{"id":"https://openalex.org/W3212362400","doi":"https://doi.org/10.1093/bioinformatics/btab766","title":"GADGETS: a genetic algorithm for detecting epistasis using nuclear families","display_name":"GADGETS: a genetic algorithm for detecting epistasis using nuclear families","publication_year":2021,"publication_date":"2021-11-05","ids":{"openalex":"https://openalex.org/W3212362400","doi":"https://doi.org/10.1093/bioinformatics/btab766","mag":"3212362400","pmid":"https://pubmed.ncbi.nlm.nih.gov/34788792"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btab766","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab766","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10060691/pdf/btab766.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5057030141","display_name":"Michael Nodzenski","orcid":"https://orcid.org/0000-0001-5476-8427"},"institutions":[{"id":"https://openalex.org/I4210095140","display_name":"National Institute of Environmental Health Sciences","ror":"https://ror.org/00j4k1h63","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I4210095140"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Michael Nodzenski","raw_affiliation_strings":["Biostatistics and Computational Biology Branch, National Institute of Environmental Health Sciences, NIH , Research Triangle Park, NC 27709, USA"],"affiliations":[{"raw_affiliation_string":"Biostatistics and Computational Biology Branch, National Institute of Environmental Health Sciences, NIH , Research Triangle Park, NC 27709, USA","institution_ids":["https://openalex.org/I4210095140"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5049668994","display_name":"Min Shi","orcid":"https://orcid.org/0000-0001-8265-5307"},"institutions":[{"id":"https://openalex.org/I4210095140","display_name":"National Institute of Environmental Health Sciences","ror":"https://ror.org/00j4k1h63","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I4210095140"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Min Shi","raw_affiliation_strings":["Biostatistics and Computational Biology Branch, National Institute of Environmental Health Sciences, NIH , Research Triangle Park, NC 27709, USA"],"affiliations":[{"raw_affiliation_string":"Biostatistics and Computational Biology Branch, National Institute of Environmental Health Sciences, NIH , Research Triangle Park, NC 27709, USA","institution_ids":["https://openalex.org/I4210095140"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091539133","display_name":"J.M. Krahn","orcid":"https://orcid.org/0000-0002-4640-0267"},"institutions":[{"id":"https://openalex.org/I4210095140","display_name":"National Institute of Environmental Health Sciences","ror":"https://ror.org/00j4k1h63","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I4210095140"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Juno M Krahn","raw_affiliation_strings":["Genome Integrity and Structural Biology Laboratory, National Institute of Environmental Health Sciences, NIH , Research Triangle Park, NC 27709, USA"],"affiliations":[{"raw_affiliation_string":"Genome Integrity and Structural Biology Laboratory, National Institute of Environmental Health Sciences, NIH , Research Triangle Park, NC 27709, USA","institution_ids":["https://openalex.org/I4210095140"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5042725347","display_name":"Alison Wise","orcid":null},"institutions":[{"id":"https://openalex.org/I4210095140","display_name":"National Institute of Environmental Health Sciences","ror":"https://ror.org/00j4k1h63","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I4210095140"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Alison S Wise","raw_affiliation_strings":["Biostatistics and Computational Biology Branch, National Institute of Environmental Health Sciences, NIH , Research Triangle Park, NC 27709, USA"],"affiliations":[{"raw_affiliation_string":"Biostatistics and Computational Biology Branch, National Institute of Environmental Health Sciences, NIH , Research Triangle Park, NC 27709, USA","institution_ids":["https://openalex.org/I4210095140"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100384432","display_name":"Yuanyuan Li","orcid":"https://orcid.org/0000-0002-7324-9734"},"institutions":[{"id":"https://openalex.org/I4210095140","display_name":"National Institute of Environmental Health Sciences","ror":"https://ror.org/00j4k1h63","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I4210095140"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yuanyuan Li","raw_affiliation_strings":["Biostatistics and Computational Biology Branch, National Institute of Environmental Health Sciences, NIH , Research Triangle Park, NC 27709, USA"],"affiliations":[{"raw_affiliation_string":"Biostatistics and Computational Biology Branch, National Institute of Environmental Health Sciences, NIH , Research Triangle Park, NC 27709, USA","institution_ids":["https://openalex.org/I4210095140"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100408451","display_name":"Leping Li","orcid":"https://orcid.org/0000-0003-4208-0259"},"institutions":[{"id":"https://openalex.org/I4210095140","display_name":"National Institute of Environmental Health Sciences","ror":"https://ror.org/00j4k1h63","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I4210095140"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Leping Li","raw_affiliation_strings":["Biostatistics and Computational Biology Branch, National Institute of Environmental Health Sciences, NIH , Research Triangle Park, NC 27709, USA"],"affiliations":[{"raw_affiliation_string":"Biostatistics and Computational Biology Branch, National Institute of Environmental Health Sciences, NIH , Research Triangle Park, NC 27709, USA","institution_ids":["https://openalex.org/I4210095140"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036278452","display_name":"David M. Umbach","orcid":"https://orcid.org/0000-0002-7142-2812"},"institutions":[{"id":"https://openalex.org/I4210095140","display_name":"National Institute of Environmental Health Sciences","ror":"https://ror.org/00j4k1h63","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I4210095140"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"David M Umbach","raw_affiliation_strings":["Biostatistics and Computational Biology Branch, National Institute of Environmental Health Sciences, NIH , Research Triangle Park, NC 27709, USA"],"affiliations":[{"raw_affiliation_string":"Biostatistics and Computational Biology Branch, National Institute of Environmental Health Sciences, NIH , Research Triangle Park, NC 27709, USA","institution_ids":["https://openalex.org/I4210095140"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5114377160","display_name":"Clarice R. Weinberg","orcid":"https://orcid.org/0000-0002-7713-8556"},"institutions":[{"id":"https://openalex.org/I4210095140","display_name":"National Institute of Environmental