{"id":"https://openalex.org/W3209621873","doi":"https://doi.org/10.1093/bioinformatics/btab750","title":"AOP-helpFinder webserver: a tool for comprehensive analysis of the literature to support adverse outcome pathways development","display_name":"AOP-helpFinder webserver: a tool for comprehensive analysis of the literature to support adverse outcome pathways development","publication_year":2021,"publication_date":"2021-10-27","ids":{"openalex":"https://openalex.org/W3209621873","doi":"https://doi.org/10.1093/bioinformatics/btab750","mag":"3209621873","pmid":"https://pubmed.ncbi.nlm.nih.gov/34718414"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btab750","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab750","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/38/4/1173/42319181/btab750.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/38/4/1173/42319181/btab750.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5014304382","display_name":"Florence Jornod","orcid":"https://orcid.org/0000-0001-7586-6819"},"institutions":[{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I204730241","display_name":"Universit\u00e9 Paris Cit\u00e9","ror":"https://ror.org/05f82e368","country_code":"FR","type":"education","lineage":["https://openalex.org/I204730241"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Florence Jornod","raw_affiliation_strings":["Universit\u00e9 de Paris, T3S, Inserm UMR-S1124 , Paris F-75006, France"],"affiliations":[{"raw_affiliation_string":"Universit\u00e9 de Paris, T3S, Inserm UMR-S1124 , Paris F-75006, France","institution_ids":["https://openalex.org/I204730241","https://openalex.org/I154526488"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5060903119","display_name":"Thomas Jaylet","orcid":"https://orcid.org/0000-0002-4990-6634"},"institutions":[{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I204730241","display_name":"Universit\u00e9 Paris Cit\u00e9","ror":"https://ror.org/05f82e368","country_code":"FR","type":"education","lineage":["https://openalex.org/I204730241"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Thomas Jaylet","raw_affiliation_strings":["Universit\u00e9 de Paris, T3S, Inserm UMR-S1124 , Paris F-75006, France"],"affiliations":[{"raw_affiliation_string":"Universit\u00e9 de Paris, T3S, Inserm UMR-S1124 , Paris F-75006, France","institution_ids":["https://openalex.org/I204730241","https://openalex.org/I154526488"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5047891521","display_name":"Lud\u011bk Bl\u00e1ha","orcid":"https://orcid.org/0000-0002-7314-7455"},"institutions":[{"id":"https://openalex.org/I21449261","display_name":"Masaryk University","ror":"https://ror.org/02j46qs45","country_code":"CZ","type":"education","lineage":["https://openalex.org/I21449261"]}],"countries":["CZ"],"is_corresponding":false,"raw_author_name":"Ludek Blaha","raw_affiliation_strings":["RECETOX, Faculty of Science, Masaryk University , Brno CZ62500, Czech Republic","MUNI - Masaryk University [Brno] (Kamenice 5, Brno CZ-62500, Czech Republic - Czech Republic)"],"affiliations":[{"raw_affiliation_string":"RECETOX, Faculty of Science, Masaryk University , Brno CZ62500, Czech Republic","institution_ids":["https://openalex.org/I21449261"]},{"raw_affiliation_string":"MUNI - Masaryk University [Brno] (Kamenice 5, Brno CZ-62500, Czech Republic - Czech Republic)","institution_ids":["https://openalex.org/I21449261"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091576222","display_name":"Dimosthenis Sarigiannis","orcid":"https://orcid.org/0000-0003-2514-314X"},"institutions":[{"id":"https://openalex.org/I21370196","display_name":"Aristotle University of Thessaloniki","ror":"https://ror.org/02j61yw88","country_code":"GR","type":"education","lineage":["https://openalex.org/I21370196"]}],"countries":["GR"],"is_corresponding":false,"raw_author_name":"Denis Sarigiannis","raw_affiliation_strings":["HERACLES Research Center on the Exposome and Health, Aristotle University of Thessaloniki, Center for Interdiciplinary Research and Innovation , Thessaloniki 57001, Greece"],"affiliations":[{"raw_affiliation_string":"HERACLES Research Center on the Exposome and Health, Aristotle University of Thessaloniki, Center for Interdiciplinary Research and Innovation , Thessaloniki 57001, Greece","institution_ids":["https://openalex.org/I21370196"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007105803","display_name":"Luc Tamisier","orcid":null},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I204730241","display_name":"Universit\u00e9 Paris Cit\u00e9","ror":"https://ror.org/05f82e368","country_code":"FR","type":"education","lineage":["https://openalex.org/I204730241"]},{"id":"https://openalex.org/I4387154016","display_name":"SPPIN - Saints-P\u00e8res Paris Institute for Neurosciences","ror":"https://ror.org/01a4enz31","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I204730241","https://openalex.org/I4387154016"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Luc Tamisier","raw_affiliation_strings":["Universit\u00e9 de Paris, SPPIN CNRS UMR 8003 ,Paris F-75006, France"],"affiliations":[{"raw_affiliation_string":"Universit\u00e9 de Paris, SPPIN CNRS UMR 8003 ,Paris F-75006, France","institution_ids":["https://openalex.org/I4387154016","https://openalex.org/I204730241","https://openalex.org/I1294671590"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5068822653","display_name":"Karine Audouze","orcid":"https://orcid.org/0000-0001-7525-4089"},"institutions":[{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I204730241","display_name":"Universit\u00e9 Paris Cit\u00e9","ror":"https://ror.org/05f82e368","country_code":"FR","type":"education","lineage":["https://openalex.org/I204730241"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Karine Audouze","raw_affiliation_strings":["Universit\u00e9 de Paris, T3S, Inserm UMR-S1124 , Paris F-75006, France"],"affiliations":[{"raw_affiliation_string":"Universit\u00e9 de Paris, T3S, Inserm UMR-S1124 , Paris F-75006, France","institution_ids":["https://openalex.org/I204730241","https://openalex.org/I154526488"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5068822653"],"corresponding_institution_ids":["https://openalex.org/I154526488","https://openalex.org/I204730241"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":6.3606,"has_fulltext":true,"cited_by_count":56,"citation_normalized_percentile":{"value":0.97038249,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":100},"biblio":{"volume":"38","issue":"4","first_page":"1173","last_page":"1175"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9940999746322632,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9940999746322632,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10686","display_name":"Effects and risks of endocrine disrupting