository (Pontifical Catholic University of Rio Grande do Sul)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I45643870","host_organization_name":"Pontif\u00edcia Universidade Cat\u00f3lica do Rio Grande do Sul","host_organization_lineage":["https://openalex.org/I45643870"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-sa","license_id":"https://openalex.org/licenses/cc-by-nc-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Article"},{"id":"pmh:oai:meriva.pucrs.br:10923/25221","is_oa":true,"landing_page_url":"https://hdl.handle.net/10923/25221","pdf_url":null,"source":{"id":"https://openalex.org/S4377196369","display_name":"PUCRS Repository (Pontifical Catholic University of Rio Grande do Sul)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I45643870","host_organization_name":"Pontif\u00edcia Universidade Cat\u00f3lica do Rio Grande do Sul","host_organization_lineage":["https://openalex.org/I45643870"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-sa","license_id":"https://openalex.org/licenses/cc-by-nc-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Article"},{"id":"pmh:oai:meriva.pucrs.br:10923/25483","is_oa":true,"landing_page_url":"https://hdl.handle.net/10923/25483","pdf_url":null,"source":{"id":"https://openalex.org/S4377196369","display_name":"PUCRS Repository (Pontifical Catholic University of Rio Grande do Sul)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I45643870","host_organization_name":"Pontif\u00edcia Universidade Cat\u00f3lica do Rio Grande do Sul","host_organization_lineage":["https://openalex.org/I45643870"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-sa","license_id":"https://openalex.org/licenses/cc-by-nc-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btac115","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btac115","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/38/9/2612/49873952/btac115.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G120275728","display_name":null,"funder_award_id":"Univer","funder_id":"https://openalex.org/F4320322025","funder_display_name":"Conselho Nacional de Desenvolvimento Cient\u00edfico e Tecnol\u00f3gico"},{"id":"https://openalex.org/G1225096374","display_name":null,"funder_award_id":"Finance Code 00","funder_id":"https://openalex.org/F4320321091","funder_display_name":"Coordena\u00e7\u00e3o de Aperfei\u00e7oamento de Pessoal de N\u00edvel Superior"},{"id":"https://openalex.org/G1356141106","display_name":null,"funder_award_id":"14.2.0914.1","funder_id":"https://openalex.org/F4320329820","funder_display_name":"Banco Nacional de Desenvolvimento Econ\u00f4mico e Social"},{"id":"https://openalex.org/G1429890386","display_name":null,"funder_award_id":"(CNPq","funder_id":"https://openalex.org/F4320322025","funder_display_name":"Conselho Nacional de Desenvolvimento Cient\u00edfico e Tecnol\u00f3gico"},{"id":"https://openalex.org/G1589553732","display_name":null,"funder_award_id":"unknown","funder_id":"https://openalex.org/F4320322025","funder_display_name":"Conselho Nacional de Desenvolvimento Cient\u00edfico e Tecnol\u00f3gico"},{"id":"https://openalex.org/G1837441638","display_name":null,"funder_award_id":"FAPERGS","funder_id":"https://openalex.org/F4320322025","funder_display_name":"Conselho Nacional de Desenvolvimento Cient\u00edfico e Tecnol\u00f3gico"},{"id":"https://openalex.org/G2526257416","display_name":null,"funder_award_id":"520182/99-5","funder_id":"https://openalex.org/F4320322025","funder_display_name":"Conselho Nacional de Desenvolvimento Cient\u00edfico e Tecnol\u00f3gico"},{"id":"https://openalex.org/G2554800379","display_name":null,"funder_award_id":"Code 001","funder_id":"https://openalex.org/F4320322502","funder_display_name":"Funda\u00e7\u00e3o de Amparo \u00e0 Pesquisa do