{"id":"https://openalex.org/W3182110713","doi":"https://doi.org/10.1093/bioinformatics/btab522","title":"quincunx: an R package to query, download and wrangle PGS Catalog data","display_name":"quincunx: an R package to query, download and wrangle PGS Catalog data","publication_year":2021,"publication_date":"2021-07-12","ids":{"openalex":"https://openalex.org/W3182110713","doi":"https://doi.org/10.1093/bioinformatics/btab522","mag":"3182110713","pmid":"https://pubmed.ncbi.nlm.nih.gov/34270693"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btab522","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab522","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/38/1/294/41891024/btab522.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/38/1/294/41891024/btab522.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5079794370","display_name":"Ramiro Magno","orcid":"https://orcid.org/0000-0001-5226-3441"},"institutions":[{"id":"https://openalex.org/I4210121181","display_name":"Algarve Biomedical Center","ror":"https://ror.org/02rgrnk13","country_code":"PT","type":"facility","lineage":["https://openalex.org/I4210121181"]},{"id":"https://openalex.org/I4210137384","display_name":"Centre for Health Technology and Services Research","ror":"https://ror.org/0434vme59","country_code":"PT","type":"facility","lineage":["https://openalex.org/I4210137384"]},{"id":"https://openalex.org/I71503853","display_name":"University of Algarve","ror":"https://ror.org/014g34x36","country_code":"PT","type":"education","lineage":["https://openalex.org/I71503853"]}],"countries":["PT"],"is_corresponding":false,"raw_author_name":"Ramiro Magno","raw_affiliation_strings":["Algarve Biomedical Center (ABC), University of Algarve , Faro 8005-139, Portugal","Center for Research in Health Technologies and Information Systems (CINTESIS-UAlg), University of Algarve , Faro 8005-139, Portugal"],"affiliations":[{"raw_affiliation_string":"Algarve Biomedical Center (ABC), University of Algarve , Faro 8005-139, Portugal","institution_ids":["https://openalex.org/I4210121181","https://openalex.org/I71503853"]},{"raw_affiliation_string":"Center for Research in Health Technologies and Information Systems (CINTESIS-UAlg), University of Algarve , Faro 8005-139, Portugal","institution_ids":["https://openalex.org/I4210137384","https://openalex.org/I71503853"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101781914","display_name":"Isabel Duarte","orcid":"https://orcid.org/0000-0003-0060-2936"},"institutions":[{"id":"https://openalex.org/I4210121181","display_name":"Algarve Biomedical Center","ror":"https://ror.org/02rgrnk13","country_code":"PT","type":"facility","lineage":["https://openalex.org/I4210121181"]},{"id":"https://openalex.org/I4210137384","display_name":"Centre for Health Technology and Services Research","ror":"https://ror.org/0434vme59","country_code":"PT","type":"facility","lineage":["https://openalex.org/I4210137384"]},{"id":"https://openalex.org/I71503853","display_name":"University of Algarve","ror":"https://ror.org/014g34x36","country_code":"PT","type":"education","lineage":["https://openalex.org/I71503853"]}],"countries":["PT"],"is_corresponding":false,"raw_author_name":"Isabel Duarte","raw_affiliation_strings":["Algarve Biomedical Center (ABC), University of Algarve , Faro 8005-139, Portugal","Center for Research in Health Technologies and Information Systems (CINTESIS-UAlg), University of Algarve , Faro 8005-139, Portugal"],"affiliations":[{"raw_affiliation_string":"Algarve Biomedical Center (ABC), University of Algarve , Faro 8005-139, Portugal","institution_ids":["https://openalex.org/I4210121181","https://openalex.org/I71503853"]},{"raw_affiliation_string":"Center for Research in Health Technologies and Information Systems (CINTESIS-UAlg), University of Algarve , Faro 8005-139, Portugal","institution_ids":["https://openalex.org/I4210137384","https://openalex.org/I71503853"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5035891313","display_name":"Ana-Teresa Maia","orcid":"https://orcid.org/0000-0002-0454-9207"},"institutions":[{"id":"https://openalex.org/I4210121181","display_name":"Algarve Biomedical Center","ror":"https://ror.org/02rgrnk13","country_code":"PT","type":"facility","lineage":["https://openalex.org/I4210121181"]},{"id":"https://openalex.org/I4210137384","display_name":"Centre for Health Technology and Services Research","ror":"https://ror.org/0434vme59","country_code":"PT","type":"facility","lineage":["https://openalex.org/I4210137384"]},{"id":"https://openalex.org/I71503853","display_name":"University of Algarve","ror":"https://ror.org/014g34x36","country_code":"PT","type":"education","lineage":["https://openalex.org/I71503853"]}],"countries":["PT"],"is_corresponding":true,"raw_author_name":"Ana-Teresa Maia","raw_affiliation_strings":["Algarve Biomedical Center (ABC), University of Algarve , Faro 