{"id":"https://openalex.org/W4200399482","doi":"https://doi.org/10.1093/bioinformatics/btab823","title":"miRe2e: a full end-to-end deep model based on transformers for prediction of pre-miRNAs","display_name":"miRe2e: a full end-to-end deep model based on transformers for prediction of pre-miRNAs","publication_year":2021,"publication_date":"2021-12-01","ids":{"openalex":"https://openalex.org/W4200399482","doi":"https://doi.org/10.1093/bioinformatics/btab823","pmid":"https://pubmed.ncbi.nlm.nih.gov/34875006"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btab823","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab823","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"http://hdl.handle.net/11336/213941","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5009906466","display_name":"Jonathan Raad","orcid":"https://orcid.org/0000-0002-9585-1531"},"institutions":[{"id":"https://openalex.org/I151201029","display_name":"Consejo Nacional de Investigaciones Cient\u00edficas y T\u00e9cnicas","ror":"https://ror.org/03cqe8w59","country_code":"AR","type":"government","lineage":["https://openalex.org/I151201029","https://openalex.org/I4210123736","https://openalex.org/I4387155568"]}],"countries":["AR"],"is_corresponding":true,"raw_author_name":"Jonathan Raad","raw_affiliation_strings":["Informatics Department, Research Institute for Signals, Systems and Computational Intelligence sinc(i) (FICH-UNL/CONICET), Ciudad Universitaria , Santa Fe, Argentina"],"affiliations":[{"raw_affiliation_string":"Informatics Department, Research Institute for Signals, Systems and Computational Intelligence sinc(i) (FICH-UNL/CONICET), Ciudad Universitaria , Santa Fe, Argentina","institution_ids":["https://openalex.org/I151201029"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053316160","display_name":"Leandro A. Bugnon","orcid":"https://orcid.org/0000-0001-5702-946X"},"institutions":[{"id":"https://openalex.org/I151201029","display_name":"Consejo Nacional de Investigaciones Cient\u00edficas y T\u00e9cnicas","ror":"https://ror.org/03cqe8w59","country_code":"AR","type":"government","lineage":["https://openalex.org/I151201029","https://openalex.org/I4210123736","https://openalex.org/I4387155568"]}],"countries":["AR"],"is_corresponding":false,"raw_author_name":"Leandro A Bugnon","raw_affiliation_strings":["Informatics Department, Research Institute for Signals, Systems and Computational Intelligence sinc(i) (FICH-UNL/CONICET), Ciudad Universitaria , Santa Fe, Argentina"],"affiliations":[{"raw_affiliation_string":"Informatics Department, Research Institute for Signals, Systems and Computational Intelligence sinc(i) (FICH-UNL/CONICET), Ciudad Universitaria , Santa Fe, Argentina","institution_ids":["https://openalex.org/I151201029"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077266711","display_name":"Diego H. Milone","orcid":"https://orcid.org/0000-0003-2182-4351"},"institutions":[{"id":"https://openalex.org/I151201029","display_name":"Consejo Nacional de Investigaciones Cient\u00edficas y T\u00e9cnicas","ror":"https://ror.org/03cqe8w59","country_code":"AR","type":"government","lineage":["https://openalex.org/I151201029","https://openalex.org/I4210123736","https://openalex.org/I4387155568"]}],"countries":["AR"],"is_corresponding":false,"raw_author_name":"Diego H Milone","raw_affiliation_strings":["Informatics Department, Research Institute for Signals, Systems and Computational Intelligence sinc(i) (FICH-UNL/CONICET), Ciudad Universitaria , Santa Fe, Argentina"],"affiliations":[{"raw_affiliation_string":"Informatics Department, Research Institute for Signals, Systems and Computational Intelligence sinc(i) (FICH-UNL/CONICET), Ciudad Universitaria , Santa Fe, Argentina","institution_ids":["https://openalex.org/I151201029"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5091024901","display_name":"Georgina Stegmayer","orcid":"https://orcid.org/0000-0003-4459-4560"},"institutions":[{"id":"https://openalex.org/I151201029","display_name":"Consejo Nacional de Investigaciones Cient\u00edficas y T\u00e9cnicas","ror":"https://ror.org/03cqe8w59","country_code":"AR","type":"government","lineage":["https://openalex.org/I151201029","https://openalex.org/I4210123736","https://openalex.org/I4387155568"]}],"countries":["AR"],"is_corresponding":false,"raw_author_name":"Georgina Stegmayer","raw_affiliation_strings":["Informatics Department, Research Institute for Signals, Systems and Computational Intelligence sinc(i) (FICH-UNL/CONICET), Ciudad Universitaria , Santa Fe, Argentina"],"affiliations":[{"raw_affiliation_string":"Informatics Department, Research Institute for Signals, Systems and Computational Intelligence sinc(i) (FICH-UNL/CONICET), Ciudad Universitaria , Santa Fe, Argentina","institution_ids":["https://openalex.org/I151201029"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5009906466"],"corresponding_institution_ids":["https://openalex.org/I151201029"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":1.5741,"has_fulltext":false,"cited_by_count":29,"citation_normalized_percentile":{"value":0.8258287,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":97,"max":99},"biblio":{"volume":"38","issue":"5","first_page":"1191","last_page":"1197"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10062","display_name":"MicroRNA in disease regulation","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10062","display_name":"MicroRNA in disease regulation","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.9976000189781189,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/end-to-end-principle","display_name":"End-to-end principle","score":0.9068760275840759},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.584559977054596},{"id":"https://openalex.org/keywords/microrna","display_name":"microRNA","score":0.4734627604484558},{"id":"https://openalex.org/keywords/transformer","display_name":"Transformer","score":0.4506714940071106},{"id":"https://openalex.org/keywords/end-user","display_name":"End user","score":0.4371940493583679},{"id":"https://openalex.org/keywords/end-of-history","display_name":"End of history","score":0.4348303973674774},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.2859639823436737},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.17983600497245789},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.15023493766784668},{"id":"https://openalex.org/keywords/electrical-engineering","display_name":"Electrical