{"id":"https://openalex.org/W3194942089","doi":"https://doi.org/10.1093/bioinformatics/btab617","title":"ProteinEvolverABC: coestimation of recombination and substitution rates in protein sequences by approximate Bayesian computation","display_name":"ProteinEvolverABC: coestimation of recombination and substitution rates in protein sequences by approximate Bayesian computation","publication_year":2021,"publication_date":"2021-08-27","ids":{"openalex":"https://openalex.org/W3194942089","doi":"https://doi.org/10.1093/bioinformatics/btab617","mag":"3194942089","pmid":"https://pubmed.ncbi.nlm.nih.gov/34450622"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btab617","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab617","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/38/1/58/41891065/btab617.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/38/1/58/41891065/btab617.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5037761662","display_name":"Miguel Arenas","orcid":"https://orcid.org/0000-0002-0516-2717"},"institutions":[{"id":"https://openalex.org/I4210091478","display_name":"Galicia Sur Biomedical Foundation","ror":"https://ror.org/00jdfsf63","country_code":"ES","type":"other","lineage":["https://openalex.org/I4210091478"]},{"id":"https://openalex.org/I6289922","display_name":"Universidade de Vigo","ror":"https://ror.org/05rdf8595","country_code":"ES","type":"education","lineage":["https://openalex.org/I6289922"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"Miguel Arenas","raw_affiliation_strings":["CINBIO, Universidade de Vigo, 36310 Vigo, Spain","Galicia Sur Health Research Institute (IIS Galicia Sur) , 36310 Vigo, Spain","Universidade de Vigo, Departamento de Bioquimica, Xenetica e Inmunoloxia, 36310 Vigo, Spain"],"affiliations":[{"raw_affiliation_string":"CINBIO, Universidade de Vigo, 36310 Vigo, Spain","institution_ids":["https://openalex.org/I6289922"]},{"raw_affiliation_string":"Galicia Sur Health Research Institute (IIS Galicia Sur) , 36310 Vigo, Spain","institution_ids":["https://openalex.org/I4210091478"]},{"raw_affiliation_string":"Universidade de Vigo, Departamento de Bioquimica, Xenetica e Inmunoloxia, 36310 Vigo, Spain","institution_ids":["https://openalex.org/I6289922"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5037761662"],"corresponding_institution_ids":["https://openalex.org/I4210091478","https://openalex.org/I6289922"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":0.4827,"has_fulltext":false,"cited_by_count":7,"citation_normalized_percentile":{"value":0.61770006,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"38","issue":"1","first_page":"58","last_page":"64"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11764","display_name":"Evolution and Genetic Dynamics","score":0.9976999759674072,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9951000213623047,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/substitution","display_name":"Substitution (logic)","score":0.7577311992645264},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6406641602516174},{"id":"https://openalex.org/keywords/bayesian-probability","display_name":"Bayesian probability","score":0.5649099349975586},{"id":"https://openalex.org/keywords/approximate-bayesian-computation","display_name":"Approximate Bayesian computation","score":0.5412374138832092},{"id":"https://openalex.org/keywords/selection","display_name":"Selection (genetic algorithm)","score":0.4938984513282776},{"id":"https://openalex.org/keywords/computation","display_name":"Computation","score":0.48774176836013794},{"id":"https://openalex.org/keywords/evolutionary-algorithm","display_name":"Evolutionary algorithm","score":0.41216689348220825},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3724675476551056},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.35597601532936096},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.33615800738334656},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.25007933378219604},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.2354174256324768},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.23038333654403687},{"id":"https://openalex.org/keywords/inference","display_name":"Inference","score":0.13422295451164246},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.11195608973503113}],"concepts":[{"id":"https://openalex.org/C2778220771","wikidata":"https://www.wikidata.org/wiki/Q1522579","display_name":"Substitution (logic)","level":2,"score":0.7577311992645264},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6406641602516174},{"id":"https://openalex.org/C107673813","wikidata":"https://www.wikidata.org/wiki/Q812534","display_name":"Bayesian probability","level":2,"score":0.5649099349975586},{"id":"https://openalex.org/C2779377595","wikidata":"https://www.wikidata.org/wiki/Q21045424","display_name":"Approximate Bayesian computation","level":3,"score":0.5412374138832092},{"id":"https://openalex.org/C81917197","wikidata":"https://www.wikidata.org/wiki/Q628760","display_name":"Selection (genetic algorithm)","level":2,"score":0.4938984513282776},{"id":"https://openalex.org/C45374587","wikidata":"https://www.wikidata.org/wiki/Q12525525","display_name":"Computation","level":2,"score":0.48774176836013794},{"id":"https://openalex.org/C159149176","wikidata":"https://www.wikidata.org/wiki/Q14489129","display_name":"Evolutionary algorithm","level":2,"score":0.41216689348220825},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3724675476551056},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.35597601532936096},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.33615800738334656},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.25007933378219604},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.2354174256324768},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.23038333654403687},{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.13422295451164246},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.11195608973503113}],"mesh":[{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011995","descriptor_name":"Recombination, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011995","descriptor_name":"Recombination, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011995","descriptor_name":"Recombination, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011995","descriptor_name":"Recombination, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":5,"locations":[{"id":"doi:10.1093/bioinformatics/btab617","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab617","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/38/1/58/41891065/btab617.