{"id":"https://openalex.org/W3152755683","doi":"https://doi.org/10.1093/bioinformatics/btab235","title":"SPDE: a multi-functional software for sequence processing and data extraction","display_name":"SPDE: a multi-functional software for sequence processing and data extraction","publication_year":2021,"publication_date":"2021-04-10","ids":{"openalex":"https://openalex.org/W3152755683","doi":"https://doi.org/10.1093/bioinformatics/btab235","mag":"3152755683","pmid":"https://pubmed.ncbi.nlm.nih.gov/33848326"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btab235","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab235","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101599017","display_name":"Dong Xu","orcid":"https://orcid.org/0000-0001-7290-6707"},"institutions":[{"id":"https://openalex.org/I4210128615","display_name":"Chinese Academy of Forestry","ror":"https://ror.org/0360dkv71","country_code":"CN","type":"government","lineage":["https://openalex.org/I4210128615","https://openalex.org/I4210134523"]},{"id":"https://openalex.org/I4210132245","display_name":"Research Institute of Forestry","ror":"https://ror.org/02nmvgz47","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210128615","https://openalex.org/I4210132245","https://openalex.org/I4210134523"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Dong Xu","raw_affiliation_strings":["Key Laboratory of Tree Breeding of Zhejiang Province, The Research Institute of Subtropical of Forestry, Chinese Academy of Forestry , Hangzhou 311400, China","State Key Laboratory of Tree Genetics and Breeding, Chinese Academy of Forestry , Beijing 100091, China"],"affiliations":[{"raw_affiliation_string":"Key Laboratory of Tree Breeding of Zhejiang Province, The Research Institute of Subtropical of Forestry, Chinese Academy of Forestry , Hangzhou 311400, China","institution_ids":["https://openalex.org/I4210128615"]},{"raw_affiliation_string":"State Key Laboratory of Tree Genetics and Breeding, Chinese Academy of Forestry , Beijing 100091, China","institution_ids":["https://openalex.org/I4210132245","https://openalex.org/I4210128615"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025324044","display_name":"Zhuchou Lu","orcid":"https://orcid.org/0000-0001-9335-7583"},"institutions":[{"id":"https://openalex.org/I4210128615","display_name":"Chinese Academy of Forestry","ror":"https://ror.org/0360dkv71","country_code":"CN","type":"government","lineage":["https://openalex.org/I4210128615","https://openalex.org/I4210134523"]},{"id":"https://openalex.org/I4210132245","display_name":"Research Institute of Forestry","ror":"https://ror.org/02nmvgz47","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210128615","https://openalex.org/I4210132245","https://openalex.org/I4210134523"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhuchou Lu","raw_affiliation_strings":["Key Laboratory of Tree Breeding of Zhejiang Province, The Research Institute of Subtropical of Forestry, Chinese Academy of Forestry , Hangzhou 311400, China","State Key Laboratory of Tree Genetics and Breeding, Chinese Academy of Forestry , Beijing 100091, China"],"affiliations":[{"raw_affiliation_string":"Key Laboratory of Tree Breeding of Zhejiang Province, The Research Institute of Subtropical of Forestry, Chinese Academy of Forestry , Hangzhou 311400, China","institution_ids":["https://openalex.org/I4210128615"]},{"raw_affiliation_string":"State Key Laboratory of Tree Genetics and Breeding, Chinese Academy of Forestry , Beijing 100091, China","institution_ids":["https://openalex.org/I4210132245","https://openalex.org/I4210128615"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5009264280","display_name":"Kangming Jin","orcid":"https://orcid.org/0000-0002-5095-4190"},"institutions":[{"id":"https://openalex.org/I4210132245","display_name":"Research Institute of Forestry","ror":"https://ror.org/02nmvgz47","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210128615","https://openalex.org/I4210132245","https://openalex.org/I4210134523"]},{"id":"https://openalex.org/I4210128615","display_name":"Chinese Academy of Forestry","ror":"https://ror.org/0360dkv71","country_code":"CN","type":"government","lineage":["https://openalex.org/I4210128615","https://openalex.org/I4210134523"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Kangming Jin","raw_affiliation_strings":["Key Laboratory of Tree Breeding of Zhejiang Province, The Research Institute of Subtropical of Forestry, Chinese Academy of Forestry , Hangzhou 311400, China","State Key Laboratory of Tree Genetics and Breeding, Chinese Academy of Forestry , Beijing 100091, China"],"affiliations":[{"raw_affiliation_string":"Key Laboratory of Tree Breeding of Zhejiang Province, The Research Institute of Subtropical of Forestry, Chinese Academy of Forestry , Hangzhou 311400, China","institution_ids":["https://openalex.org/I4210128615"]},{"raw_affiliation_string":"State Key Laboratory of Tree Genetics and Breeding, Chinese Academy of Forestry , Beijing 100091, China","institution_ids":["https://openalex.org/I4210132245","https://openalex.org/I4210128615"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5112755885","display_name":"Wenmin Qiu","orcid":"https://orcid.org/0000-0002-4593-2165"},"institutions":[{"id":"https://openalex.org/I4210132245","display_name":"Research Institute of Forestry","ror":"https://ror.org/02nmvgz47","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210128615","https://openalex.org/I4210132245","https://openalex.org/I4210134523"]},{"id":"https://openalex.org/I4210128615","display_name":"Chinese