engineering","score":0.12434789538383484},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.11897361278533936},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.07147163152694702},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.05576807260513306}],"concepts":[{"id":"https://openalex.org/C74296488","wikidata":"https://www.wikidata.org/wiki/Q2527392","display_name":"End-to-end principle","level":2,"score":0.9068760275840759},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.584559977054596},{"id":"https://openalex.org/C145059251","wikidata":"https://www.wikidata.org/wiki/Q310899","display_name":"microRNA","level":3,"score":0.4734627604484558},{"id":"https://openalex.org/C66322947","wikidata":"https://www.wikidata.org/wiki/Q11658","display_name":"Transformer","level":3,"score":0.4506714940071106},{"id":"https://openalex.org/C91262260","wikidata":"https://www.wikidata.org/wiki/Q528074","display_name":"End user","level":2,"score":0.4371940493583679},{"id":"https://openalex.org/C2778935963","wikidata":"https://www.wikidata.org/wiki/Q13218530","display_name":"End of history","level":3,"score":0.4348303973674774},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.2859639823436737},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.17983600497245789},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.15023493766784668},{"id":"https://openalex.org/C119599485","wikidata":"https://www.wikidata.org/wiki/Q43035","display_name":"Electrical engineering","level":1,"score":0.12434789538383484},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.11897361278533936},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.07147163152694702},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.05576807260513306},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C94625758","wikidata":"https://www.wikidata.org/wiki/Q7163","display_name":"Politics","level":2,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C165801399","wikidata":"https://www.wikidata.org/wiki/Q25428","display_name":"Voltage","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btab823","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab823","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:34875006","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/34875006","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:ri.conicet.gov.ar:11336/213941","is_oa":true,"landing_page_url":"http://hdl.handle.net/11336/213941","pdf_url":null,"source":{"id":"https://openalex.org/S4306401400","display_name":"Conicet","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210104196","host_organization_name":"Centro Cient\u00edfico Tecnol\u00f3gico - Nordeste","host_organization_lineage":["https://openalex.org/I4210104196"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-sa","license_id":"https://openalex.org/licenses/cc-by-nc-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"pmh:oai:ri.conicet.gov.ar:11336/213941","is_oa":true,"landing_page_url":"http://hdl.handle.net/11336/213941","pdf_url":null,"source":{"id":"https://openalex.org/S4306401400","display_name":"Conicet","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210104196","host_organization_name":"Centro Cient\u00edfico Tecnol\u00f3gico - Nordeste","host_organization_lineage":["https://openalex.org/I4210104196"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-sa","license_id":"https://openalex.org/licenses/cc-by-nc-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G311940730","display_name":null,"funder_award_id":"CAI+D 2016 #082 and CAID 2020 #115","funder_id":"https://openalex.org/F4320310264","funder_display_name":"University of Nebraska-Lincoln"},{"id":"https://openalex.org/G329973018","display_name":null,"funder_award_id":"PICT 2018 #3384 and PICT 2018 #2905","funder_id":"https://openalex.org/F4320334832","funder_display_name":"Agencia Nacional de Promoci\u00f3n Cient\u00edfica y Tecnol\u00f3gica"}],"funders":[{"id":"https://openalex.org/F4320310264","display_name":"University of Nebraska-Lincoln","ror":"https://ror.org/043mer456"},{"id":"https://openalex.org/F4320334832","display_name":"Agencia Nacional de Promoci\u00f3n Cient\u00edfica y Tecnol\u00f3gica","ror":"https://ror.org/03stxzb56"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":35,"referenced_works":["https://openalex.org/W144423133","https://openalex.org/W1878848198","https://openalex.org/W1966716734","https://openalex.org/W1984385688","https://openalex.org/W2103250001","https://openalex.org/W2163922914","https://openalex.org/W2302255633","https://openalex.org/W2433743436","https://openalex.org/W2746775577","https://openalex.org/W2749122933","https://openalex.org/W2750811341","https://openalex.org/W2803724033","https://openalex.org/W2807818025","https://openalex.org/W2860192827","https://openalex.org/W2912532066","https://openalex.org/W2914032330","https://openalex.org/W2919115771","https://openalex.org/W2935703330","https://openalex.org/W2946035471","https://openalex.org/W2953502908","https://openalex.org/W2954519497","https://openalex.org/W2956146155","https://openalex.org/W2990528340","https://openalex.org/W2995926697","https://openalex.org/W2997574366","https://openalex.org/W2999044305","https://openalex.org/W3036559261","https://openalex.org/W3072729871","https://openalex.org/W3101509328","https://openalex.org/W3129125493","https://openalex.org/W3146944767","https://openalex.org/W3151623506","https://openalex.org/W3157972851","https://openalex.org/W4211064852","https://openalex.org/W6743789343"],"related_works":["https://openalex.org/W3016188207","https://openalex.org/W4299590256","https://openalex.org/W3118453067","https://openalex.org/W2754236486","https://openalex.org/W4286908490","https://openalex.org/W3179968364","https://openalex.org/W4367860523","https://openalex.org/W2417674618","https://openalex.org/W1538841260","https://openalex.org/W2167867375"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":9},{"year":2024,"cited_by_count":6},{"year":2023,"cited_by_count":8},{"year":2022,"cited_by_count":4}],"updated_date":"2026-04-09T08:11:56.329763","created_date":"2025-10-10T00:00:00"}