8005-139, Portugal","Center for Research in Health Technologies and Information Systems (CINTESIS-UAlg), University of Algarve , Faro 8005-139, Portugal","Faculty of Medicine and Biomedical Sciences (FMCB), University of Algarve , Faro 8005-139, Portugal"],"affiliations":[{"raw_affiliation_string":"Algarve Biomedical Center (ABC), University of Algarve , Faro 8005-139, Portugal","institution_ids":["https://openalex.org/I4210121181","https://openalex.org/I71503853"]},{"raw_affiliation_string":"Center for Research in Health Technologies and Information Systems (CINTESIS-UAlg), University of Algarve , Faro 8005-139, Portugal","institution_ids":["https://openalex.org/I4210137384","https://openalex.org/I71503853"]},{"raw_affiliation_string":"Faculty of Medicine and Biomedical Sciences (FMCB), University of Algarve , Faro 8005-139, Portugal","institution_ids":["https://openalex.org/I71503853"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5035891313"],"corresponding_institution_ids":["https://openalex.org/I4210121181","https://openalex.org/I4210137384","https://openalex.org/I71503853"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":0.1626,"has_fulltext":true,"cited_by_count":4,"citation_normalized_percentile":{"value":0.48963477,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":97},"biblio":{"volume":"38","issue":"1","first_page":"294","last_page":"296"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.9763000011444092,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.9763000011444092,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12026","display_name":"Explainable Artificial Intelligence (XAI)","score":0.9503999948501587,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9460999965667725,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7318483591079712},{"id":"https://openalex.org/keywords/metadata","display_name":"Metadata","score":0.6953548192977905},{"id":"https://openalex.org/keywords/mit-license","display_name":"MIT License","score":0.6228454113006592},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.5296527743339539},{"id":"https://openalex.org/keywords/table","display_name":"Table (database)","score":0.5138795375823975},{"id":"https://openalex.org/keywords/download","display_name":"Download","score":0.501201868057251},{"id":"https://openalex.org/keywords/rest","display_name":"Rest (music)","score":0.44318196177482605},{"id":"https://openalex.org/keywords/license","display_name":"License","score":0.42399269342422485},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.41687315702438354},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.38920846581459045},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.35460352897644043},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.33064910769462585},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.1537456214427948},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.12840020656585693}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7318483591079712},{"id":"https://openalex.org/C93518851","wikidata":"https://www.wikidata.org/wiki/Q180160","display_name":"Metadata","level":2,"score":0.6953548192977905},{"id":"https://openalex.org/C174183944","wikidata":"https://www.wikidata.org/wiki/Q334661","display_name":"MIT License","level":3,"score":0.6228454113006592},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.5296527743339539},{"id":"https://openalex.org/C45235069","wikidata":"https://www.wikidata.org/wiki/Q278425","display_name":"Table (database)","level":2,"score":0.5138795375823975},{"id":"https://openalex.org/C2780154274","wikidata":"https://www.wikidata.org/wiki/Q7126717","display_name":"Download","level":2,"score":0.501201868057251},{"id":"https://openalex.org/C77265313","wikidata":"https://www.wikidata.org/wiki/Q879844","display_name":"Rest (music)","level":2,"score":0.44318196177482605},{"id":"https://openalex.org/C2780560020","wikidata":"https://www.wikidata.org/wiki/Q79719","display_name":"License","level":2,"score":0.42399269342422485},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.41687315702438354},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.38920846581459045},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.35460352897644043},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.33064910769462585},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.1537456214427948},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.12840020656585693},{"id":"https://openalex.org/C164705383","wikidata":"https://www.wikidata.org/wiki/Q10379","display_name":"Cardiology","level":1,"score":0.0},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000071253","descriptor_name":"Metadata","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000071253","descriptor_name":"Metadata","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000071253","descriptor_name":"Metadata","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011642","descriptor_name":"Publications","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011642","descriptor_name":"Publications","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011642","descriptor_name":"Publications","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btab522","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab522","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/38/1/294/41891024/btab522.