{"id":"https://openalex.org/W3188737142","doi":"https://doi.org/10.1093/bioinformatics/btab586","title":"<i>ramr</i> : an R/Bioconductor package for detection of rare aberrantly methylated regions","display_name":"<i>ramr</i> : an R/Bioconductor package for detection of rare aberrantly methylated regions","publication_year":2021,"publication_date":"2021-08-11","ids":{"openalex":"https://openalex.org/W3188737142","doi":"https://doi.org/10.1093/bioinformatics/btab586","mag":"3188737142","pmid":"https://pubmed.ncbi.nlm.nih.gov/34383893"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btab586","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab586","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/38/1/133/41891049/btab586.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/38/1/133/41891049/btab586.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5006056961","display_name":"Oleksii Nikolaienko","orcid":"https://orcid.org/0000-0002-5910-4934"},"institutions":[{"id":"https://openalex.org/I4432739","display_name":"University of Bergen","ror":"https://ror.org/03zga2b32","country_code":"NO","type":"education","lineage":["https://openalex.org/I4432739"]}],"countries":["NO"],"is_corresponding":true,"raw_author_name":"Oleksii Nikolaienko","raw_affiliation_strings":["K. G. Jebsen Center for Genome-Directed Cancer Therapy, Department of Clinical Science, University of Bergen , Bergen, Norway"],"affiliations":[{"raw_affiliation_string":"K. G. Jebsen Center for Genome-Directed Cancer Therapy, Department of Clinical Science, University of Bergen , Bergen, Norway","institution_ids":["https://openalex.org/I4432739"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5035837487","display_name":"Per Eystein L\u00f8nning","orcid":"https://orcid.org/0000-0002-8890-6303"},"institutions":[{"id":"https://openalex.org/I2800740805","display_name":"Haukeland University Hospital","ror":"https://ror.org/03np4e098","country_code":"NO","type":"healthcare","lineage":["https://openalex.org/I2800740805"]},{"id":"https://openalex.org/I4432739","display_name":"University of Bergen","ror":"https://ror.org/03zga2b32","country_code":"NO","type":"education","lineage":["https://openalex.org/I4432739"]}],"countries":["NO"],"is_corresponding":false,"raw_author_name":"Per Eystein L\u00f8nning","raw_affiliation_strings":["Department of Oncology, Haukeland University Hospital , Bergen, Norway","K. G. Jebsen Center for Genome-Directed Cancer Therapy, Department of Clinical Science, University of Bergen , Bergen, Norway"],"affiliations":[{"raw_affiliation_string":"Department of Oncology, Haukeland University Hospital , Bergen, Norway","institution_ids":["https://openalex.org/I2800740805"]},{"raw_affiliation_string":"K. G. Jebsen Center for Genome-Directed Cancer Therapy, Department of Clinical Science, University of Bergen , Bergen, Norway","institution_ids":["https://openalex.org/I4432739"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5064953838","display_name":"Stian Knappskog","orcid":"https://orcid.org/0000-0002-4153-1655"},"institutions":[{"id":"https://openalex.org/I2800740805","display_name":"Haukeland University Hospital","ror":"https://ror.org/03np4e098","country_code":"NO","type":"healthcare","lineage":["https://openalex.org/I2800740805"]},{"id":"https://openalex.org/I4432739","display_name":"University of Bergen","ror":"https://ror.org/03zga2b32","country_code":"NO","type":"education","lineage":["https://openalex.org/I4432739"]}],"countries":["NO"],"is_corresponding":false,"raw_author_name":"Stian Knappskog","raw_affiliation_strings":["Department of Oncology, Haukeland University Hospital , Bergen, Norway","K. G. Jebsen Center for Genome-Directed Cancer Therapy, Department of Clinical Science, University of Bergen , Bergen, Norway"],"affiliations":[{"raw_affiliation_string":"Department of Oncology, Haukeland University Hospital , Bergen, Norway","institution_ids":["https://openalex.org/I2800740805"]},{"raw_affiliation_string":"K. G. Jebsen Center for Genome-Directed Cancer Therapy, Department of Clinical Science, University of Bergen , Bergen, Norway","institution_ids":["https://openalex.org/I4432739"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5006056961"],"corresponding_institution_ids":["https://openalex.org/I4432739"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.1609,"has_fulltext":false,"cited_by_count":3,"citation_normalized_percentile":{"value":0.48536813,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":95},"biblio":{"volume":"38","issue":"1","first_page":"133","last_page":"140"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10269","display_name":"Epigenetics and DNA Methylation","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10269","display_name":"Epigenetics and DNA Methylation","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13157","display_name":"Cancer-related gene regulation","score":0.9818000197410583,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/bioconductor","display_name":"Bioconductor","score":0.9726623296737671},{"id":"https://openalex.org/keywords/r-package","display_name":"R package","score":0.6752846240997314},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5554707646369934},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.47070786356925964},{"id":"https://openalex.org/keywords/software-package","display_name":"Software package","score":0.4396738111972809},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3953331708908081},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2522770166397095},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.24213877320289612},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.1548183262348175},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.06843447685241699}],"concepts":[{"id":"https://openalex.org/C2779694297","wikidata":"https://www.wikidata.org/wiki/Q2888953","display_name":"Bioconductor","level":3,"score":0.9726623296737671},{"id":"https://openalex.org/C2984074130","wikidata":"https://www.wikidata.org/wiki/Q73539779","display_name":"R