{"id":"https://openalex.org/W3193975400","doi":"https://doi.org/10.1093/bioinformatics/btab571","title":"DAMA: a method for computing multiple alignments of protein structures using local structure descriptors","display_name":"DAMA: a method for computing multiple alignments of protein structures using local structure descriptors","publication_year":2021,"publication_date":"2021-08-12","ids":{"openalex":"https://openalex.org/W3193975400","doi":"https://doi.org/10.1093/bioinformatics/btab571","mag":"3193975400","pmid":"https://pubmed.ncbi.nlm.nih.gov/34396393"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btab571","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab571","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/38/1/80/41891077/btab571.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/38/1/80/41891077/btab571.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5042959568","display_name":"Pawe\u0142 Daniluk","orcid":"https://orcid.org/0000-0002-2316-6586"},"institutions":[{"id":"https://openalex.org/I4210157213","display_name":"Mossakowski Medical Research Institute,  Polish Academy of Sciences","ror":"https://ror.org/05d3ntb42","country_code":"PL","type":"facility","lineage":["https://openalex.org/I4210157213","https://openalex.org/I99542240"]},{"id":"https://openalex.org/I99542240","display_name":"Polish Academy of Sciences","ror":"https://ror.org/01dr6c206","country_code":"PL","type":"government","lineage":["https://openalex.org/I99542240"]}],"countries":["PL"],"is_corresponding":false,"raw_author_name":"Pawe\u0142 Daniluk","raw_affiliation_strings":["Bioinformatics Laboratory, Mossakowski Medical Research Centre, Polish Academy of Sciences , 02-106 Warsaw, Poland"],"affiliations":[{"raw_affiliation_string":"Bioinformatics Laboratory, Mossakowski Medical Research Centre, Polish Academy of Sciences , 02-106 Warsaw, Poland","institution_ids":["https://openalex.org/I4210157213","https://openalex.org/I99542240"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025389234","display_name":"Tymoteusz Oleniecki","orcid":null},"institutions":[{"id":"https://openalex.org/I4210161028","display_name":"College of Europe, Warsaw","ror":"https://ror.org/055560x25","country_code":"PL","type":"education","lineage":["https://openalex.org/I172363630","https://openalex.org/I4210161028"]},{"id":"https://openalex.org/I4654613","display_name":"University of Warsaw","ror":"https://ror.org/039bjqg32","country_code":"PL","type":"education","lineage":["https://openalex.org/I4654613"]}],"countries":["PL"],"is_corresponding":false,"raw_author_name":"Tymoteusz Oleniecki","raw_affiliation_strings":["College of Inter-Faculty Individual Studies in Mathematics and Natural Sciences, University of Warsaw , 02-089 Warsaw, Poland"],"affiliations":[{"raw_affiliation_string":"College of Inter-Faculty Individual Studies in Mathematics and Natural Sciences, University of Warsaw , 02-089 Warsaw, Poland","institution_ids":["https://openalex.org/I4210161028","https://openalex.org/I4654613"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5033203327","display_name":"Bogdan Lesyng","orcid":"https://orcid.org/0000-0002-5528-902X"},"institutions":[{"id":"https://openalex.org/I4654613","display_name":"University of Warsaw","ror":"https://ror.org/039bjqg32","country_code":"PL","type":"education","lineage":["https://openalex.org/I4654613"]}],"countries":["PL"],"is_corresponding":true,"raw_author_name":"Bogdan Lesyng","raw_affiliation_strings":["Department of Biophysics, Faculty of Physics, University of Warsaw , 02-093 Warsaw, Poland"],"affiliations":[{"raw_affiliation_string":"Department of Biophysics, Faculty of Physics, University of Warsaw , 02-093 Warsaw, Poland","institution_ids":["https://openalex.org/I4654613"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5033203327"],"corresponding_institution_ids":["https://openalex.org/I4654613"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":0.2434,"has_fulltext":false,"cited_by_count":3,"citation_normalized_percentile":{"value":0.53068623,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":"38","issue":"1","first_page":"80","last_page":"85"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.9980000257492065,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9923999905586243,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7118451595306396},{"id":"https://openalex.org/keywords/smith\u2013waterman-algorithm","display_name":"Smith\u2013Waterman algorithm","score":0.5120683312416077},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.4477725028991699},{"id":"https://openalex.org/keywords/protein-structure","display_name":"Protein structure","score":0.4128764271736145},{"id":"https://openalex.org/keywords/sequence-alignment","display_name":"Sequence alignment","score":0.3886638283729553},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.37719404697418213},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3361482322216034},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1318630576133728},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.12843415141105652},{"id":"https://openalex.org/keywords/peptide-sequence","display_name":"Peptide