{"id":"https://openalex.org/W3180684391","doi":"https://doi.org/10.1093/bioinformatics/btab513","title":"TempoMAGE: a deep learning framework that exploits the causal dependency between time-series data to predict histone marks in open chromatin regions at time-points with missing ChIP-seq datasets","display_name":"TempoMAGE: a deep learning framework that exploits the causal dependency between time-series data to predict histone marks in open chromatin regions at time-points with missing ChIP-seq datasets","publication_year":2021,"publication_date":"2021-07-09","ids":{"openalex":"https://openalex.org/W3180684391","doi":"https://doi.org/10.1093/bioinformatics/btab513","mag":"3180684391","pmid":"https://pubmed.ncbi.nlm.nih.gov/34255822"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btab513","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab513","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5041181303","display_name":"Mohammad Hallal","orcid":"https://orcid.org/0000-0003-1624-9647"},"institutions":[{"id":"https://openalex.org/I98635879","display_name":"American University of Beirut","ror":"https://ror.org/04pznsd21","country_code":"LB","type":"education","lineage":["https://openalex.org/I98635879"]}],"countries":["LB"],"is_corresponding":false,"raw_author_name":"Mohammad Hallal","raw_affiliation_strings":["Biomedical Engineering Program, American University of Beirut , PO Box 11-0236 Beirut, Lebanon","Department of Biochemistry and Molecular Genetics, Faculty of Medicine, American University of Beirut , PO Box 11-0236 Beirut, Lebanon"],"affiliations":[{"raw_affiliation_string":"Biomedical Engineering Program, American University of Beirut , PO Box 11-0236 Beirut, Lebanon","institution_ids":["https://openalex.org/I98635879"]},{"raw_affiliation_string":"Department of Biochemistry and Molecular Genetics, Faculty of Medicine, American University of Beirut , PO Box 11-0236 Beirut, Lebanon","institution_ids":["https://openalex.org/I98635879"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008382926","display_name":"Mariette Awad","orcid":"https://orcid.org/0000-0002-4815-6894"},"institutions":[{"id":"https://openalex.org/I98635879","display_name":"American University of Beirut","ror":"https://ror.org/04pznsd21","country_code":"LB","type":"education","lineage":["https://openalex.org/I98635879"]}],"countries":["LB"],"is_corresponding":false,"raw_author_name":"Mariette Awad","raw_affiliation_strings":["Department of Electrical and Computer Engineering, American University of Beirut , PO Box 11-0236 Beirut, Lebanon"],"affiliations":[{"raw_affiliation_string":"Department of Electrical and Computer Engineering, American University of Beirut , PO Box 11-0236 Beirut, Lebanon","institution_ids":["https://openalex.org/I98635879"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5039949627","display_name":"Pierre Khoueiry","orcid":"https://orcid.org/0000-0001-7643-3310"},"institutions":[{"id":"https://openalex.org/I98635879","display_name":"American University of Beirut","ror":"https://ror.org/04pznsd21","country_code":"LB","type":"education","lineage":["https://openalex.org/I98635879"]}],"countries":["LB"],"is_corresponding":true,"raw_author_name":"Pierre Khoueiry","raw_affiliation_strings":["Department of Biochemistry and Molecular Genetics, Faculty of Medicine, American University of Beirut , PO Box 11-0236 Beirut, Lebanon","Pillar Genomics Institute, Faculty of Medicine, American University of Beirut , PO Box 11-0236 Beirut, Lebanon"],"affiliations":[{"raw_affiliation_string":"Department of Biochemistry and Molecular Genetics, Faculty of Medicine, American University of Beirut , PO Box 11-0236 Beirut, Lebanon","institution_ids":["https://openalex.org/I98635879"]},{"raw_affiliation_string":"Pillar Genomics Institute, Faculty of Medicine, American University of Beirut , PO Box 11-0236 Beirut, Lebanon","institution_ids":["https://openalex.org/I98635879"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5039949627"],"corresponding_institution_ids":["https://openalex.org/I98635879"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.1626,"has_fulltext":false,"cited_by_count":3,"citation_normalized_percentile":{"value":0.48926381,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":95},"biblio":{"volume":"37","issue":"23","first_page":"4336","last_page":"4342"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10604","display_name":"RNA Research and Splicing","score":0.9979000091552734,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10269","display_name":"Epigenetics and DNA Methylation","score":0.9976999759674072,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7402502298355103},{"id":"https://openalex.org/keywords/exploit","display_name":"Exploit","score":0.6401770710945129},{"id":"https://openalex.org/keywords/chromatin","display_name":"Chromatin","score":0.5977787375450134},{"id":"https://openalex.org/keywords/dependency","display_name":"Dependency (UML)","score":0.5108044147491455},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5046101808547974},{"id":"https://openalex.org/keywords/histone","display_name":"Histone","score":0.5031341910362244},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.48929736018180847},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.4598451852798462},{"id":"https://openalex.org/keywords/deep-learning","display_name":"Deep