{"id":"https://openalex.org/W3200079366","doi":"https://doi.org/10.1093/bioinformatics/btab657","title":"SWIMmeR: an R-based software to unveiling crucial nodes in complex biological networks","display_name":"SWIMmeR: an R-based software to unveiling crucial nodes in complex biological networks","publication_year":2021,"publication_date":"2021-09-10","ids":{"openalex":"https://openalex.org/W3200079366","doi":"https://doi.org/10.1093/bioinformatics/btab657","mag":"3200079366","pmid":"https://pubmed.ncbi.nlm.nih.gov/34524429"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btab657","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab657","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5043250067","display_name":"Paola Paci","orcid":"https://orcid.org/0000-0002-9393-2047"},"institutions":[{"id":"https://openalex.org/I4210155236","display_name":"National Research Council","ror":"https://ror.org/04zaypm56","country_code":"IT","type":"nonprofit","lineage":["https://openalex.org/I4210155236"]},{"id":"https://openalex.org/I4210162062","display_name":"Istituto di Analisi dei Sistemi ed Informatica Antonio Ruberti","ror":"https://ror.org/054ye0e45","country_code":"IT","type":"facility","lineage":["https://openalex.org/I4210155236","https://openalex.org/I4210162062"]},{"id":"https://openalex.org/I861853513","display_name":"Sapienza University of Rome","ror":"https://ror.org/02be6w209","country_code":"IT","type":"education","lineage":["https://openalex.org/I861853513"]}],"countries":["IT"],"is_corresponding":true,"raw_author_name":"Paola Paci","raw_affiliation_strings":["Dipartimento di Ingegneria Informatica, Automatica e Gestionale (DIAG) \"A. Ruberti\", Sapienza Universit\u00e0 di Roma Via Ariosto, 25 00185 Roma, Italia","Institute for Systems Analysis and Computer Science \u201cAntonio Ruberti\u201d, Dipartimento di Ingegneria, ICT e tecnologie per l'energia e i trasporti, National Research Council, Via dei Taurini 19 00185, Rome, Italy","Institute for Systems Analysis and Computer Science \"Antonio Ruberti\", Dipartimento di Ingegneria, ICT e tecnologie per l'energia e i trasporti, National Research Council, Via dei Taurini 19 00185, Rome, Italy"],"affiliations":[{"raw_affiliation_string":"Dipartimento di Ingegneria Informatica, Automatica e Gestionale (DIAG) \"A. Ruberti\", Sapienza Universit\u00e0 di Roma Via Ariosto, 25 00185 Roma, Italia","institution_ids":["https://openalex.org/I861853513"]},{"raw_affiliation_string":"Institute for Systems Analysis and Computer Science \u201cAntonio Ruberti\u201d, Dipartimento di Ingegneria, ICT e tecnologie per l'energia e i trasporti, National Research Council, Via dei Taurini 19 00185, Rome, Italy","institution_ids":["https://openalex.org/I4210162062","https://openalex.org/I4210155236"]},{"raw_affiliation_string":"Institute for Systems Analysis and Computer Science \"Antonio Ruberti\", Dipartimento di Ingegneria, ICT e tecnologie per l'energia e i trasporti, National Research Council, Via dei Taurini 19 00185, Rome, Italy","institution_ids":["https://openalex.org/I4210162062","https://openalex.org/I4210155236"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5054544519","display_name":"Giulia Fiscon","orcid":"https://orcid.org/0000-0002-3354-8203"},"institutions":[{"id":"https://openalex.org/I4210155236","display_name":"National Research Council","ror":"https://ror.org/04zaypm56","country_code":"IT","type":"nonprofit","lineage":["https://openalex.org/I4210155236"]},{"id":"https://openalex.org/I4210162062","display_name":"Istituto di Analisi dei Sistemi ed Informatica Antonio Ruberti","ror":"https://ror.org/054ye0e45","country_code":"IT","type":"facility","lineage":["https://openalex.org/I4210155236","https://openalex.org/I4210162062"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Giulia Fiscon","raw_affiliation_strings":["Fondazione per la Medicina Personalizzata , Via Goffredo Mameli, 3/116122 Genova, Italy","Institute for Systems Analysis and Computer Science \u201cAntonio Ruberti\u201d, Dipartimento di Ingegneria, ICT e tecnologie per l'energia e i trasporti, National Research Council, Via dei Taurini 19 00185, Rome, Italy","Institute for Systems Analysis and Computer Science \"Antonio Ruberti\", Dipartimento di Ingegneria, ICT e tecnologie per l'energia e i trasporti, National Research Council, Via dei Taurini 19 00185, Rome, Italy"],"affiliations":[{"raw_affiliation_string":"Fondazione per la Medicina Personalizzata , Via Goffredo Mameli, 3/116122 Genova, Italy","institution_ids":[]},{"raw_affiliation_string":"Institute for Systems Analysis and Computer Science \u201cAntonio Ruberti\u201d, Dipartimento di Ingegneria, ICT e tecnologie per l'energia e i trasporti, National Research Council, Via dei Taurini 19 00185, Rome, Italy","institution_ids":["https://openalex.org/I4210162062","https://openalex.org/I4210155236"]},{"raw_affiliation_string":"Institute for Systems Analysis and Computer Science \"Antonio Ruberti\", Dipartimento di Ingegneria, ICT e tecnologie per l'energia e i trasporti, National Research Council, Via dei Taurini 19 00185, Rome, Italy","institution_ids":["https://openalex.org/I4210162062","https://openalex.org/I4210155236"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5043250067"],"corresponding_institution_ids":["https://openalex.org/I4210155236","https://openalex.org/I4210162062","https://openalex.org/I861853513"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.8947,"has_fulltext":false,"cited_by_count":14,"citation_normalized_percentile":{"value":0.73199252,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"38","issue":"2","first_page":"586","last_page":"588"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.996399998664856,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.996399998664856,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10303","display_name":"Photosynthetic