{"id":"https://openalex.org/W3110737921","doi":"https://doi.org/10.1093/bioinformatics/btab351","title":"KwARG: parsimonious reconstruction of ancestral recombination graphs with recurrent mutation","display_name":"KwARG: parsimonious reconstruction of ancestral recombination graphs with recurrent mutation","publication_year":2021,"publication_date":"2021-05-07","ids":{"openalex":"https://openalex.org/W3110737921","doi":"https://doi.org/10.1093/bioinformatics/btab351","mag":"3110737921","pmid":"https://pubmed.ncbi.nlm.nih.gov/33970217"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btab351","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab351","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/37/19/3277/40556624/btab351.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["arxiv","crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/37/19/3277/40556624/btab351.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5072110299","display_name":"Anastasia Ignatieva","orcid":"https://orcid.org/0000-0001-6402-9396"},"institutions":[{"id":"https://openalex.org/I39555362","display_name":"University of Warwick","ror":"https://ror.org/01a77tt86","country_code":"GB","type":"education","lineage":["https://openalex.org/I39555362"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Anastasia Ignatieva","raw_affiliation_strings":["Department of Statistics, University of Warwick , Coventry CV4 7AL, UK"],"affiliations":[{"raw_affiliation_string":"Department of Statistics, University of Warwick , Coventry CV4 7AL, UK","institution_ids":["https://openalex.org/I39555362"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5084872691","display_name":"Rune B. Lyngs\u00f8","orcid":null},"institutions":[{"id":"https://openalex.org/I40120149","display_name":"University of Oxford","ror":"https://ror.org/052gg0110","country_code":"GB","type":"education","lineage":["https://openalex.org/I40120149"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Rune B Lyngs\u00f8","raw_affiliation_strings":["Department of Statistics, University of Oxford , Oxford OX1 3LB, UK"],"affiliations":[{"raw_affiliation_string":"Department of Statistics, University of Oxford , Oxford OX1 3LB, UK","institution_ids":["https://openalex.org/I40120149"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5006647251","display_name":"Paul A. Jenkins","orcid":"https://orcid.org/0000-0001-7603-4205"},"institutions":[{"id":"https://openalex.org/I125680101","display_name":"Turing Institute","ror":"https://ror.org/02x2mw849","country_code":"GB","type":"facility","lineage":["https://openalex.org/I125680101"]},{"id":"https://openalex.org/I2800016483","display_name":"British Library","ror":"https://ror.org/05dhe8b71","country_code":"GB","type":"archive","lineage":["https://openalex.org/I2800016483"]},{"id":"https://openalex.org/I39555362","display_name":"University of Warwick","ror":"https://ror.org/01a77tt86","country_code":"GB","type":"education","lineage":["https://openalex.org/I39555362"]},{"id":"https://openalex.org/I4210128584","display_name":"The Alan Turing Institute","ror":"https://ror.org/035dkdb55","country_code":"GB","type":"facility","lineage":["https://openalex.org/I4210128584"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Paul A Jenkins","raw_affiliation_strings":["Department of Computer Science, University of Warwick , Coventry CV4 7AL, UK","Department of Statistics, University of Warwick , Coventry CV4 7AL, UK","The Alan Turing Institute, British Library , London NW1 2DB, UK"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Warwick , Coventry CV4 7AL, UK","institution_ids":["https://openalex.org/I39555362"]},{"raw_affiliation_string":"Department of Statistics, University of Warwick , Coventry CV4 7AL, UK","institution_ids":["https://openalex.org/I39555362"]},{"raw_affiliation_string":"The Alan Turing Institute, British Library , London NW1 2DB, UK","institution_ids":["https://openalex.org/I125680101","https://openalex.org/I4210128584","https://openalex.org/I2800016483"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5079496228","display_name":"Jotun Hein","orcid":"https://orcid.org/0000-0002-8100-0824"},"institutions":[{"id":"https://openalex.org/I125680101","display_name":"Turing Institute","ror":"https://ror.org/02x2mw849","country_code":"GB","type":"facility","lineage":["https://openalex.org/I125680101"]},{"id":"https://openalex.org/I2800016483","display_name":"British Library","ror":"https://ror.org/05dhe8b71","country_code":"GB","type":"archive","lineage":["https://openalex.org/I2800016483"]},{"id":"https://openalex.org/I40120149","display_name":"University of Oxford","ror":"https://ror.org/052gg0110","country_code":"GB","type":"education","lineage":["https://openalex.org/I40120149"]},{"id":"https://openalex.org/I4210128584","display_name":"The Alan Turing Institute","ror":"https://ror.org/035dkdb55","country_code":"GB","type":"facility","lineage":["https://openalex.org/I4210128584"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Jotun