{"id":"https://openalex.org/W3163856372","doi":"https://doi.org/10.1093/bioinformatics/btab393","title":"ExTraMapper: exon- and transcript-level mappings for orthologous gene pairs","display_name":"ExTraMapper: exon- and transcript-level mappings for orthologous gene pairs","publication_year":2021,"publication_date":"2021-05-19","ids":{"openalex":"https://openalex.org/W3163856372","doi":"https://doi.org/10.1093/bioinformatics/btab393","mag":"3163856372","pmid":"https://pubmed.ncbi.nlm.nih.gov/34014317"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btab393","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab393","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8545320","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5053398622","display_name":"Abhijit Chakraborty","orcid":"https://orcid.org/0000-0002-1500-3699"},"institutions":[{"id":"https://openalex.org/I1311191458","display_name":"La Jolla Institute for Immunology","ror":"https://ror.org/05vkpd318","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1311191458"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Abhijit Chakraborty","raw_affiliation_strings":["Centers for Cancer Immunotherapy and Autoimmunity, La Jolla Institute for Immunology , La Jolla, CA 92037, USA"],"affiliations":[{"raw_affiliation_string":"Centers for Cancer Immunotherapy and Autoimmunity, La Jolla Institute for Immunology , La Jolla, CA 92037, USA","institution_ids":["https://openalex.org/I1311191458"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036380790","display_name":"Ferhat Ay","orcid":"https://orcid.org/0000-0002-0708-6914"},"institutions":[{"id":"https://openalex.org/I1311191458","display_name":"La Jolla Institute for Immunology","ror":"https://ror.org/05vkpd318","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1311191458"]},{"id":"https://openalex.org/I36258959","display_name":"University of California San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Ferhat Ay","raw_affiliation_strings":["Centers for Cancer Immunotherapy and Autoimmunity, La Jolla Institute for Immunology , La Jolla, CA 92037, USA","Department of Pediatrics, UC San Diego\u2014School of Medicine , La Jolla, CA 92093, USA"],"affiliations":[{"raw_affiliation_string":"Centers for Cancer Immunotherapy and Autoimmunity, La Jolla Institute for Immunology , La Jolla, CA 92037, USA","institution_ids":["https://openalex.org/I1311191458"]},{"raw_affiliation_string":"Department of Pediatrics, UC San Diego\u2014School of Medicine , La Jolla, CA 92093, USA","institution_ids":["https://openalex.org/I36258959"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5017429478","display_name":"Ramana V. Davuluri","orcid":"https://orcid.org/0000-0002-7053-1064"},"institutions":[{"id":"https://openalex.org/I59553526","display_name":"Stony Brook University","ror":"https://ror.org/05qghxh33","country_code":"US","type":"education","lineage":["https://openalex.org/I59553526"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ramana V Davuluri","raw_affiliation_strings":["Department of Biomedical Informatics, Stony Brook University , Stony Brook, NY 11794, USA"],"affiliations":[{"raw_affiliation_string":"Department of Biomedical Informatics, Stony Brook University , Stony Brook, NY 11794, USA","institution_ids":["https://openalex.org/I59553526"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5036380790"],"corresponding_institution_ids":["https://openalex.org/I1311191458","https://openalex.org/I36258959"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.3254,"has_fulltext":false,"cited_by_count":4,"citation_normalized_percentile":{"value":0.55763382,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":96},"biblio":{"volume":"37","issue":"20","first_page":"3412","last_page":"3420"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10604","display_name":"RNA Research and Splicing","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9979000091552734,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/exon","display_name":"Exon","score":0.7598056197166443},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.6611864566802979},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.6430166959762573},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4751795828342438},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.45744654536247253},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.37059634923934937}],"concepts":[{"id":"https://openalex.org/C36823959","wikidata":"https://www.wikidata.org/wiki/Q373027","display_name":"Exon","level":3,"score":0.7598056197166443},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.6611864566802979},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.6430166959762573},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4751795828342438},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.45744654536247253},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.37059634923934937}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btab393","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab393","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:34014317","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/34014317","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:8545320","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8545320","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"pmh:oai:pubmedcentral.nih.gov:8545320","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8545320","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"},"sustainable_development_goals":[{"score":0.5899999737739563,"display_name":"Life in Land","id":"https://metadata.un.org/sdg/15"}],"awards":[{"id":"https://openalex.org/G6240949075","display_name":null,"funder_award_id":"R35-GM128938","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G6360964143","display_name":null,"funder_award_id":"R01-LM011297","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":43,"referenced_works":["https://openalex.org/W102030471","https://openalex.org/W1045423629","https://openalex.org/W1814420991","https://openalex.org/W1974940638","https://openalex.org/W1981509058","https://openalex.org/W1984247920","https://openalex.org/W1991543373","https://openalex.org/W1991909246","https://openalex.org/W2003605043","https://openalex.org/W2005508652","https://openalex.org/W2007228036","https://openalex.org/W2028279880","https://openalex.org/W2030880783","https://openalex.org/W2064384407","https://openalex.org/W2066695328","https://openalex.org/W2086982662","https://openalex.org/W2094074349","https://openalex.org/W2097065948","https://openalex.org/W2098371880","https://openalex.org/W2102278945","https://openalex.org/W2112132489","https://openalex.org/W2114104545","https://openalex.org/W2114703458","https://openalex.org/W2120599553","https://openalex.org/W2122673063","https://openalex.org/W2136374834","https://openalex.org/W2138207763","https://openalex.org/W2139480055","https://openalex.org/W2145191876","https://openalex.org/W2152239989","https://openalex.org/W2152813589","https://openalex.org/W2155538826","https://openalex.org/W2160420391","https://openalex.org/W2163188200","https://openalex.org/W2163255492","https://openalex.org/W2166444569","https://openalex.org/W2169353806","https://openalex.org/W2176747243","https://openalex.org/W2337576141","https://openalex.org/W2567608080","https://openalex.org/W2774232463","https://openalex.org/W4210767115","https://openalex.org/W4252232449"],"related_works":["https://openalex.org/W2082860237","https://openalex.org/W2119695867","https://openalex.org/W2130076355","https://openalex.org/W1990804418","https://openalex.org/W1993764875","https://openalex.org/W2046158694","https://openalex.org/W2788277189","https://openalex.org/W2013243191","https://openalex.org/W2117258802","https://openalex.org/W2034625591"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":2}],"updated_date":"2026-04-21T08:09:41.155169","created_date":"2025-10-10T00:00:00"}
