{"id":"https://openalex.org/W3183719453","doi":"https://doi.org/10.1093/bioinformatics/btab553","title":"The topology of data: opportunities for cancer research","display_name":"The topology of data: opportunities for cancer research","publication_year":2021,"publication_date":"2021-07-27","ids":{"openalex":"https://openalex.org/W3183719453","doi":"https://doi.org/10.1093/bioinformatics/btab553","mag":"3183719453","pmid":"https://pubmed.ncbi.nlm.nih.gov/34320632"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btab553","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab553","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/37/19/3091/40556700/btab553.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/37/19/3091/40556700/btab553.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5050861682","display_name":"Ciara F. Loughrey","orcid":"https://orcid.org/0000-0002-2295-1320"},"institutions":[{"id":"https://openalex.org/I126231945","display_name":"Queen's University Belfast","ror":"https://ror.org/00hswnk62","country_code":"GB","type":"education","lineage":["https://openalex.org/I126231945"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Ciara F Loughrey","raw_affiliation_strings":["School of Electronics, Electrical Engineering and Computer Science, Queen\u2019s University Belfast , Belfast, BT9 5BN, UK"],"affiliations":[{"raw_affiliation_string":"School of Electronics, Electrical Engineering and Computer Science, Queen\u2019s University Belfast , Belfast, BT9 5BN, UK","institution_ids":["https://openalex.org/I126231945"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062706479","display_name":"Padraig Fitzpatrick","orcid":"https://orcid.org/0000-0002-9950-8132"},"institutions":[{"id":"https://openalex.org/I126231945","display_name":"Queen's University Belfast","ror":"https://ror.org/00hswnk62","country_code":"GB","type":"education","lineage":["https://openalex.org/I126231945"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Padraig Fitzpatrick","raw_affiliation_strings":["School of Electronics, Electrical Engineering and Computer Science, Queen\u2019s University Belfast , Belfast, BT9 5BN, UK"],"affiliations":[{"raw_affiliation_string":"School of Electronics, Electrical Engineering and Computer Science, Queen\u2019s University Belfast , Belfast, BT9 5BN, UK","institution_ids":["https://openalex.org/I126231945"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5072820400","display_name":"Nick Orr","orcid":"https://orcid.org/0000-0003-2866-942X"},"institutions":[{"id":"https://openalex.org/I126231945","display_name":"Queen's University Belfast","ror":"https://ror.org/00hswnk62","country_code":"GB","type":"education","lineage":["https://openalex.org/I126231945"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Nick Orr","raw_affiliation_strings":["Patrick G Johnston Centre for Cancer Research, Queen\u2019s University Belfast , Belfast, BT9 7AE, UK"],"affiliations":[{"raw_affiliation_string":"Patrick G Johnston Centre for Cancer Research, Queen\u2019s University Belfast , Belfast, BT9 7AE, UK","institution_ids":["https://openalex.org/I126231945"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5055186478","display_name":"Anna Jurek","orcid":"https://orcid.org/0000-0002-7435-9134"},"institutions":[{"id":"https://openalex.org/I126231945","display_name":"Queen's University Belfast","ror":"https://ror.org/00hswnk62","country_code":"GB","type":"education","lineage":["https://openalex.org/I126231945"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Anna Jurek-Loughrey","raw_affiliation_strings":["School of Electronics, Electrical Engineering and Computer Science, Queen\u2019s University Belfast , Belfast, BT9 5BN, UK"],"affiliations":[{"raw_affiliation_string":"School of Electronics, Electrical Engineering and Computer Science, Queen\u2019s University Belfast , Belfast, BT9 5BN, UK","institution_ids":["https://openalex.org/I126231945"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5050861682"],"corresponding_institution_ids":["https://openalex.org/I126231945"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":4.0894,"has_fulltext":true,"cited_by_count":43,"citation_normalized_percentile":{"value":0.94438644,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":100},"biblio":{"volume":"37","issue":"19","first_page":"3091","last_page":"3098"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12536","display_name":"Topological and Geometric Data Analysis","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T12536","display_name":"Topological and Geometric Data Analysis","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9580000042915344,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T14364","display_name":"Clusterin in disease pathology","score":0.9399999976158142,"subfield":{"id":"https://openalex.org/subfields/2730","display_name":"Oncology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/topological-data-analysis","display_name":"Topological