sequence","score":0.10361817479133606},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.08446860313415527},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.05389261245727539}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7118451595306396},{"id":"https://openalex.org/C72802188","wikidata":"https://www.wikidata.org/wiki/Q1683352","display_name":"Smith\u2013Waterman algorithm","level":5,"score":0.5120683312416077},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.4477725028991699},{"id":"https://openalex.org/C47701112","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Protein structure","level":2,"score":0.4128764271736145},{"id":"https://openalex.org/C45484198","wikidata":"https://www.wikidata.org/wiki/Q827246","display_name":"Sequence alignment","level":4,"score":0.3886638283729553},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.37719404697418213},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3361482322216034},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1318630576133728},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.12843415141105652},{"id":"https://openalex.org/C167625842","wikidata":"https://www.wikidata.org/wiki/Q899763","display_name":"Peptide sequence","level":3,"score":0.10361817479133606},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.08446860313415527},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.05389261245727539},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btab571","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab571","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/38/1/80/41891077/btab571.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:34396393","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/34396393","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:8696102","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8696102","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btab571","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab571","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/38/1/80/41891077/btab571.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/10","score":0.41999998688697815,"display_name":"Reduced inequalities"}],"awards":[{"id":"https://openalex.org/G3347466645","display_name":null,"funder_award_id":"POIG.02.03.00-00-003/09","funder_id":"https://openalex.org/F4320322914","funder_display_name":"Instytut Medycyny Doswiadczalnej i Klinicznej im. M. Mossakowskiego, Polskiej Akademii Nauk"},{"id":"https://openalex.org/G5868545928","display_name":null,"funder_award_id":"PP/BF-501-D111-01-1110102","funder_id":"https://openalex.org/F4320322914","funder_display_name":"Instytut Medycyny Doswiadczalnej i Klinicznej im. M. Mossakowskiego, Polskiej Akademii Nauk"},{"id":"https://openalex.org/G6278512139","display_name":null,"funder_award_id":"Z-526/22","funder_id":"https://openalex.org/F4320322914","funder_display_name":"Instytut Medycyny Doswiadczalnej i Klinicznej im. M. Mossakowskiego, Polskiej Akademii Nauk"}],"funders":[{"id":"https://openalex.org/F4320322914","display_name":"Instytut Medycyny Doswiadczalnej i Klinicznej im. M. Mossakowskiego, Polskiej Akademii Nauk","ror":"https://ror.org/05d3ntb42"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3193975400.pdf","grobid_xml":"https://content.openalex.org/works/W3193975400.grobid-xml"},"referenced_works_count":29,"referenced_works":["https://openalex.org/W1967538863","https://openalex.org/W1973503184","https://openalex.org/W1988259820","https://openalex.org/W2006754101","https://openalex.org/W2018207366","https://openalex.org/W2031901496","https://openalex.org/W2060063308","https://openalex.org/W2062183533","https://openalex.org/W2068580350","https://openalex.org/W2095265465","https://openalex.org/W2097767833","https://openalex.org/W2098972483","https://openalex.org/W2108067237","https://openalex.org/W2115451817","https://openalex.org/W2125728871","https://openalex.org/W2126996906","https://openalex.org/W2129757128","https://openalex.org/W2145749080","https://openalex.org/W2147853461","https://openalex.org/W2149222384","https://openalex.org/W2149454052","https://openalex.org/W2159774316","https://openalex.org/W2161072217","https://openalex.org/W2161151688","https://openalex.org/W2168964504","https://openalex.org/W2780263532","https://openalex.org/W3016020348","https://openalex.org/W4244145013","https://openalex.org/W6667647971"],"related_works":["https://openalex.org/W2948014085","https://openalex.org/W2004215917","https://openalex.org/W2103737249","https://openalex.org/W1974956921","https://openalex.org/W2139695554","https://openalex.org/W1972247471","https://openalex.org/W1486249959","https://openalex.org/W2166325055","https://openalex.org/W2885386129","https://openalex.org/W2089499735"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":1}],"updated_date":"2026-03-27T05:58:40.876381","created_date":"2025-10-10T00:00:00"}