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:34270693","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/34270693","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:8696104","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8696104","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btab522","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab522","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/38/1/294/41891024/btab522.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1516346500","display_name":null,"funder_award_id":"01-0145","funder_id":"https://openalex.org/F4320334779","funder_display_name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia"},{"id":"https://openalex.org/G1716593420","display_name":null,"funder_award_id":"-FEDER-","funder_id":"https://openalex.org/F4320334779","funder_display_name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia"},{"id":"https://openalex.org/G1763632427","display_name":null,"funder_award_id":"POCI-01-0145","funder_id":"https://openalex.org/F4320334779","funder_display_name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia"},{"id":"https://openalex.org/G2587245514","display_name":null,"funder_award_id":"reference UIDB/4255/2020","funder_id":"https://openalex.org/F4320334779","funder_display_name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia"},{"id":"https://openalex.org/G3268240853","display_name":null,"funder_award_id":"CINTESIS","funder_id":"https://openalex.org/F4320334779","funder_display_name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia"},{"id":"https://openalex.org/G3272457656","display_name":null,"funder_award_id":"UIDB/","funder_id":"https://openalex.org/F4320334779","funder_display_name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia"},{"id":"https://openalex.org/G3417789674","display_name":null,"funder_award_id":"POCI-01-0145-FEDER-022184","funder_id":"https://openalex.org/F4320334779","funder_display_name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia"},{"id":"https://openalex.org/G5224927334","display_name":null,"funder_award_id":"POCI-01-","funder_id":"https://openalex.org/F4320334779","funder_display_name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia"},{"id":"https://openalex.org/G5348594205","display_name":null,"funder_award_id":"FEDER","funder_id":"https://openalex.org/F4320334779","funder_display_name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia"},{"id":"https://openalex.org/G5406805577","display_name":null,"funder_award_id":"UIDB/4255/2020","funder_id":"https://openalex.org/F4320329626","funder_display_name":"Centro de Investiga\u00e7\u00e3o em Tecnologias e Servi\u00e7os de Sa\u00fade"},{"id":"https://openalex.org/G8788367252","display_name":null,"funder_award_id":"UIDB/4255/2020","funder_id":"https://openalex.org/F4320334779","funder_display_name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia"},{"id":"https://openalex.org/G8862270368","display_name":null,"funder_award_id":"POCI-01-0145-FEDER","funder_id":"https://openalex.org/F4320334779","funder_display_name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia"}],"funders":[{"id":"https://openalex.org/F4320329626","display_name":"Centro de Investiga\u00e7\u00e3o em Tecnologias e Servi\u00e7os de Sa\u00fade","ror":"https://ror.org/0434vme59"},{"id":"https://openalex.org/F4320334779","display_name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia","ror":"https://ror.org/00snfqn58"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3182110713.pdf","grobid_xml":"https://content.openalex.org/works/W3182110713.grobid-xml"},"referenced_works_count":9,"referenced_works":["https://openalex.org/W2096142777","https://openalex.org/W2116868464","https://openalex.org/W2770230381","https://openalex.org/W2945924629","https://openalex.org/W2971308142","https://openalex.org/W2980086570","https://openalex.org/W3134184401","https://openalex.org/W4235243453","https://openalex.org/W6762718259"],"related_works":["https://openalex.org/W2036021480","https://openalex.org/W2546377002","https://openalex.org/W4285209474","https://openalex.org/W22571951","https://openalex.org/W2046541848","https://openalex.org/W4384009753","https://openalex.org/W2791776396","https://openalex.org/W4286531993","https://openalex.org/W2964820744","https://openalex.org/W4247858078"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":1}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