Hein","raw_affiliation_strings":["Department of Statistics, University of Oxford , Oxford OX1 3LB, UK","The Alan Turing Institute, British Library , London NW1 2DB, UK"],"affiliations":[{"raw_affiliation_string":"Department of Statistics, University of Oxford , Oxford OX1 3LB, UK","institution_ids":["https://openalex.org/I40120149"]},{"raw_affiliation_string":"The Alan Turing Institute, British Library , London NW1 2DB, UK","institution_ids":["https://openalex.org/I125680101","https://openalex.org/I4210128584","https://openalex.org/I2800016483"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5072110299"],"corresponding_institution_ids":["https://openalex.org/I39555362"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":4.328,"has_fulltext":true,"cited_by_count":31,"citation_normalized_percentile":{"value":0.94638698,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":99},"biblio":{"volume":"37","issue":"19","first_page":"3277","last_page":"3284"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.9955999851226807,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.9955999851226807,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10949","display_name":"Genetic Neurodegenerative Diseases","score":0.9940000176429749,"subfield":{"id":"https://openalex.org/subfields/2804","display_name":"Cellular and Molecular Neuroscience"},"field":{"id":"https://openalex.org/fields/28","display_name":"Neuroscience"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9919000267982483,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/recombination","display_name":"Recombination","score":0.6814370155334473},{"id":"https://openalex.org/keywords/mutation","display_name":"Mutation","score":0.6570842862129211},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.48435553908348083},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.4263787567615509},{"id":"https://openalex.org/keywords/evolutionary-biology","display_name":"Evolutionary biology","score":0.41373690962791443},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.406166672706604},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.402004599571228},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.10074400901794434}],"concepts":[{"id":"https://openalex.org/C156695909","wikidata":"https://www.wikidata.org/wiki/Q3373825","display_name":"Recombination","level":3,"score":0.6814370155334473},{"id":"https://openalex.org/C501734568","wikidata":"https://www.wikidata.org/wiki/Q42918","display_name":"Mutation","level":3,"score":0.6570842862129211},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.48435553908348083},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.4263787567615509},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.41373690962791443},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.406166672706604},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.402004599571228},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.10074400901794434}],"mesh":[],"locations_count":5,"locations":[{"id":"doi:10.1093/bioinformatics/btab351","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab351","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/37/19/3277/40556624/btab351.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:33970217","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/33970217","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:wrap.warwick.ac.uk:152770","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4306400665","display_name":"Warwick Research Archive Portal (University of Warwick)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I39555362","host_organization_name":"University of Warwick","host_organization_lineage":["https://openalex.org/I39555362"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"","raw_type":"Journal Article"},{"id":"pmh:oai:arXiv.org:2012.09562","is_oa":true,"landing_page_url":"http://arxiv.org/abs/2012.09562","pdf_url":"https://arxiv.org/pdf/2012.09562","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},{"id":"pmh:oai:pubmedcentral.nih.gov:8504621","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8504621","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btab351","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab351","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/37/19/3277/40556624/btab351.