Health Sciences","ror":"https://ror.org/00j4k1h63","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I4210095140"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Clarice R Weinberg","raw_affiliation_strings":["Biostatistics and Computational Biology Branch, National Institute of Environmental Health Sciences, NIH , Research Triangle Park, NC 27709, USA"],"affiliations":[{"raw_affiliation_string":"Biostatistics and Computational Biology Branch, National Institute of Environmental Health Sciences, NIH , Research Triangle Park, NC 27709, USA","institution_ids":["https://openalex.org/I4210095140"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5114377160"],"corresponding_institution_ids":["https://openalex.org/I4210095140"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.0874,"has_fulltext":true,"cited_by_count":2,"citation_normalized_percentile":{"value":0.39541364,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":95},"biblio":{"volume":"38","issue":"4","first_page":"1052","last_page":"1058"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.9944000244140625,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.9944000244140625,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10351","display_name":"Liver Disease Diagnosis and Treatment","score":0.9933000206947327,"subfield":{"id":"https://openalex.org/subfields/2713","display_name":"Epidemiology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11131","display_name":"Proteoglycans and glycosaminoglycans research","score":0.9815000295639038,"subfield":{"id":"https://openalex.org/subfields/1307","display_name":"Cell Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/epistasis","display_name":"Epistasis","score":0.8025155067443848},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5721198320388794},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.5037955641746521},{"id":"https://openalex.org/keywords/genetic-algorithm","display_name":"Genetic algorithm","score":0.4603900611400604},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2954978942871094},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2694540023803711},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.23364078998565674},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.07710576057434082}],"concepts":[{"id":"https://openalex.org/C61727976","wikidata":"https://www.wikidata.org/wiki/Q751748","display_name":"Epistasis","level":3,"score":0.8025155067443848},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5721198320388794},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.5037955641746521},{"id":"https://openalex.org/C8880873","wikidata":"https://www.wikidata.org/wiki/Q187787","display_name":"Genetic algorithm","level":2,"score":0.4603900611400604},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2954978942871094},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2694540023803711},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.23364078998565674},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.07710576057434082}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004843","descriptor_name":"Epistasis, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004843","descriptor_name":"Epistasis, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004843","descriptor_name":"Epistasis, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004843","descriptor_name":"Epistasis, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009679","descriptor_name":"Nuclear Family","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009679","descriptor_name":"Nuclear Family","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009679","descriptor_name":"Nuclear Family","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009679","descriptor_name":"Nuclear Family","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055106","descriptor_name":"Genome-Wide Association Study","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055106","descriptor_name":"Genome-Wide Association Study","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055106","descriptor_name":"Genome-Wide Association Study","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055106","descriptor_name":"Genome-Wide Association Study","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btab766","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab766","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:34788792","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/34788792","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:10060691","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10060691","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10060691/pdf/btab766.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"pmh:oai:pubmedcentral.nih.gov:10060691","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10060691","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10060691/pdf/btab766.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G5219172604","display_name":null,"funder_award_id":"ES040007","funder_id":"https://openalex.org/F4320337361","funder_display_name":"National Institute of Environmental Health Sciences"}],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337361","display_name":"National Institute of Environmental Health Sciences","ror":"https://ror.org/00j4k1h63"}],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W3212362400.pdf"},"referenced_works_count":27,"referenced_works":["https://openalex.org/W1497256448","https://openalex.org/W1516844016","https://openalex.org/W1516948452","https://openalex.org/W1968344288","https://openalex.org/W1974510435","https://openalex.org/W1993537263","https://openalex.org/W1993856301","https://openalex.org/W2010453616","https://openalex.org/W2013223495","https://openalex.org/W2024268367","https://openalex.org/W2029874061","https://openalex.org/W2041170649","https://openalex.org/W2041654748","https://openalex.org/W2072685350","https://openalex.org/W2080904597","https://openalex.org/W2104059095","https://openalex.org/W2120423544","https://openalex.org/W2123178249","https://openalex.org/W2123202052","https://openalex.org/W2129961269","https://openalex.org/W2154572047","https://openalex.org/W2161633633","https://openalex.org/W2170609318","https://openalex.org/W2332345439","https://openalex.org/W2782092389","https://openalex.org/W2884334723","https://openalex.org/W3081640880"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W1547817677","https://openalex.org/W2023460495","https://openalex.org/W2615678788","https://openalex.org/W1967902778","https://openalex.org/W3083099115","https://openalex.org/W1981509636","https://openalex.org/W4235217192","https://openalex.org/W3139253026","https://openalex.org/W3035525216"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2022,"cited_by_count":1}],"updated_date":"2026-03-13T16:22:10.518609","created_date":"2025-10-10T00:00:00"}
