{"id":"https://openalex.org/W3182145057","doi":"https://doi.org/10.1093/bioinformatics/btab285","title":"PathCNN: interpretable convolutional neural networks for survival prediction and pathway analysis applied to glioblastoma","display_name":"PathCNN: interpretable convolutional neural networks for survival prediction and pathway analysis applied to glioblastoma","publication_year":2021,"publication_date":"2021-04-24","ids":{"openalex":"https://openalex.org/W3182145057","doi":"https://doi.org/10.1093/bioinformatics/btab285","mag":"3182145057","pmid":"https://pubmed.ncbi.nlm.nih.gov/34252964"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btab285","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab285","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/37/Supplement_1/i443/39620386/btab285.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/37/Supplement_1/i443/39620386/btab285.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5078855608","display_name":"Jung Hun Oh","orcid":"https://orcid.org/0000-0001-8791-2755"},"institutions":[{"id":"https://openalex.org/I1334819555","display_name":"Memorial Sloan Kettering Cancer Center","ror":"https://ror.org/02yrq0923","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1334819555"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Jung Hun Oh","raw_affiliation_strings":["Department of Medical Physics, Memorial Sloan Kettering Cancer Center , New York, NY 10065, USA"],"affiliations":[{"raw_affiliation_string":"Department of Medical Physics, Memorial Sloan Kettering Cancer Center , New York, NY 10065, USA","institution_ids":["https://openalex.org/I1334819555"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083187460","display_name":"Wookjin Choi","orcid":"https://orcid.org/0000-0001-8038-5876"},"institutions":[{"id":"https://openalex.org/I11786554","display_name":"Virginia State University","ror":"https://ror.org/04esvpn06","country_code":"US","type":"education","lineage":["https://openalex.org/I11786554"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Wookjin Choi","raw_affiliation_strings":["Department of Computer Science, Virginia State University , Petersburg, VA 23806, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Virginia State University , Petersburg, VA 23806, USA","institution_ids":["https://openalex.org/I11786554"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5049891449","display_name":"Euiseong Ko","orcid":"https://orcid.org/0000-0002-8522-5334"},"institutions":[{"id":"https://openalex.org/I133999245","display_name":"University of Nevada, Las Vegas","ror":"https://ror.org/0406gha72","country_code":"US","type":"education","lineage":["https://openalex.org/I133999245"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Euiseong Ko","raw_affiliation_strings":["Department of Computer Science, University of Nevada , Las Vegas, NV 89154, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Nevada , Las Vegas, NV 89154, USA","institution_ids":["https://openalex.org/I133999245"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058010272","display_name":"Mingon Kang","orcid":"https://orcid.org/0000-0002-9565-9523"},"institutions":[{"id":"https://openalex.org/I133999245","display_name":"University of Nevada, Las Vegas","ror":"https://ror.org/0406gha72","country_code":"US","type":"education","lineage":["https://openalex.org/I133999245"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Mingon Kang","raw_affiliation_strings":["Department of Computer Science, University of Nevada , Las Vegas, NV 89154, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Nevada , Las Vegas, NV 89154, USA","institution_ids":["https://openalex.org/I133999245"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012935165","display_name":"Allen Tannenbaum","orcid":"https://orcid.org/0000-0002-0567-5256"},"institutions":[{"id":"https://openalex.org/I4210131439","display_name":"Applied Mathematics (United States)","ror":"https://ror.org/03seew607","country_code":"US","type":"company","lineage":["https://openalex.org/I4210131439"]},{"id":"https://openalex.org/I59553526","display_name":"Stony Brook University","ror":"https://ror.org/05qghxh33","country_code":"US","type":"education","lineage":["https://openalex.org/I59553526"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Allen Tannenbaum","raw_affiliation_strings":["Departments of Computer Science and Applied Mathematics & Statistics, Stony Brook University , New York, NY 11794, USA"],"affiliations":[{"raw_affiliation_string":"Departments of Computer Science and Applied Mathematics & Statistics, Stony Brook University , New York, NY 11794, USA","institution_ids":["https://openalex.org/I59553526","https://openalex.org/I4210131439"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5026159944","display_name":"Joseph O. Deasy","orcid":"https://orcid.org/0000-0002-9437-266X"},"institutions":[{"id":"https://openalex.org/I1334819555","display_name":"Memorial Sloan Kettering Cancer Center","ror":"https://ror.org/02yrq0923","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1334819555"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Joseph O Deasy","raw_affiliation_strings":["Department of Medical Physics, Memorial Sloan Kettering Cancer Center , New York, NY 10065, USA"],"affiliations":[{"raw_affiliation_string":"Department of Medical Physics, Memorial Sloan Kettering Cancer Center , New York, NY 10065, USA","institution_ids":["https://openalex.org/I1334819555"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5058010272","https://openalex.org/A5078855608"],"corresponding_institution_ids":["https://openalex.org/I1334819555","https://openalex.org/I133999245"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":3.6602,"has_fulltext":false,"cited_by_count":63,"citation_normalized_percentile":{"value":0.94475695,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":100},"biblio":{"volume":"37","issue":"Supplement_1","first_page":"i443","last_page":"i450"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.991599977016449,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12422","display_name":"Radiomics and Machine Learning in Medical Imaging","score":0.9894000291824341,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/interpretability","display_name":"Interpretability","score":0.9054803848266602},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7928711175918579},{"id":"https://openalex.org/keywords/convolutional-neural-network","display_name":"Convolutional neural network","score":0.7676471471786499},{"id":"https://openalex.org/keywords/glioblastoma","display_name":"Glioblastoma","score":0.6152754426002502},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.6066727638244629},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.5642591118812561},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.5614449381828308},{"id":"https://openalex.org/keywords/key","display_name":"Key (lock)","score":0.5380155444145203},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.516035795211792},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.47972479462623596},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.4460834860801697},{"id":"https://openalex.org/keywords/artificial-neural-network","display_name":"Artificial neural network","score":0.43031054735183716},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.42326873540878296},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.34941720962524414},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.0737343430519104}],"concepts":[{"id":"https://openalex.org/C2781067378","wikidata":"https://www.wikidata.org/wiki/Q17027399","display_name":"Interpretability","level":2,"score":0.9054803848266602},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7928711175918579},{"id":"https://openalex.org/C81363708","wikidata":"https://www.wikidata.org/wiki/Q17084460","display_name":"Convolutional neural network","level":2,"score":0.7676471471786499},{"id":"https://openalex.org/C2776194525","wikidata":"https://www.wikidata.org/wiki/Q282142","display_name":"Glioblastoma","level":2,"score":0.6152754426002502},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.6066727638244629},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.5642591118812561},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.5614449381828308},{"id":"https://openalex.org/C26517878","wikidata":"https://www.wikidata.org/wiki/Q228039","display_name":"Key (lock)","level":2,"score":0.5380155444145203},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.516035795211792},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.47972479462623596},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.4460834860801697},{"id":"https://openalex.org/C50644808","wikidata":"https://www.wikidata.org/wiki/Q192776","display_name":"Artificial neural network","level":2,"score":0.43031054735183716},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.42326873540878296},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.34941720962524414},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0737343430519104},{"id":"https://openalex.org/C502942594","wikidata":"https://www.wikidata.org/wiki/Q3421914","display_name":"Cancer research","level":1,"score":0.0},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C38652104","wikidata":"https://www.wikidata.org/wiki/Q3510521","display_name":"Computer security","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D005909","descriptor_name":"Glioblastoma","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005909","descriptor_name":"Glioblastoma","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005909","descriptor_name":"Glioblastoma","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btab285","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab285","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/37/Supplement_1/i443/39620386/btab285.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:34252964","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/34252964","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:8336441","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8336441","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btab285","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab285","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/37/Supplement_1/i443/39620386/btab285.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Partnerships for the goals","score":0.41999998688697815,"id":"https://metadata.un.org/sdg/17"}],"awards":[{"id":"https://openalex.org/G24641535","display_name":null,"funder_award_id":"BCRF-17-193","funder_id":"https://openalex.org/F4320306260","funder_display_name":"Breast Cancer Research Foundation"}],"funders":[{"id":"https://openalex.org/F4320306260","display_name":"Breast Cancer Research Foundation","ror":"https://ror.org/0348ff195"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3182145057.pdf","grobid_xml":"https://content.openalex.org/works/W3182145057.grobid-xml"},"referenced_works_count":47,"referenced_works":["https://openalex.org/W1019830208","https://openalex.org/W1944525636","https://openalex.org/W1974728289","https://openalex.org/W2012900885","https://openalex.org/W2055650955","https://openalex.org/W2110256992","https://openalex.org/W2110685305","https://openalex.org/W2149441684","https://openalex.org/W2170321459","https://openalex.org/W2198606573","https://openalex.org/W2215684076","https://openalex.org/W2295107390","https://openalex.org/W2311607323","https://openalex.org/W2341106171","https://openalex.org/W2584466409","https://openalex.org/W2623629471","https://openalex.org/W2744183651","https://openalex.org/W2779167663","https://openalex.org/W2784132121","https://openalex.org/W2787497810","https://openalex.org/W2802045597","https://openalex.org/W2809254203","https://openalex.org/W2888221369","https://openalex.org/W2890132714","https://openalex.org/W2899780336","https://openalex.org/W2911565158","https://openalex.org/W2916308420","https://openalex.org/W2919115771","https://openalex.org/W2920675450","https://openalex.org/W2937307539","https://openalex.org/W2938595437","https://openalex.org/W2944869129","https://openalex.org/W2951901532","https://openalex.org/W2954650112","https://openalex.org/W2962858109","https://openalex.org/W2965765842","https://openalex.org/W2973175392","https://openalex.org/W2980820631","https://openalex.org/W2998556046","https://openalex.org/W3007767645","https://openalex.org/W3017710116","https://openalex.org/W3027741335","https://openalex.org/W6698064614","https://openalex.org/W6733549453","https://openalex.org/W6751598137","https://openalex.org/W6754006377","https://openalex.org/W6758199723"],"related_works":["https://openalex.org/W2905433371","https://openalex.org/W4390569940","https://openalex.org/W2888392564","https://openalex.org/W4361193272","https://openalex.org/W4310278675","https://openalex.org/W4388422664","https://openalex.org/W2806259446","https://openalex.org/W2963326959","https://openalex.org/W4247136043","https://openalex.org/W4312407344"],"abstract_inverted_index":{"The":[0],"source":[1],"code":[2],"is":[3],"freely":[4],"available":[5],"at:":[6],"https://github.com/mskspi/PathCNN.":[7]},"counts_by_year":[{"year":2026,"cited_by_count":5},{"year":2025,"cited_by_count":15},{"year":2024,"cited_by_count":19},{"year":2023,"cited_by_count":6},{"year":2022,"cited_by_count":16},{"year":2021,"cited_by_count":2}],"updated_date":"2026-04-21T08:09:41.155169","created_date":"2025-10-10T00:00:00"}