package","level":2,"score":0.6752846240997314},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5554707646369934},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.47070786356925964},{"id":"https://openalex.org/C3020440742","wikidata":"https://www.wikidata.org/wiki/Q1176855","display_name":"Software package","level":3,"score":0.4396738111972809},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3953331708908081},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2522770166397095},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.24213877320289612},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.1548183262348175},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.06843447685241699}],"mesh":[{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011499","descriptor_name":"Protein Processing, Post-Translational","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011499","descriptor_name":"Protein Processing, Post-Translational","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011499","descriptor_name":"Protein Processing, Post-Translational","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019175","descriptor_name":"DNA Methylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019175","descriptor_name":"DNA Methylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019175","descriptor_name":"DNA Methylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btab586","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab586","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/38/1/133/41891049/btab586.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:34383893","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/34383893","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:8696093","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8696093","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btab586","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab586","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/38/1/133/41891049/btab586.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.6200000047683716,"id":"https://metadata.un.org/sdg/3","display_name":"Good health and well-being"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320310758","display_name":"Kreftforeningen","ror":"https://ror.org/01925vb10"},{"id":"https://openalex.org/F4320323299","display_name":"Norges Forskningsr\u00e5d","ror":"https://ror.org/00epmv149"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3188737142.pdf","grobid_xml":"https://content.openalex.org/works/W3188737142.grobid-xml"},"referenced_works_count":70,"referenced_works":["https://openalex.org/W1906098099","https://openalex.org/W1963480915","https://openalex.org/W1964278453","https://openalex.org/W1974439810","https://openalex.org/W1975528145","https://openalex.org/W1996802091","https://openalex.org/W2003056152","https://openalex.org/W2027641687","https://openalex.org/W2045655127","https://openalex.org/W2049831339","https://openalex.org/W2051219434","https://openalex.org/W2067120008","https://openalex.org/W2076154138","https://openalex.org/W2085040479","https://openalex.org/W2101870168","https://openalex.org/W2112170577","https://openalex.org/W2123929789","https://openalex.org/W2129958809","https://openalex.org/W2130752875","https://openalex.org/W2134555277","https://openalex.org/W2136895197","https://openalex.org/W2146512944","https://openalex.org/W2150936392","https://openalex.org/W2156124720","https://openalex.org/W2157043395","https://openalex.org/W2184563578","https://openalex.org/W2273762313","https://openalex.org/W2292471383","https://openalex.org/W2295145357","https://openalex.org/W2305364952","https://openalex.org/W2319468801","https://openalex.org/W2339299710","https://openalex.org/W2341329616","https://openalex.org/W2341474791","https://openalex.org/W2426586472","https://openalex.org/W2529024004","https://openalex.org/W2537310520","https://openalex.org/W2567721002","https://openalex.org/W2738417872","https://openalex.org/W2761133874","https://openalex.org/W2782821972","https://openalex.org/W2789727733","https://openalex.org/W2801872537","https://openalex.org/W2806571245","https://openalex.org/W2830752343","https://openalex.org/W2886168517","https://openalex.org/W2887847409","https://openalex.org/W2889050153","https://openalex.org/W2889571716","https://openalex.org/W2900423390","https://openalex.org/W2901780357","https://openalex.org/W2920628741","https://openalex.org/W2931332940","https://openalex.org/W2941284567","https://openalex.org/W2944955304","https://openalex.org/W2971310570","https://openalex.org/W2974297900","https://openalex.org/W2976399766","https://openalex.org/W2983071493","https://openalex.org/W2983548163","https://openalex.org/W2999309192","https://openalex.org/W3000927381","https://openalex.org/W3005992072","https://openalex.org/W3012116240","https://openalex.org/W3014039575","https://openalex.org/W3113573191","https://openalex.org/W3126232929","https://openalex.org/W4236700646","https://openalex.org/W6728994268","https://openalex.org/W6753145938"],"related_works":["https://openalex.org/W2982252354","https://openalex.org/W2728564446","https://openalex.org/W3045904767","https://openalex.org/W2161868542","https://openalex.org/W3156537409","https://openalex.org/W2140163842","https://openalex.org/W2747931568","https://openalex.org/W2921090651","https://openalex.org/W2792883187","https://openalex.org/W2098339479"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":1}],"updated_date":"2025-11-23T05:10:03.516525","created_date":"2021-08-16T00:00:00"}
