{"id":"https://openalex.org/W3204213738","doi":"https://doi.org/10.1093/bioinformatics/btab677","title":"iDNA-ABT: advanced deep learning model for detecting DNA methylation with adaptive features and transductive information maximization","display_name":"iDNA-ABT: advanced deep learning model for detecting DNA methylation with adaptive features and transductive information maximization","publication_year":2021,"publication_date":"2021-09-30","ids":{"openalex":"https://openalex.org/W3204213738","doi":"https://doi.org/10.1093/bioinformatics/btab677","mag":"3204213738","pmid":"https://pubmed.ncbi.nlm.nih.gov/34601568"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btab677","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab677","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101748302","display_name":"Yingying Yu","orcid":"https://orcid.org/0000-0002-9452-0298"},"institutions":[{"id":"https://openalex.org/I154099455","display_name":"Shandong University","ror":"https://ror.org/0207yh398","country_code":"CN","type":"education","lineage":["https://openalex.org/I154099455"]},{"id":"https://openalex.org/I354108","display_name":"Minjiang University","ror":"https://ror.org/00s7tkw17","country_code":"CN","type":"education","lineage":["https://openalex.org/I354108"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yingying Yu","raw_affiliation_strings":["Fujian Provincial Key Laboratory of Information Processing and Intelligent Control (Minjiang University) , Fuzhou, China","Joint SDU-NTU Centre for Artificial Intelligence Research (C-FAIR), Shandong University , Jinan, China","School of Software, Shandong University , Jinan, China"],"affiliations":[{"raw_affiliation_string":"Fujian Provincial Key Laboratory of Information Processing and Intelligent Control (Minjiang University) , Fuzhou, China","institution_ids":["https://openalex.org/I354108"]},{"raw_affiliation_string":"Joint SDU-NTU Centre for Artificial Intelligence Research (C-FAIR), Shandong University , Jinan, China","institution_ids":["https://openalex.org/I154099455"]},{"raw_affiliation_string":"School of Software, Shandong University , Jinan, China","institution_ids":["https://openalex.org/I154099455"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5042489447","display_name":"Wenjia He","orcid":"https://orcid.org/0000-0001-8161-4642"},"institutions":[{"id":"https://openalex.org/I154099455","display_name":"Shandong University","ror":"https://ror.org/0207yh398","country_code":"CN","type":"education","lineage":["https://openalex.org/I154099455"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Wenjia He","raw_affiliation_strings":["Joint SDU-NTU Centre for Artificial Intelligence Research (C-FAIR), Shandong University , Jinan, China","School of Software, Shandong University , Jinan, China"],"affiliations":[{"raw_affiliation_string":"Joint SDU-NTU Centre for Artificial Intelligence Research (C-FAIR), Shandong University , Jinan, China","institution_ids":["https://openalex.org/I154099455"]},{"raw_affiliation_string":"School of Software, Shandong University , Jinan, China","institution_ids":["https://openalex.org/I154099455"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089672646","display_name":"Junru Jin","orcid":"https://orcid.org/0000-0002-3688-3285"},"institutions":[{"id":"https://openalex.org/I154099455","display_name":"Shandong University","ror":"https://ror.org/0207yh398","country_code":"CN","type":"education","lineage":["https://openalex.org/I154099455"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Junru Jin","raw_affiliation_strings":["Joint SDU-NTU Centre for Artificial Intelligence Research (C-FAIR), Shandong University , Jinan, China","School of Software, Shandong University , Jinan, China"],"affiliations":[{"raw_affiliation_string":"Joint SDU-NTU Centre for Artificial Intelligence Research (C-FAIR), Shandong University , Jinan, China","institution_ids":["https://openalex.org/I154099455"]},{"raw_affiliation_string":"School of Software, Shandong University , Jinan, China","institution_ids":["https://openalex.org/I154099455"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050524397","display_name":"Guobao Xiao","orcid":"https://orcid.org/0000-0003-2928-8100"},"institutions":[{"id":"https://openalex.org/I354108","display_name":"Minjiang University","ror":"https://ror.org/00s7tkw17","country_code":"CN","type":"education","lineage":["https://openalex.org/I354108"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Guobao Xiao","raw_affiliation_strings":["Fujian Provincial Key Laboratory of Information Processing and Intelligent Control (Minjiang University) , Fuzhou, China"],"affiliations":[{"raw_affiliation_string":"Fujian Provincial Key Laboratory of