data analysis","score":0.7702248096466064},{"id":"https://openalex.org/keywords/field","display_name":"Field (mathematics)","score":0.5943714380264282},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5796478986740112},{"id":"https://openalex.org/keywords/curse-of-dimensionality","display_name":"Curse of dimensionality","score":0.5537265539169312},{"id":"https://openalex.org/keywords/construct","display_name":"Construct (python library)","score":0.5453583002090454},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.5057888031005859},{"id":"https://openalex.org/keywords/key","display_name":"Key (lock)","score":0.4623625874519348},{"id":"https://openalex.org/keywords/medical-research","display_name":"Medical research","score":0.4563158452510834},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.45132461190223694},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.2789475917816162},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.2139836847782135},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.19701743125915527},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.1660155951976776},{"id":"https://openalex.org/keywords/pathology","display_name":"Pathology","score":0.09225878119468689}],"concepts":[{"id":"https://openalex.org/C2776477805","wikidata":"https://www.wikidata.org/wiki/Q4460773","display_name":"Topological data analysis","level":2,"score":0.7702248096466064},{"id":"https://openalex.org/C9652623","wikidata":"https://www.wikidata.org/wiki/Q190109","display_name":"Field (mathematics)","level":2,"score":0.5943714380264282},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5796478986740112},{"id":"https://openalex.org/C111030470","wikidata":"https://www.wikidata.org/wiki/Q1430460","display_name":"Curse of dimensionality","level":2,"score":0.5537265539169312},{"id":"https://openalex.org/C2780801425","wikidata":"https://www.wikidata.org/wiki/Q5164392","display_name":"Construct (python library)","level":2,"score":0.5453583002090454},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.5057888031005859},{"id":"https://openalex.org/C26517878","wikidata":"https://www.wikidata.org/wiki/Q228039","display_name":"Key (lock)","level":2,"score":0.4623625874519348},{"id":"https://openalex.org/C106977388","wikidata":"https://www.wikidata.org/wiki/Q2752427","display_name":"Medical research","level":2,"score":0.4563158452510834},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.45132461190223694},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.2789475917816162},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.2139836847782135},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.19701743125915527},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.1660155951976776},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.09225878119468689},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C38652104","wikidata":"https://www.wikidata.org/wiki/Q3510521","display_name":"Computer security","level":1,"score":0.0},{"id":"https://openalex.org/C202444582","wikidata":"https://www.wikidata.org/wiki/Q837863","display_name":"Pure mathematics","level":1,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btab553","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab553","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/37/19/3091/40556700/btab553.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:34320632","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/34320632","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pure.qub.ac.uk/portal:openaire/acd607a0-a2b8-4fde-b444-7b4b952131de","is_oa":true,"landing_page_url":"https://pure.qub.ac.uk/en/publications/acd607a0-a2b8-4fde-b444-7b4b952131de","pdf_url":null,"source":{"id":"https://openalex.org/S4306402319","display_name":"Research Portal (Queen's University Belfast)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I126231945","host_organization_name":"Queen's University Belfast","host_organization_lineage":["https://openalex.org/I126231945"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Loughrey, C F, Fitzpatrick, P, Orr, N & Jurek-Loughrey, A 2021, 'The topology of data: opportunities for cancer research', Bioinformatics, vol. 37, no. 19, pp. 3091\u20133098. https://doi.org/10.1093/bioinformatics/btab553","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:pubmedcentral.nih.gov:8504620","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8504620","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btab553","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab553","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/37/19/3091/40556700/btab553.