{"id":"https://openalex.org/W3174753721","doi":"https://doi.org/10.1093/bioinformatics/btab464","title":"Node similarity-based graph convolution for link prediction in biological networks","display_name":"Node similarity-based graph convolution for link prediction in biological networks","publication_year":2021,"publication_date":"2021-06-17","ids":{"openalex":"https://openalex.org/W3174753721","doi":"https://doi.org/10.1093/bioinformatics/btab464","mag":"3174753721","pmid":"https://pubmed.ncbi.nlm.nih.gov/34152393"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btab464","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab464","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8652026","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5087032049","display_name":"Mustafa Co\u015fkun","orcid":"https://orcid.org/0000-0003-4805-1416"},"institutions":[{"id":"https://openalex.org/I160534799","display_name":"Hakkari University","ror":"https://ror.org/00nddb461","country_code":"TR","type":"education","lineage":["https://openalex.org/I160534799"]},{"id":"https://openalex.org/I95293974","display_name":"Abdullah G\u00fcl University","ror":"https://ror.org/00zdyy359","country_code":"TR","type":"education","lineage":["https://openalex.org/I95293974"]}],"countries":["TR"],"is_corresponding":true,"raw_author_name":"Mustafa Co\u015fkun","raw_affiliation_strings":["Department of Computer Engineering, Abdullah G\u00fcl University , Kayseri, Turkey","Hakkari University , Kayseri 38080, Turkey"],"affiliations":[{"raw_affiliation_string":"Department of Computer Engineering, Abdullah G\u00fcl University , Kayseri, Turkey","institution_ids":["https://openalex.org/I95293974"]},{"raw_affiliation_string":"Hakkari University , Kayseri 38080, Turkey","institution_ids":["https://openalex.org/I160534799"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5035558591","display_name":"Mehmet Koyut\u00fcrk","orcid":"https://orcid.org/0000-0002-3434-5512"},"institutions":[{"id":"https://openalex.org/I58956616","display_name":"Case Western Reserve University","ror":"https://ror.org/051fd9666","country_code":"US","type":"education","lineage":["https://openalex.org/I58956616"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mehmet Koyut\u00fcrk","raw_affiliation_strings":["Center for Proteomics and Bioinformatics, Case Western Reserve University , Cleveland, OH 44106, USA","Department of Computer and Data Sciences, Case Western Reserve University , Cleveland, OH 44106, USA"],"affiliations":[{"raw_affiliation_string":"Center for Proteomics and Bioinformatics, Case Western Reserve University , Cleveland, OH 44106, USA","institution_ids":["https://openalex.org/I58956616"]},{"raw_affiliation_string":"Department of Computer and Data Sciences, Case Western Reserve University , Cleveland, OH 44106, USA","institution_ids":["https://openalex.org/I58956616"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5087032049"],"corresponding_institution_ids":["https://openalex.org/I160534799","https://openalex.org/I95293974"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":4.0669,"has_fulltext":false,"cited_by_count":59,"citation_normalized_percentile":{"value":0.95328559,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":96,"max":100},"biblio":{"volume":"37","issue":"23","first_page":"4501","last_page":"4508"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9983999729156494,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10064","display_name":"Complex Network Analysis Techniques","score":0.9934999942779541,"subfield":{"id":"https://openalex.org/subfields/3109","display_name":"Statistical and Nonlinear Physics"},"field":{"id":"https://openalex.org/fields/31","display_name":"Physics and Astronomy"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/link","display_name":"Link (geometry)","score":0.7504764795303345},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7272195816040039},{"id":"https://openalex.org/keywords/convolution","display_name":"Convolution (computer science)","score":0.6435150504112244},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.6358891129493713},{"id":"https://openalex.org/keywords/node","display_name":"Node (physics)","score":0.6242651343345642},{"id":"https://openalex.org/keywords/similarity","display_name":"Similarity (geometry)","score":0.6019882559776306},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.4465303122997284},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.2992013692855835},{"id":"https://openalex.org/keywords/computer-network","display_name":"Computer network","score":0.21247607469558716},{"id":"https://openalex.org/keywords/artificial-neural-network","display_name":"Artificial neural network","score":0.07434773445129395}],"concepts":[{"id":"https://openalex.org/C2778753846","wikidata":"https://www.wikidata.org/wiki/Q6554239","display_name":"Link (geometry)","level":2,"score":0.7504764795303345},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7272195816040039},{"id":"https://openalex.org/C45347329","wikidata":"https://www.wikidata.org/wiki/Q5166604","display_name":"Convolution (computer science)","level":3,"score":0.6435150504112244},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.6358891129493713},{"id":"https://openalex.org/C62611344","wikidata":"https://www.wikidata.org/wiki/Q1062658","display_name":"Node (physics)","level":2,"score":0.6242651343345642},{"id":"https://openalex.org/C103278499","wikidata":"https://www.wikidata.org/wiki/Q254465","display_name":"Similarity (geometry)","level":3,"score":0.6019882559776306},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.4465303122997284},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.2992013692855835},{"id":"https://openalex.org/C31258907","wikidata":"https://www.wikidata.org/wiki/Q1301371","display_name":"Computer network","level":1,"score":0.21247607469558716},{"id":"https://openalex.org/C50644808","wikidata":"https://www.wikidata.org/wiki/Q192776","display_name":"Artificial neural network","level":2,"score":0.07434773445129395},{"id":"https://openalex.org/C66938386","wikidata":"https://www.wikidata.org/wiki/Q633538","display_name":"Structural engineering","level":1,"score":0.0},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.0},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D007990","descriptor_name":"Libraries","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D007990","descriptor_name":"Libraries","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D007990","descriptor_name":"Libraries","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015723","descriptor_name":"Gene Library","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015723","descriptor_name":"Gene Library","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015723","descriptor_name":"Gene Library","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btab464","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab464","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:34152393","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/34152393","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:8652026","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8652026","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"pmh:oai:pubmedcentral.nih.gov:8652026","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8652026","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1077516249","display_name":null,"funder_award_id":"U01-CA198941","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337351","display_name":"National Cancer Institute","ror":"https://ror.org/040gcmg81"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":35,"referenced_works":["https://openalex.org/W1583837637","https://openalex.org/W1979104937","https://openalex.org/W2007444087","https://openalex.org/W2074549773","https://openalex.org/W2096173332","https://openalex.org/W2098427571","https://openalex.org/W2105924489","https://openalex.org/W2113072832","https://openalex.org/W2118169662","https://openalex.org/W2118607021","https://openalex.org/W2122925692","https://openalex.org/W2154454189","https://openalex.org/W2159583324","https://openalex.org/W2170241526","https://openalex.org/W2275703773","https://openalex.org/W2343928016","https://openalex.org/W2556519015","https://openalex.org/W2569335714","https://openalex.org/W2579434750","https://openalex.org/W2624021832","https://openalex.org/W2624968853","https://openalex.org/W2767891136","https://openalex.org/W2900758217","https://openalex.org/W2916047525","https://openalex.org/W2951531839","https://openalex.org/W2962756421","https://openalex.org/W2964015378","https://openalex.org/W2977707586","https://openalex.org/W3043771525","https://openalex.org/W4232932184","https://openalex.org/W4293651439","https://openalex.org/W4322614756","https://openalex.org/W6726873649","https://openalex.org/W6730084236","https://openalex.org/W6744557953"],"related_works":["https://openalex.org/W1518185400","https://openalex.org/W3200586296","https://openalex.org/W4230332972","https://openalex.org/W1998033311","https://openalex.org/W4247322236","https://openalex.org/W1762272577","https://openalex.org/W4206960768","https://openalex.org/W1787322086","https://openalex.org/W2892165056","https://openalex.org/W2098964748"],"abstract_inverted_index":{"Our":[0],"method,":[1],"SiGraC,":[2],"is":[3,10],"implemented":[4],"as":[5],"a":[6],"Python":[7],"library":[8],"and":[9],"freely":[11],"available":[12],"at":[13],"https://github.com/mustafaCoskunAgu/SiGraC.":[14]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":8},{"year":2024,"cited_by_count":13},{"year":2023,"cited_by_count":19},{"year":2022,"cited_by_count":14},{"year":2021,"cited_by_count":4}],"updated_date":"2026-04-21T08:09:41.155169","created_date":"2025-10-10T00:00:00"}