Information Processing and Intelligent Control (Minjiang University) , Fuzhou, China","institution_ids":["https://openalex.org/I354108"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101414718","display_name":"Lizhen Cui","orcid":"https://orcid.org/0000-0002-8262-8883"},"institutions":[{"id":"https://openalex.org/I154099455","display_name":"Shandong University","ror":"https://ror.org/0207yh398","country_code":"CN","type":"education","lineage":["https://openalex.org/I154099455"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Lizhen Cui","raw_affiliation_strings":["Joint SDU-NTU Centre for Artificial Intelligence Research (C-FAIR), Shandong University , Jinan, China","School of Software, Shandong University , Jinan, China"],"affiliations":[{"raw_affiliation_string":"Joint SDU-NTU Centre for Artificial Intelligence Research (C-FAIR), Shandong University , Jinan, China","institution_ids":["https://openalex.org/I154099455"]},{"raw_affiliation_string":"School of Software, Shandong University , Jinan, China","institution_ids":["https://openalex.org/I154099455"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5006256482","display_name":"Rao Zeng","orcid":"https://orcid.org/0000-0002-2025-9904"},"institutions":[{"id":"https://openalex.org/I191208505","display_name":"Xiamen University","ror":"https://ror.org/00mcjh785","country_code":"CN","type":"education","lineage":["https://openalex.org/I191208505"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Rao Zeng","raw_affiliation_strings":["Department of Software Engineering, Xiamen University , Xiamen, China"],"affiliations":[{"raw_affiliation_string":"Department of Software Engineering, Xiamen University , Xiamen, China","institution_ids":["https://openalex.org/I191208505"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5033232360","display_name":"Leyi Wei","orcid":"https://orcid.org/0000-0003-1444-190X"},"institutions":[{"id":"https://openalex.org/I154099455","display_name":"Shandong University","ror":"https://ror.org/0207yh398","country_code":"CN","type":"education","lineage":["https://openalex.org/I154099455"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Leyi Wei","raw_affiliation_strings":["Joint SDU-NTU Centre for Artificial Intelligence Research (C-FAIR), Shandong University , Jinan, China","School of Software, Shandong University , Jinan, China"],"affiliations":[{"raw_affiliation_string":"Joint SDU-NTU Centre for Artificial Intelligence Research (C-FAIR), Shandong University , Jinan, China","institution_ids":["https://openalex.org/I154099455"]},{"raw_affiliation_string":"School of Software, Shandong University , Jinan, China","institution_ids":["https://openalex.org/I154099455"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5006256482","https://openalex.org/A5033232360"],"corresponding_institution_ids":["https://openalex.org/I154099455","https://openalex.org/I191208505"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":3.0023,"has_fulltext":false,"cited_by_count":59,"citation_normalized_percentile":{"value":0.92691953,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"37","issue":"24","first_page":"4603","last_page":"4610"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10269","display_name":"Epigenetics and DNA Methylation","score":0.9955999851226807,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10269","display_name":"Epigenetics and DNA Methylation","score":0.9955999851226807,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.989300012588501,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9796000123023987,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/dna-methylation","display_name":"DNA methylation","score":0.7495133876800537},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7184433937072754},{"id":"https://openalex.org/keywords/maximization","display_name":"Maximization","score":0.7159599661827087},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5877427458763123},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.46450018882751465},{"id":"https://openalex.org/keywords/dna","display_name":"DNA","score":0.4369010031223297},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4300297796726227},{"id":"https://openalex.org/keywords/methylation","display_name":"Methylation","score":0.4226316809654236},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.25537991523742676},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.23986804485321045},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.12174823880195618},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.10582396388053894},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.10171329975128174},{"id":"https://openalex.org/keywords/mathematical-optimization","display_name":"Mathematical