Processes and Mechanisms","score":0.9904999732971191,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11237","display_name":"Plant Gene Expression Analysis","score":0.9896000027656555,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7963292598724365},{"id":"https://openalex.org/keywords/license","display_name":"License","score":0.7403430342674255},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.6570724248886108},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.6386280059814453},{"id":"https://openalex.org/keywords/usability","display_name":"Usability","score":0.6140896081924438},{"id":"https://openalex.org/keywords/key","display_name":"Key (lock)","score":0.5384310483932495},{"id":"https://openalex.org/keywords/code","display_name":"Code (set theory)","score":0.5211113095283508},{"id":"https://openalex.org/keywords/open-source","display_name":"Open source","score":0.4694758355617523},{"id":"https://openalex.org/keywords/range","display_name":"Range (aeronautics)","score":0.46462708711624146},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.3957766890525818},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.3297238349914551},{"id":"https://openalex.org/keywords/human\u2013computer-interaction","display_name":"Human\u2013computer interaction","score":0.3249795138835907},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.2870732843875885},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.1267153024673462}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7963292598724365},{"id":"https://openalex.org/C2780560020","wikidata":"https://www.wikidata.org/wiki/Q79719","display_name":"License","level":2,"score":0.7403430342674255},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.6570724248886108},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.6386280059814453},{"id":"https://openalex.org/C170130773","wikidata":"https://www.wikidata.org/wiki/Q216378","display_name":"Usability","level":2,"score":0.6140896081924438},{"id":"https://openalex.org/C26517878","wikidata":"https://www.wikidata.org/wiki/Q228039","display_name":"Key (lock)","level":2,"score":0.5384310483932495},{"id":"https://openalex.org/C2776760102","wikidata":"https://www.wikidata.org/wiki/Q5139990","display_name":"Code (set theory)","level":3,"score":0.5211113095283508},{"id":"https://openalex.org/C3018397939","wikidata":"https://www.wikidata.org/wiki/Q3644502","display_name":"Open source","level":3,"score":0.4694758355617523},{"id":"https://openalex.org/C204323151","wikidata":"https://www.wikidata.org/wiki/Q905424","display_name":"Range (aeronautics)","level":2,"score":0.46462708711624146},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.3957766890525818},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.3297238349914551},{"id":"https://openalex.org/C107457646","wikidata":"https://www.wikidata.org/wiki/Q207434","display_name":"Human\u2013computer interaction","level":1,"score":0.3249795138835907},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.2870732843875885},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.1267153024673462},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.0},{"id":"https://openalex.org/C192562407","wikidata":"https://www.wikidata.org/wiki/Q228736","display_name":"Materials science","level":0,"score":0.0},{"id":"https://openalex.org/C159985019","wikidata":"https://www.wikidata.org/wiki/Q181790","display_name":"Composite material","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btab657","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab657","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:34524429","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/34524429","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:iris.uniroma1.it:11573/1610414","is_oa":false,"landing_page_url":"http://hdl.handle.net/11573/1610414","pdf_url":null,"source":{"id":"https://openalex.org/S4377196107","display_name":"IRIS Research product catalog (Sapienza University of Rome)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/3","score":0.47999998927116394,"display_name":"Good health and well-being"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":14,"referenced_works":["https://openalex.org/W2036870885","https://openalex.org/W2108688211","https://openalex.org/W2150462335","https://openalex.org/W2602233541","https://openalex.org/W2803640928","https://openalex.org/W2902764977","https://openalex.org/W2921809641","https://openalex.org/W3008634797","https://openalex.org/W3082877515","https://openalex.org/W3085917261","https://openalex.org/W3123028737","https://openalex.org/W3139978982","https://openalex.org/W3154185841","https://openalex.org/W3184430035"],"related_works":["https://openalex.org/W3081674575","https://openalex.org/W4287673983","https://openalex.org/W2113128227","https://openalex.org/W632256878","https://openalex.org/W4211197663","https://openalex.org/W2491403535","https://openalex.org/W3081644756","https://openalex.org/W3123068371","https://openalex.org/W2479811461","https://openalex.org/W2104915799"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":4},{"year":2022,"cited_by_count":4},{"year":2021,"cited_by_count":1}],"updated_date":"2026-04-02T15:55:50.835912","created_date":"2025-10-10T00:00:00"}