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1633672591","display_name":null,"funder_award_id":"N510129","funder_id":"https://openalex.org/F4320334627","funder_display_name":"Engineering and Physical Sciences Research Council"},{"id":"https://openalex.org/G1934935867","display_name":null,"funder_award_id":"Engineering and Physical Sciences R","funder_id":"https://openalex.org/F4320334627","funder_display_name":"Engineering and Physical Sciences Research Council"},{"id":"https://openalex.org/G3474858958","display_name":"EPSRC and MRC Centre for Doctoral Training in Next Generation Statistical Science: The Oxford-Warwick Statistics Programme.","funder_award_id":"EP/L016710/1","funder_id":"https://openalex.org/F4320334627","funder_display_name":"Engineering and Physical Sciences Research Council"},{"id":"https://openalex.org/G3855435662","display_name":null,"funder_award_id":"N510129","funder_id":"https://openalex.org/F4320313467","funder_display_name":"Alan Turing Institute"},{"id":"https://openalex.org/G4072067573","display_name":null,"funder_award_id":"EP/N510129/1","funder_id":"https://openalex.org/F4320313467","funder_display_name":"Alan Turing Institute"},{"id":"https://openalex.org/G444630160","display_name":null,"funder_award_id":"EP/N510129/","funder_id":"https://openalex.org/F4320334627","funder_display_name":"Engineering and Physical Sciences Research Council"},{"id":"https://openalex.org/G4500485203","display_name":"The Alan Turing Institute","funder_award_id":"EP/N510129/1","funder_id":"https://openalex.org/F4320334627","funder_display_name":"Engineering and Physical Sciences Research Council"},{"id":"https://openalex.org/G5471147342","display_name":null,"funder_award_id":"EP/L016710/1","funder_id":"https://openalex.org/F4320334626","funder_display_name":"Medical Research Council"},{"id":"https://openalex.org/G6244725262","display_name":null,"funder_award_id":"Centre for Doctoral Training","funder_id":"https://openalex.org/F4320334627","funder_display_name":"Engineering and Physical Sciences Research Council"},{"id":"https://openalex.org/G6653872853","display_name":null,"funder_award_id":"EP/L016","funder_id":"https://openalex.org/F4320334627","funder_display_name":"Engineering and Physical Sciences Research Council"},{"id":"https://openalex.org/G8597009950","display_name":null,"funder_award_id":"EP/N510129/1","funder_id":"https://openalex.org/F4320334627","funder_display_name":"Engineering and Physical Sciences Research Council"},{"id":"https://openalex.org/G8795210754","display_name":null,"funder_award_id":"EP/N510129/1","funder_id":"https://openalex.org/F4320334626","funder_display_name":"Medical Research Council"}],"funders":[{"id":"https://openalex.org/F4320313467","display_name":"Alan Turing Institute","ror":"https://ror.org/035dkdb55"},{"id":"https://openalex.org/F4320334626","display_name":"Medical Research Council","ror":"https://ror.org/03x94j517"},{"id":"https://openalex.org/F4320334627","display_name":"Engineering and Physical Sciences Research Council","ror":"https://ror.org/0439y7842"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3110737921.pdf","grobid_xml":"https://content.openalex.org/works/W3110737921.grobid-xml"},"referenced_works_count":45,"referenced_works":["https://openalex.org/W241117969","https://openalex.org/W1503883746","https://openalex.org/W1533415092","https://openalex.org/W1580819302","https://openalex.org/W1830906757","https://openalex.org/W1962960380","https://openalex.org/W1964853169","https://openalex.org/W1965584649","https://openalex.org/W1969483458","https://openalex.org/W1986146966","https://openalex.org/W1994030486","https://openalex.org/W2033455461","https://openalex.org/W2049931279","https://openalex.org/W2052471587","https://openalex.org/W2054547415","https://openalex.org/W2055862922","https://openalex.org/W2060425093","https://openalex.org/W2072362336","https://openalex.org/W2083213362","https://openalex.org/W2089086992","https://openalex.org/W2095886196","https://openalex.org/W2097276024","https://openalex.org/W2097376441","https://openalex.org/W2116652744","https://openalex.org/W2125359798","https://openalex.org/W2131203559","https://openalex.org/W2137706757","https://openalex.org/W2144141060","https://openalex.org/W2149220842","https://openalex.org/W2153149273","https://openalex.org/W2155645165","https://openalex.org/W2298337693","https://openalex.org/W2472378828","https://openalex.org/W2568245992","https://openalex.org/W2942676143","https://openalex.org/W2951641704","https://openalex.org/W2953135877","https://openalex.org/W2970459958","https://openalex.org/W2971662497","https://openalex.org/W3124319342","https://openalex.org/W3126740943","https://openalex.org/W3217097258","https://openalex.org/W4210735121","https://openalex.org/W4388212639","https://openalex.org/W4388322114"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2001833591","https://openalex.org/W1993689095","https://openalex.org/W2057407197","https://openalex.org/W2214623229","https://openalex.org/W2018099734","https://openalex.org/W1984088569","https://openalex.org/W2146849562","https://openalex.org/W2028961943","https://openalex.org/W2012422256"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2025,"cited_by_count":6},{"year":2024,"cited_by_count":10},{"year":2023,"cited_by_count":7},{"year":2022,"cited_by_count":6},{"year":2021,"cited_by_count":2}],"updated_date":"2026-04-21T08:09:41.155169","created_date":"2025-10-10T00:00:00"}