optimization","score":0.09663581848144531}],"concepts":[{"id":"https://openalex.org/C190727270","wikidata":"https://www.wikidata.org/wiki/Q874745","display_name":"DNA methylation","level":4,"score":0.7495133876800537},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7184433937072754},{"id":"https://openalex.org/C2776330181","wikidata":"https://www.wikidata.org/wiki/Q18358244","display_name":"Maximization","level":2,"score":0.7159599661827087},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5877427458763123},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.46450018882751465},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.4369010031223297},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4300297796726227},{"id":"https://openalex.org/C33288867","wikidata":"https://www.wikidata.org/wiki/Q518328","display_name":"Methylation","level":3,"score":0.4226316809654236},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.25537991523742676},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.23986804485321045},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.12174823880195618},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.10582396388053894},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.10171329975128174},{"id":"https://openalex.org/C126255220","wikidata":"https://www.wikidata.org/wiki/Q141495","display_name":"Mathematical optimization","level":1,"score":0.09663581848144531}],"mesh":[{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019175","descriptor_name":"DNA Methylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019175","descriptor_name":"DNA Methylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019175","descriptor_name":"DNA Methylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D044127","descriptor_name":"Epigenesis, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D044127","descriptor_name":"Epigenesis, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D044127","descriptor_name":"Epigenesis, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btab677","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab677","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:34601568","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/34601568","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.6700000166893005,"id":"https://metadata.un.org/sdg/15","display_name":"Life in Land"}],"awards":[{"id":"https://openalex.org/G2833016204","display_name":null,"funder_award_id":"62071278","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G7047309604","display_name":null,"funder_award_id":"62072329","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":41,"referenced_works":["https://openalex.org/W1486183464","https://openalex.org/W1555148682","https://openalex.org/W1902237438","https://openalex.org/W1997866877","https://openalex.org/W2045268887","https://openalex.org/W2052023668","https://openalex.org/W2123032740","https://openalex.org/W2187089797","https://openalex.org/W2566961871","https://openalex.org/W2612517884","https://openalex.org/W2770001620","https://openalex.org/W2883534252","https://openalex.org/W2891420113","https://openalex.org/W2899886793","https://openalex.org/W2942801317","https://openalex.org/W2946682182","https://openalex.org/W2949348780","https://openalex.org/W2949685204","https://openalex.org/W2960629037","https://openalex.org/W2973799538","https://openalex.org/W2975802621","https://openalex.org/W2976262693","https://openalex.org/W2979999916","https://openalex.org/W2981572887","https://openalex.org/W2984339599","https://openalex.org/W2994619710","https://openalex.org/W2997247224","https://openalex.org/W3007033512","https://openalex.org/W3010342349","https://openalex.org/W3011537067","https://openalex.org/W3027154163","https://openalex.org/W3034527519","https://openalex.org/W3037668068","https://openalex.org/W3093610272","https://openalex.org/W3127255754","https://openalex.org/W3129344265","https://openalex.org/W6609720006","https://openalex.org/W6633204899","https://openalex.org/W6639478124","https://openalex.org/W6769054620","https://openalex.org/W6780062285"],"related_works":["https://openalex.org/W2902329290","https://openalex.org/W2139872319","https://openalex.org/W2052355316","https://openalex.org/W2046964473","https://openalex.org/W2107880877","https://openalex.org/W2151182744","https://openalex.org/W2024490794","https://openalex.org/W1998349112","https://openalex.org/W2054863651","https://openalex.org/W2887851388"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":22},{"year":2024,"cited_by_count":13},{"year":2023,"cited_by_count":13},{"year":2022,"cited_by_count":9}],"updated_date":"2026-03-27T05:58:40.876381","created_date":"2025-10-10T00:00:00"}