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:34450622","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/34450622","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:investigo.biblioteca.uvigo.es:11093/3125","is_oa":true,"landing_page_url":"https://academic.oup.com/bioinformatics/article/38/1/58/6358715","pdf_url":null,"source":{"id":"https://openalex.org/S4306400306","display_name":"Investigo repository of University of Vigo (University of Vigo)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I2802353815","host_organization_name":"University Hospital Complex Of Vigo","host_organization_lineage":["https://openalex.org/I2802353815"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:8696103","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8696103","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:www.investigo.biblioteca.uvigo.es:11093/3125","is_oa":true,"landing_page_url":"http://hdl.handle.net/11093/3125","pdf_url":null,"source":{"id":"https://openalex.org/S4377196408","display_name":"Investigo Institutional repository of UVigo (Universidade de Vigo)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I6289922","host_organization_name":"Universidade de Vigo","host_organization_lineage":["https://openalex.org/I6289922"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btab617","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab617","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/38/1/58/41891065/btab617.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3194942089.pdf","grobid_xml":"https://content.openalex.org/works/W3194942089.grobid-xml"},"referenced_works_count":89,"referenced_works":["https://openalex.org/W197896231","https://openalex.org/W1626704411","https://openalex.org/W1920973730","https://openalex.org/W1936034247","https://openalex.org/W1962960380","https://openalex.org/W1964735403","https://openalex.org/W1965175390","https://openalex.org/W1966522287","https://openalex.org/W1973101413","https://openalex.org/W1973667633","https://openalex.org/W1992579032","https://openalex.org/W1993210385","https://openalex.org/W1999104032","https://openalex.org/W2005412543","https://openalex.org/W2013437827","https://openalex.org/W2013669585","https://openalex.org/W2015085014","https://openalex.org/W2015828874","https://openalex.org/W2017519756","https://openalex.org/W2019956985","https://openalex.org/W2032452247","https://openalex.org/W2032769232","https://openalex.org/W2043654227","https://openalex.org/W2053117659","https://openalex.org/W2056005674","https://openalex.org/W2061862213","https://openalex.org/W2063839249","https://openalex.org/W2085474307","https://openalex.org/W2085960176","https://openalex.org/W2091181646","https://openalex.org/W2092339835","https://openalex.org/W2108504053","https://openalex.org/W2109383491","https://openalex.org/W2109864391","https://openalex.org/W2111534865","https://openalex.org/W2113551702","https://openalex.org/W2116416291","https://openalex.org/W2124790653","https://openalex.org/W2130007916","https://openalex.org/W2130824586","https://openalex.org/W2131408740","https://openalex.org/W2139058004","https://openalex.org/W2139134537","https://openalex.org/W2139310526","https://openalex.org/W2139948235","https://openalex.org/W2145897295","https://openalex.org/W2147526198","https://openalex.org/W2147961425","https://openalex.org/W2152528032","https://openalex.org/W2155196220","https://openalex.org/W2155645165","https://openalex.org/W2156984627","https://openalex.org/W2158418636","https://openalex.org/W2159927403","https://openalex.org/W2160378127","https://openalex.org/W2161618969","https://openalex.org/W2162168100","https://openalex.org/W2165892911","https://openalex.org/W2165912261","https://openalex.org/W2165974744","https://openalex.org/W2167030304","https://openalex.org/W2169079604","https://openalex.org/W2186750819","https://openalex.org/W2345988829","https://openalex.org/W2496306446","https://openalex.org/W2568937766","https://openalex.org/W2897701522","https://openalex.org/W2901954177","https://openalex.org/W2941366761","https://openalex.org/W2946894699","https://openalex.org/W2994301183","https://openalex.org/W3012182955","https://openalex.org/W3031982697","https://openalex.org/W3048725132","https://openalex.org/W3102837950","https://openalex.org/W3111295936","https://openalex.org/W3125909203","https://openalex.org/W3155075444","https://openalex.org/W3169881791","https://openalex.org/W4210633230","https://openalex.org/W4230357098","https://openalex.org/W4236563678","https://openalex.org/W4249478743","https://openalex.org/W4255959592","https://openalex.org/W6640287769","https://openalex.org/W6649554704","https://openalex.org/W6654563908","https://openalex.org/W6683859800","https://openalex.org/W6731392063"],"related_works":["https://openalex.org/W3124497799","https://openalex.org/W2226294016","https://openalex.org/W3047807024","https://openalex.org/W3014258782","https://openalex.org/W4241947739","https://openalex.org/W2788616582","https://openalex.org/W24509564","https://openalex.org/W2015480483","https://openalex.org/W2113759402","https://openalex.org/W2949074946"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":3},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":1}],"updated_date":"2026-02-25T23:00:34.991745","created_date":"2025-10-10T00:00:00"}