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.5799999833106995,"id":"https://metadata.un.org/sdg/4","display_name":"Quality Education"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320316531","display_name":"Department for the Economy","ror":"https://ror.org/0161w0r98"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3183719453.pdf","grobid_xml":"https://content.openalex.org/works/W3183719453.grobid-xml"},"referenced_works_count":97,"referenced_works":["https://openalex.org/W402335930","https://openalex.org/W844373902","https://openalex.org/W1530462586","https://openalex.org/W1559899545","https://openalex.org/W1599740911","https://openalex.org/W1611184842","https://openalex.org/W1753705553","https://openalex.org/W1839682376","https://openalex.org/W1880168459","https://openalex.org/W1966161686","https://openalex.org/W1967760180","https://openalex.org/W1971306820","https://openalex.org/W1972878768","https://openalex.org/W1978703991","https://openalex.org/W1980948656","https://openalex.org/W1989757660","https://openalex.org/W1991566301","https://openalex.org/W1999528235","https://openalex.org/W2003660259","https://openalex.org/W2015121141","https://openalex.org/W2017360110","https://openalex.org/W2101073541","https://openalex.org/W2107385756","https://openalex.org/W2111547563","https://openalex.org/W2112447569","https://openalex.org/W2140741853","https://openalex.org/W2143873179","https://openalex.org/W2144044408","https://openalex.org/W2148676644","https://openalex.org/W2154187696","https://openalex.org/W2170584976","https://openalex.org/W2261714614","https://openalex.org/W2340137273","https://openalex.org/W2408772186","https://openalex.org/W2435090885","https://openalex.org/W2438049444","https://openalex.org/W2474744642","https://openalex.org/W2505036509","https://openalex.org/W2545736115","https://openalex.org/W2563845466","https://openalex.org/W2566449107","https://openalex.org/W2593219267","https://openalex.org/W2621305858","https://openalex.org/W2725792925","https://openalex.org/W2733638363","https://openalex.org/W2752517284","https://openalex.org/W2791575870","https://openalex.org/W2794066488","https://openalex.org/W2797507693","https://openalex.org/W2805893819","https://openalex.org/W2887309543","https://openalex.org/W2897540743","https://openalex.org/W2902335845","https://openalex.org/W2912272156","https://openalex.org/W2945570991","https://openalex.org/W2951934944","https://openalex.org/W2952558006","https://openalex.org/W2956327617","https://openalex.org/W2963129226","https://openalex.org/W2963174546","https://openalex.org/W2963175648","https://openalex.org/W2963949702","https://openalex.org/W2964237352","https://openalex.org/W2969291417","https://openalex.org/W2971781734","https://openalex.org/W2976005502","https://openalex.org/W2978737563","https://openalex.org/W2980929630","https://openalex.org/W2981265119","https://openalex.org/W2993372100","https://openalex.org/W2995833348","https://openalex.org/W2998600559","https://openalex.org/W3000409346","https://openalex.org/W3004917954","https://openalex.org/W3013151148","https://openalex.org/W3014165171","https://openalex.org/W3014671498","https://openalex.org/W3045653183","https://openalex.org/W3045861332","https://openalex.org/W3100605491","https://openalex.org/W3101294892","https://openalex.org/W3102583149","https://openalex.org/W3165111153","https://openalex.org/W3202868818","https://openalex.org/W4301143711","https://openalex.org/W6643494134","https://openalex.org/W6650386534","https://openalex.org/W6651533712","https://openalex.org/W6676727762","https://openalex.org/W6694154208","https://openalex.org/W6724785267","https://openalex.org/W6739134814","https://openalex.org/W6740202369","https://openalex.org/W6745615463","https://openalex.org/W6749318804","https://openalex.org/W6755680288","https://openalex.org/W6767145764"],"related_works":["https://openalex.org/W2366107444","https://openalex.org/W4388145910","https://openalex.org/W2381570729","https://openalex.org/W1976205134","https://openalex.org/W4248336175","https://openalex.org/W2031260042","https://openalex.org/W2391445434","https://openalex.org/W3009369890","https://openalex.org/W4296209631","https://openalex.org/W2358812761"],"abstract_inverted_index":{"This":[0],"article":[1,27],"aims":[2],"to":[3,15,23,30],"provide":[4],"an":[5],"overview":[6],"of":[7,19],"TDA":[8,20,52],"in":[9],"Cancer":[10],"Research.":[11],"A":[12],"brief":[13],"introduction":[14],"the":[16,26,46],"main":[17],"concepts":[18],"is":[21,28,48],"provided":[22],"ensure":[24],"that":[25],"accessible":[29],"readers":[31],"who":[32],"are":[33],"not":[34],"familiar":[35],"with":[36],"this":[37],"field.":[38],"Following":[39],"this,":[40],"a":[41],"focussed":[42],"literature":[43],"review":[44],"on":[45],"field":[47],"presented,":[49],"discussing":[50],"how":[51],"has":[53],"been":[54],"applied":[55],"across":[56],"heterogeneous":[57],"datatypes":[58],"for":[59],"cancer":[60],"research.":[61]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":14},{"year":2024,"cited_by_count":14},{"year":2023,"cited_by_count":7},{"year":2022,"cited_by_count":5},{"year":2021,"cited_by_count":1}],"updated_date":"2026-04-21T08:09:41.155169","created_date":"2025-10-10T00:00:00"}
