{"id":"https://openalex.org/W3183190110","doi":"https://doi.org/10.1093/bioinformatics/btab557","title":"spheresDT/Mpacts-PiCS: cell tracking and shape retrieval in membrane-labeled embryos","display_name":"spheresDT/Mpacts-PiCS: cell tracking and shape retrieval in membrane-labeled embryos","publication_year":2021,"publication_date":"2021-07-28","ids":{"openalex":"https://openalex.org/W3183190110","doi":"https://doi.org/10.1093/bioinformatics/btab557","mag":"3183190110","pmid":"https://pubmed.ncbi.nlm.nih.gov/34329378"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btab557","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab557","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/37/24/4851/41726659/btab557.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/37/24/4851/41726659/btab557.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5017112766","display_name":"Wim Thiels","orcid":"https://orcid.org/0000-0003-3183-6209"},"institutions":[{"id":"https://openalex.org/I99464096","display_name":"KU Leuven","ror":"https://ror.org/05f950310","country_code":"BE","type":"education","lineage":["https://openalex.org/I99464096"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Wim Thiels","raw_affiliation_strings":["CMPG, M2S Department, KU Leuven , Heverlee 3001, Belgium"],"affiliations":[{"raw_affiliation_string":"CMPG, M2S Department, KU Leuven , Heverlee 3001, Belgium","institution_ids":["https://openalex.org/I99464096"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101641974","display_name":"Bart Smeets","orcid":"https://orcid.org/0000-0001-8753-781X"},"institutions":[{"id":"https://openalex.org/I99464096","display_name":"KU Leuven","ror":"https://ror.org/05f950310","country_code":"BE","type":"education","lineage":["https://openalex.org/I99464096"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Bart Smeets","raw_affiliation_strings":["MeBios, Department of Biosystems, KU Leuven , Heverlee 3001, Belgium"],"affiliations":[{"raw_affiliation_string":"MeBios, Department of Biosystems, KU Leuven , Heverlee 3001, Belgium","institution_ids":["https://openalex.org/I99464096"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5034935099","display_name":"Maxim Cuvelier","orcid":"https://orcid.org/0000-0003-1534-4247"},"institutions":[{"id":"https://openalex.org/I99464096","display_name":"KU Leuven","ror":"https://ror.org/05f950310","country_code":"BE","type":"education","lineage":["https://openalex.org/I99464096"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Maxim Cuvelier","raw_affiliation_strings":["MeBios, Department of Biosystems, KU Leuven , Heverlee 3001, Belgium"],"affiliations":[{"raw_affiliation_string":"MeBios, Department of Biosystems, KU Leuven , Heverlee 3001, Belgium","institution_ids":["https://openalex.org/I99464096"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5043429492","display_name":"Francesca Caroti","orcid":"https://orcid.org/0000-0003-4049-2663"},"institutions":[{"id":"https://openalex.org/I99464096","display_name":"KU Leuven","ror":"https://ror.org/05f950310","country_code":"BE","type":"education","lineage":["https://openalex.org/I99464096"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Francesca Caroti","raw_affiliation_strings":["CMPG, M2S Department, KU Leuven , Heverlee 3001, Belgium"],"affiliations":[{"raw_affiliation_string":"CMPG, M2S Department, KU Leuven , Heverlee 3001, Belgium","institution_ids":["https://openalex.org/I99464096"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5052006543","display_name":"Rob Jelier","orcid":"https://orcid.org/0000-0002-6395-1407"},"institutions":[{"id":"https://openalex.org/I99464096","display_name":"KU Leuven","ror":"https://ror.org/05f950310","country_code":"BE","type":"education","lineage":["https://openalex.org/I99464096"]}],"countries":["BE"],"is_corresponding":true,"raw_author_name":"Rob Jelier","raw_affiliation_strings":["CMPG, M2S Department, KU Leuven , Heverlee 3001, Belgium"],"affiliations":[{"raw_affiliation_string":"CMPG, M2S Department, KU Leuven , Heverlee 3001, Belgium","institution_ids":["https://openalex.org/I99464096"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5052006543"],"corresponding_institution_ids":["https://openalex.org/I99464096"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":1.444,"has_fulltext":false,"cited_by_count":21,"citation_normalized_percentile":{"value":0.79922006,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"37","issue":"24","first_page":"4851","last_page":"4856"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11190","display_name":"3D Printing in Biomedical Research","score":0.9962999820709229,"subfield":{"id":"https://openalex.org/subfields/2204","display_name":"Biomedical Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11190","display_name":"3D Printing in Biomedical Research","score":0.9962999820709229,"subfield":{"id":"https://openalex.org/subfields/2204","display_name":"Biomedical Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10505","display_name":"Pluripotent Stem Cells Research","score":0.9857000112533569,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10676","display_name":"Genetics, Aging, and Longevity in Model Organisms","score":0.9848999977111816,"subfield":{"id":"https://openalex.org/subfields/1302","display_name":"Aging"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/embryo","display_name":"Embryo","score":0.6104509830474854},{"id":"https://openalex.org/keywords/tracking","display_name":"Tracking (education)","score":0.5696015357971191},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5333917737007141},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.47521525621414185},{"id":"https://openalex.org/keywords/cell","display_name":"Cell","score":0.46116939187049866},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3690170347690582},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.3378854990005493},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.32433950901031494},{"id":"https://openalex.org/keywords/cell-biology","display_name":"Cell