Estado do Rio Grande do Sul"},{"id":"https://openalex.org/G289819648","display_name":null,"funder_award_id":"Brazil (CNPq)","funder_id":"https://openalex.org/F4320322025","funder_display_name":"Conselho Nacional de Desenvolvimento Cient\u00edfico e Tecnol\u00f3gico"},{"id":"https://openalex.org/G3204208367","display_name":null,"funder_award_id":"305203/2018-5","funder_id":"https://openalex.org/F4320322025","funder_display_name":"Conselho Nacional de Desenvolvimento Cient\u00edfico e Tecnol\u00f3gico"},{"id":"https://openalex.org/G3288294548","display_name":null,"funder_award_id":"Code 001.","funder_id":"https://openalex.org/F4320321091","funder_display_name":"Coordena\u00e7\u00e3o de Aperfei\u00e7oamento de Pessoal de N\u00edvel Superior"},{"id":"https://openalex.org/G3331681876","display_name":null,"funder_award_id":"CAPES","funder_id":"https://openalex.org/F4320322025","funder_display_name":"Conselho Nacional de Desenvolvimento Cient\u00edfico e Tecnol\u00f3gico"},{"id":"https://openalex.org/G3421998845","display_name":null,"funder_award_id":"Finance Code 001.","funder_id":"https://openalex.org/F4320321091","funder_display_name":"Coordena\u00e7\u00e3o de Aperfei\u00e7oamento de Pessoal de N\u00edvel Superior"},{"id":"https://openalex.org/G3476058532","display_name":null,"funder_award_id":"unknown","funder_id":"https://openalex.org/F4320321091","funder_display_name":"Coordena\u00e7\u00e3o de Aperfei\u00e7oamento de Pessoal de N\u00edvel Superior"},{"id":"https://openalex.org/G3601516360","display_name":null,"funder_award_id":"Brazil","funder_id":"https://openalex.org/F4320322025","funder_display_name":"Conselho Nacional de Desenvolvimento Cient\u00edfico e Tecnol\u00f3gico"},{"id":"https://openalex.org/G3883789297","display_name":null,"funder_award_id":"Code 00","funder_id":"https://openalex.org/F4320321091","funder_display_name":"Coordena\u00e7\u00e3o de Aperfei\u00e7oamento de Pessoal de N\u00edvel Superior"},{"id":"https://openalex.org/G3914732244","display_name":null,"funder_award_id":"2018-5","funder_id":"https://openalex.org/F4320321091","funder_display_name":"Coordena\u00e7\u00e3o de Aperfei\u00e7oamento de Pessoal de N\u00edvel Superior"},{"id":"https://openalex.org/G3938906640","display_name":null,"funder_award_id":"(CAPES)","funder_id":"https://openalex.org/F4320321091","funder_display_name":"Coordena\u00e7\u00e3o de Aperfei\u00e7oamento de Pessoal de N\u00edvel Superior"},{"id":"https://openalex.org/G4290566704","display_name":null,"funder_award_id":"421703-2017-2","funder_id":"https://openalex.org/F4320321091","funder_display_name":"Coordena\u00e7\u00e3o de Aperfei\u00e7oamento de Pessoal de N\u00edvel Superior"},{"id":"https://openalex.org/G4332196409","display_name":null,"funder_award_id":"Finance_Code_001","funder_id":"https://openalex.org/F4320321091","funder_display_name":"Coordena\u00e7\u00e3o de Aperfei\u00e7oamento de Pessoal de N\u00edvel Superior"},{"id":"https://openalex.org/G4899019422","display_name":null,"funder_award_id":"17-1265-8","funder_id":"https://openalex.org/F4320322502","funder_display_name":"Funda\u00e7\u00e3o de Amparo \u00e0 Pesquisa do Estado do Rio Grande do Sul"},{"id":"https://openalex.org/G5079005330","display_name":null,"funder_award_id":"support","funder_id":"https://openalex.org/F4320322025","funder_display_name":"Conselho Nacional de Desenvolvimento Cient\u00edfico e Tecnol\u00f3gico"},{"id":"https://openalex.org/G5353057333","display_name":null,"funder_award_id":"421703-2017-2","funder_id":"https://openalex.org/F4320322025","funder_display_name":"Conselho Nacional de Desenvolvimento Cient\u00edfico e Tecnol\u00f3gico"},{"id":"https://openalex.org/G5370821723","display_name":null,"funder_award_id":"2017-2","funder_id":"https://openalex.org/F4320322025","funder_display_name":"Conselho