chemicals","score":0.9473000168800354,"subfield":{"id":"https://openalex.org/subfields/2307","display_name":"Health, Toxicology and Mutagenesis"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12281","display_name":"Animal testing and alternatives","score":0.9402999877929688,"subfield":{"id":"https://openalex.org/subfields/3404","display_name":"Small Animals"},"field":{"id":"https://openalex.org/fields/34","display_name":"Veterinary"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/adverse-outcome-pathway","display_name":"Adverse Outcome Pathway","score":0.9288895130157471},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6489822864532471},{"id":"https://openalex.org/keywords/documentation","display_name":"Documentation","score":0.6198969483375549},{"id":"https://openalex.org/keywords/web-server","display_name":"Web server","score":0.5187037587165833},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.3903278708457947},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.33745723962783813},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.3013608455657959},{"id":"https://openalex.org/keywords/the-internet","display_name":"The Internet","score":0.26469680666923523},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.13537266850471497},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.12364479899406433}],"concepts":[{"id":"https://openalex.org/C2910206359","wikidata":"https://www.wikidata.org/wiki/Q18559532","display_name":"Adverse Outcome Pathway","level":2,"score":0.9288895130157471},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6489822864532471},{"id":"https://openalex.org/C56666940","wikidata":"https://www.wikidata.org/wiki/Q788790","display_name":"Documentation","level":2,"score":0.6198969483375549},{"id":"https://openalex.org/C11392498","wikidata":"https://www.wikidata.org/wiki/Q11288","display_name":"Web server","level":3,"score":0.5187037587165833},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.3903278708457947},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.33745723962783813},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.3013608455657959},{"id":"https://openalex.org/C110875604","wikidata":"https://www.wikidata.org/wiki/Q75","display_name":"The Internet","level":2,"score":0.26469680666923523},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.13537266850471497},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.12364479899406433},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000073931","descriptor_name":"Adverse Outcome Pathways","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000073931","descriptor_name":"Adverse Outcome Pathways","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000073931","descriptor_name":"Adverse Outcome Pathways","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000079803","descriptor_name":"Data Management","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000079803","descriptor_name":"Data Management","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000079803","descriptor_name":"Data Management","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018570","descriptor_name":"Risk Assessment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D018570","descriptor_name":"Risk Assessment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D018570","descriptor_name":"Risk Assessment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1093/bioinformatics/btab750","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab750","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/38/4/1173/42319181/btab750.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:34718414","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/34718414","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:8796376","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8796376","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:HAL:hal-04678124v1","is_oa":true,"landing_page_url":"https://hal.science/hal-04678124","pdf_url":null,"source":{"id":"https://openalex.org/S4406922466","display_name":"SPIRE - Sciences Po Institutional REpository","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics, 2022, 38 (4), pp.1173-1175. &#x27E8;10.1093/bioinformatics/btab750&#x27E9;","raw_type":"Journal articles"},{"id":"pmh:oai:is.muni.cz:1838518","is_oa":true,"landing_page_url":"https://is.muni.cz/publication/1838518","pdf_url":null,"source":{"id":"https://openalex.org/S4306400102","display_name":"Ve\u0159ejn\u00e9 slu\u017eby Informa\u010dn\u00edho syst\u00e9mu (Masarykiana Brunensis Universitas)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btab750","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab750","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/38/4/1173/42319181/btab750.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.5299999713897705,"id":"https://metadata.un.org/sdg/17","display_name":"Partnerships for the goals"}],"awards":[{"id":"https://openalex.org/G2313148124","display_name":null,"funder_award_id":"733032","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G6595194422","display_name":null,"funder_award_id":"825712","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G8051717526","display_name":null,"funder_award_id":"Grant","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G8318064016","display_name":null,"funder_award_id":"Horizon","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"}],"funders":[{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320320893","display_name":"Institut National de la Sant\u00e9 et de la Recherche M\u00e9dicale","ror":"https://ror.org/02vjkv261"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3209621873.pdf","grobid_xml":"https://content.openalex.org/works/W3209621873.grobid-xml"},"referenced_works_count":11,"referenced_works":["https://openalex.org/W2000089305","https://openalex.org/W2547552127","https://openalex.org/W2619954869","https://openalex.org/W2769853272","https://openalex.org/W2780711897","https://openalex.org/W2935802524","https://openalex.org/W2979700668","https://openalex.org/W3004147540","https://openalex.org/W3011678093","https://openalex.org/W3032261592","https://openalex.org/W3157307907"],"related_works":["https://openalex.org/W2782801093","https://openalex.org/W2038304359","https://openalex.org/W2725822996","https://openalex.org/W4381855166","https://openalex.org/W20005905","https://openalex.org/W2915376283","https://openalex.org/W2618286804","https://openalex.org/W3088834846","https://openalex.org/W2329643025","https://openalex.org/W2169248433"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2026,"cited_by_count":4},{"year":2025,"cited_by_count":10},{"year":2024,"cited_by_count":14},{"year":2023,"cited_by_count":10},{"year":2022,"cited_by_count":16},{"year":2021,"cited_by_count":2}],"updated_date":"2026-04-13T07:58:08.660418","created_date":"2025-10-10T00:00:00"}