biology","score":0.3218187689781189},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.15983590483665466},{"id":"https://openalex.org/keywords/psychology","display_name":"Psychology","score":0.06420683860778809}],"concepts":[{"id":"https://openalex.org/C196843134","wikidata":"https://www.wikidata.org/wiki/Q33196","display_name":"Embryo","level":2,"score":0.6104509830474854},{"id":"https://openalex.org/C2775936607","wikidata":"https://www.wikidata.org/wiki/Q466845","display_name":"Tracking (education)","level":2,"score":0.5696015357971191},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5333917737007141},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.47521525621414185},{"id":"https://openalex.org/C1491633281","wikidata":"https://www.wikidata.org/wiki/Q7868","display_name":"Cell","level":2,"score":0.46116939187049866},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3690170347690582},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.3378854990005493},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.32433950901031494},{"id":"https://openalex.org/C95444343","wikidata":"https://www.wikidata.org/wiki/Q7141","display_name":"Cell biology","level":1,"score":0.3218187689781189},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.15983590483665466},{"id":"https://openalex.org/C15744967","wikidata":"https://www.wikidata.org/wiki/Q9418","display_name":"Psychology","level":0,"score":0.06420683860778809},{"id":"https://openalex.org/C19417346","wikidata":"https://www.wikidata.org/wiki/Q7922","display_name":"Pedagogy","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017173","descriptor_name":"Caenorhabditis elegans","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D017173","descriptor_name":"Caenorhabditis elegans","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D017173","descriptor_name":"Caenorhabditis elegans","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D058948","descriptor_name":"Cell Tracking","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D058948","descriptor_name":"Cell Tracking","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D058948","descriptor_name":"Cell Tracking","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btab557","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab557","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/37/24/4851/41726659/btab557.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:34329378","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/34329378","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:8665764","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8665764","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:lirias2repo.kuleuven.be:123456789/680139","is_oa":true,"landing_page_url":"https://lirias.kuleuven.be/bitstream/123456789/680139/2/paper_bioinformatics_format_v8.pdf","pdf_url":null,"source":{"id":"https://openalex.org/S4306401954","display_name":"Lirias (KU Leuven)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I99464096","host_organization_name":"KU Leuven","host_organization_lineage":["https://openalex.org/I99464096"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics, vol. 37 (24), (4851-4856)","raw_type":"info:eu-repo/semantics/publishedVersion"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btab557","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab557","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/37/24/4851/41726659/btab557.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1624997740","display_name":null,"funder_award_id":"C14/16/060","funder_id":"https://openalex.org/F4320322308","funder_display_name":"KU Leuven"}],"funders":[{"id":"https://openalex.org/F4320322308","display_name":"KU Leuven","ror":"https://ror.org/05f950310"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3183190110.pdf","grobid_xml":"https://content.openalex.org/works/W3183190110.grobid-xml"},"referenced_works_count":40,"referenced_works":["https://openalex.org/W1484144136","https://openalex.org/W1969697456","https://openalex.org/W1969883800","https://openalex.org/W1970646815","https://openalex.org/W1989952069","https://openalex.org/W2030233281","https://openalex.org/W2068939664","https://openalex.org/W2073498627","https://openalex.org/W2078823221","https://openalex.org/W2084140575","https://openalex.org/W2131002032","https://openalex.org/W2148743296","https://openalex.org/W2150151285","https://openalex.org/W2159960204","https://openalex.org/W2242515881","https://openalex.org/W2260455672","https://openalex.org/W2514088760","https://openalex.org/W2523164115","https://openalex.org/W2559903296","https://openalex.org/W2592920807","https://openalex.org/W2638573584","https://openalex.org/W2748188081","https://openalex.org/W2761518648","https://openalex.org/W2761837305","https://openalex.org/W2778730962","https://openalex.org/W2936719190","https://openalex.org/W2941636533","https://openalex.org/W2950115056","https://openalex.org/W2951900754","https://openalex.org/W2952548757","https://openalex.org/W2995108930","https://openalex.org/W3030248943","https://openalex.org/W3040925369","https://openalex.org/W3085722310","https://openalex.org/W3111747495","https://openalex.org/W3124745349","https://openalex.org/W3132879362","https://openalex.org/W3142362902","https://openalex.org/W6764205185","https://openalex.org/W6778127105"],"related_works":["https://openalex.org/W2320619678","https://openalex.org/W2084086966","https://openalex.org/W2394138874","https://openalex.org/W2027569400","https://openalex.org/W2417550541","https://openalex.org/W2023861399","https://openalex.org/W2316181775","https://openalex.org/W2409299309","https://openalex.org/W3165477948","https://openalex.org/W2366111318"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":6},{"year":2023,"cited_by_count":7},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":1}],"updated_date":"2026-04-21T08:09:41.155169","created_date":"2025-10-10T00:00:00"}