Nacional de Desenvolvimento Cient\u00edfico e Tecnol\u00f3gico"},{"id":"https://openalex.org/G5452421812","display_name":null,"funder_award_id":"CAPES/","funder_id":"https://openalex.org/F4320321091","funder_display_name":"Coordena\u00e7\u00e3o de Aperfei\u00e7oamento de Pessoal de N\u00edvel Superior"},{"id":"https://openalex.org/G5511893307","display_name":null,"funder_award_id":"(CAPES)-Finance Code 001","funder_id":"https://openalex.org/F4320321091","funder_display_name":"Coordena\u00e7\u00e3o de Aperfei\u00e7oamento de Pessoal de N\u00edvel Superior"},{"id":"https://openalex.org/G5696276328","display_name":null,"funder_award_id":"Finance","funder_id":"https://openalex.org/F4320321091","funder_display_name":"Coordena\u00e7\u00e3o de Aperfei\u00e7oamento de Pessoal de N\u00edvel Superior"},{"id":"https://openalex.org/G6515092298","display_name":null,"funder_award_id":"Finance Code 001","funder_id":"https://openalex.org/F4320321091","funder_display_name":"Coordena\u00e7\u00e3o de Aperfei\u00e7oamento de Pessoal de N\u00edvel Superior"},{"id":"https://openalex.org/G6616257599","display_name":null,"funder_award_id":"INCT-TB","funder_id":"https://openalex.org/F4320322025","funder_display_name":"Conselho Nacional de Desenvolvimento Cient\u00edfico e Tecnol\u00f3gico"},{"id":"https://openalex.org/G692611148","display_name":null,"funder_award_id":"Brazil","funder_id":"https://openalex.org/F4320321091","funder_display_name":"Coordena\u00e7\u00e3o de Aperfei\u00e7oamento de Pessoal de N\u00edvel Superior"},{"id":"https://openalex.org/G7193764975","display_name":null,"funder_award_id":"310344/2016-6","funder_id":"https://openalex.org/F4320322025","funder_display_name":"Conselho Nacional de Desenvolvimento Cient\u00edfico e Tecnol\u00f3gico"},{"id":"https://openalex.org/G8837013128","display_name":null,"funder_award_id":"Code 0","funder_id":"https://openalex.org/F4320321091","funder_display_name":"Coordena\u00e7\u00e3o de Aperfei\u00e7oamento de Pessoal de N\u00edvel Superior"}],"funders":[{"id":"https://openalex.org/F4320321091","display_name":"Coordena\u00e7\u00e3o de Aperfei\u00e7oamento de Pessoal de N\u00edvel Superior","ror":"https://ror.org/00x0ma614"},{"id":"https://openalex.org/F4320322025","display_name":"Conselho Nacional de Desenvolvimento Cient\u00edfico e Tecnol\u00f3gico","ror":"https://ror.org/03swz6y49"},{"id":"https://openalex.org/F4320322502","display_name":"Funda\u00e7\u00e3o de Amparo \u00e0 Pesquisa do Estado do Rio Grande do Sul","ror":"https://ror.org/05k49za97"},{"id":"https://openalex.org/F4320329820","display_name":"Banco Nacional de Desenvolvimento Econ\u00f4mico e Social","ror":"https://ror.org/0145x2c32"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4213146877.pdf","grobid_xml":"https://content.openalex.org/works/W4213146877.grobid-xml"},"referenced_works_count":10,"referenced_works":["https://openalex.org/W1978842703","https://openalex.org/W2028673251","https://openalex.org/W2050541807","https://openalex.org/W2053943711","https://openalex.org/W2104005232","https://openalex.org/W2309998549","https://openalex.org/W2734798616","https://openalex.org/W2964849163","https://openalex.org/W2971297443","https://openalex.org/W3123556980"],"related_works":["https://openalex.org/W2017477982","https://openalex.org/W1978801575","https://openalex.org/W4306784270","https://openalex.org/W2029252138","https://openalex.org/W2101899141","https://openalex.org/W3031046715","https://openalex.org/W2017335389","https://openalex.org/W2358544099","https://openalex.org/W1976390578","https://openalex.org/W2072439611"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":4},{"year":2023,"cited_by_count":3}],"updated_date":"2026-04-18T07:56:08.524223","created_date":"2025-10-10T00:00:00"}