learning","score":0.4280027151107788},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4251467287540436},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.36509764194488525},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.23625457286834717},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.13146233558654785},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.12930217385292053}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7402502298355103},{"id":"https://openalex.org/C165696696","wikidata":"https://www.wikidata.org/wiki/Q11287","display_name":"Exploit","level":2,"score":0.6401770710945129},{"id":"https://openalex.org/C83640560","wikidata":"https://www.wikidata.org/wiki/Q180951","display_name":"Chromatin","level":3,"score":0.5977787375450134},{"id":"https://openalex.org/C19768560","wikidata":"https://www.wikidata.org/wiki/Q320727","display_name":"Dependency (UML)","level":2,"score":0.5108044147491455},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5046101808547974},{"id":"https://openalex.org/C64927066","wikidata":"https://www.wikidata.org/wiki/Q36293","display_name":"Histone","level":3,"score":0.5031341910362244},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.48929736018180847},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.4598451852798462},{"id":"https://openalex.org/C108583219","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep learning","level":2,"score":0.4280027151107788},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4251467287540436},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.36509764194488525},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.23625457286834717},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.13146233558654785},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.12930217385292053},{"id":"https://openalex.org/C38652104","wikidata":"https://www.wikidata.org/wiki/Q3510521","display_name":"Computer security","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000081204","descriptor_name":"Chromatin Immunoprecipitation Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000081204","descriptor_name":"Chromatin Immunoprecipitation Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000081204","descriptor_name":"Chromatin Immunoprecipitation Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002843","descriptor_name":"Chromatin","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D002843","descriptor_name":"Chromatin","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D002843","descriptor_name":"Chromatin","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012045","descriptor_name":"Regulatory Sequences, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012045","descriptor_name":"Regulatory Sequences, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012045","descriptor_name":"Regulatory Sequences, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D042421","descriptor_name":"Histone Code","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D042421","descriptor_name":"Histone Code","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D042421","descriptor_name":"Histone Code","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btab513","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab513","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:34255822","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/34255822","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G6182537982","display_name":null,"funder_award_id":"103509","funder_id":"https://openalex.org/F4320335042","funder_display_name":"National Council for Scientific Research"},{"id":"https://openalex.org/G6324185565","display_name":null,"funder_award_id":"103487","funder_id":"https://openalex.org/F4320309999","funder_display_name":"American University of Beirut"},{"id":"https://openalex.org/G7193792136","display_name":null,"funder_award_id":"320154","funder_id":"https://openalex.org/F4320309999","funder_display_name":"American University of Beirut"}],"funders":[{"id":"https://openalex.org/F4320309999","display_name":"American University of Beirut","ror":"https://ror.org/04pznsd21"},{"id":"https://openalex.org/F4320335042","display_name":"National Council for Scientific Research","ror":null}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":31,"referenced_works":["https://openalex.org/W1559787972","https://openalex.org/W1963981640","https://openalex.org/W1976526581","https://openalex.org/W1977855308","https://openalex.org/W2033201031","https://openalex.org/W2059216629","https://openalex.org/W2091203329","https://openalex.org/W2103777723","https://openalex.org/W2108675631","https://openalex.org/W2135900825","https://openalex.org/W2198606573","https://openalex.org/W2248907500","https://openalex.org/W2253955501","https://openalex.org/W2336509392","https://openalex.org/W2345512687","https://openalex.org/W2502203653","https://openalex.org/W2591130492","https://openalex.org/W2608702473","https://openalex.org/W2757216682","https://openalex.org/W2768013244","https://openalex.org/W2784117710","https://openalex.org/W2795993365","https://openalex.org/W2886356286","https://openalex.org/W2891494568","https://openalex.org/W2899539352","https://openalex.org/W2947608130","https://openalex.org/W3039824126","https://openalex.org/W3045864178","https://openalex.org/W3045946041","https://openalex.org/W3093858607","https://openalex.org/W3133455019"],"related_works":["https://openalex.org/W17155033","https://openalex.org/W3207760230","https://openalex.org/W1496222301","https://openalex.org/W1590307681","https://openalex.org/W4312814274","https://openalex.org/W4285370786","https://openalex.org/W2250721602","https://openalex.org/W98379584","https://openalex.org/W2413824894","https://openalex.org/W2055566470"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":1}],"updated_date":"2026-04-09T08:11:56.329763","created_date":"2025-10-10T00:00:00"}