Academy of Forestry","ror":"https://ror.org/0360dkv71","country_code":"CN","type":"government","lineage":["https://openalex.org/I4210128615","https://openalex.org/I4210134523"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Wenmin Qiu","raw_affiliation_strings":["Key Laboratory of Tree Breeding of Zhejiang Province, The Research Institute of Subtropical of Forestry, Chinese Academy of Forestry , Hangzhou 311400, China","State Key Laboratory of Tree Genetics and Breeding, Chinese Academy of Forestry , Beijing 100091, China"],"affiliations":[{"raw_affiliation_string":"Key Laboratory of Tree Breeding of Zhejiang Province, The Research Institute of Subtropical of Forestry, Chinese Academy of Forestry , Hangzhou 311400, China","institution_ids":["https://openalex.org/I4210128615"]},{"raw_affiliation_string":"State Key Laboratory of Tree Genetics and Breeding, Chinese Academy of Forestry , Beijing 100091, China","institution_ids":["https://openalex.org/I4210132245","https://openalex.org/I4210128615"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087065512","display_name":"Guirong Qiao","orcid":"https://orcid.org/0000-0003-3313-2424"},"institutions":[{"id":"https://openalex.org/I4210128615","display_name":"Chinese Academy of Forestry","ror":"https://ror.org/0360dkv71","country_code":"CN","type":"government","lineage":["https://openalex.org/I4210128615","https://openalex.org/I4210134523"]},{"id":"https://openalex.org/I4210132245","display_name":"Research Institute of Forestry","ror":"https://ror.org/02nmvgz47","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210128615","https://openalex.org/I4210132245","https://openalex.org/I4210134523"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Guirong Qiao","raw_affiliation_strings":["Key Laboratory of Tree Breeding of Zhejiang Province, The Research Institute of Subtropical of Forestry, Chinese Academy of Forestry , Hangzhou 311400, China","State Key Laboratory of Tree Genetics and Breeding, Chinese Academy of Forestry , Beijing 100091, China"],"affiliations":[{"raw_affiliation_string":"Key Laboratory of Tree Breeding of Zhejiang Province, The Research Institute of Subtropical of Forestry, Chinese Academy of Forestry , Hangzhou 311400, China","institution_ids":["https://openalex.org/I4210128615"]},{"raw_affiliation_string":"State Key Laboratory of Tree Genetics and Breeding, Chinese Academy of Forestry , Beijing 100091, China","institution_ids":["https://openalex.org/I4210132245","https://openalex.org/I4210128615"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017678130","display_name":"Xiaojiao Han","orcid":"https://orcid.org/0000-0001-6082-7569"},"institutions":[{"id":"https://openalex.org/I4210132245","display_name":"Research Institute of Forestry","ror":"https://ror.org/02nmvgz47","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210128615","https://openalex.org/I4210132245","https://openalex.org/I4210134523"]},{"id":"https://openalex.org/I4210128615","display_name":"Chinese Academy of Forestry","ror":"https://ror.org/0360dkv71","country_code":"CN","type":"government","lineage":["https://openalex.org/I4210128615","https://openalex.org/I4210134523"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Xiaojiao Han","raw_affiliation_strings":["Key Laboratory of Tree Breeding of Zhejiang Province, The Research Institute of Subtropical of Forestry, Chinese Academy of Forestry , Hangzhou 311400, China","State Key Laboratory of Tree Genetics and Breeding, Chinese Academy of Forestry , Beijing 100091, China"],"affiliations":[{"raw_affiliation_string":"Key Laboratory of Tree Breeding of Zhejiang Province, The Research Institute of Subtropical of Forestry, Chinese Academy of Forestry , Hangzhou 311400, China","institution_ids":["https://openalex.org/I4210128615"]},{"raw_affiliation_string":"State Key Laboratory of Tree Genetics and Breeding, Chinese Academy of Forestry , Beijing 100091, China","institution_ids":["https://openalex.org/I4210132245","https://openalex.org/I4210128615"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5009904732","display_name":"Renying Zhuo","orcid":"https://orcid.org/0000-0002-7063-3714"},"institutions":[{"id":"https://openalex.org/I4210128615","display_name":"Chinese Academy of Forestry","ror":"https://ror.org/0360dkv71","country_code":"CN","type":"government","lineage":["https://openalex.org/I4210128615","https://openalex.org/I4210134523"]},{"id":"https://openalex.org/I4210132245","display_name":"Research Institute of Forestry","ror":"https://ror.org/02nmvgz47","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210128615","https://openalex.org/I4210132245","https://openalex.org/I4210134523"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Renying Zhuo","raw_affiliation_strings":["Key Laboratory of Tree Breeding of Zhejiang Province, The Research Institute of Subtropical of Forestry, Chinese Academy of Forestry , Hangzhou 311400, China","State Key Laboratory of Tree Genetics and Breeding, Chinese Academy of Forestry , Beijing 100091, China"],"affiliations":[{"raw_affiliation_string":"Key Laboratory of Tree Breeding of Zhejiang Province, The Research Institute of Subtropical of Forestry, Chinese Academy of Forestry , Hangzhou 311400, China","institution_ids":["https://openalex.org/I4210128615"]},{"raw_affiliation_string":"State Key Laboratory of Tree Genetics and Breeding, Chinese Academy of Forestry , Beijing 100091, China","institution_ids":["https://openalex.org/I4210132245","https://openalex.org/I4210128615"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5009904732","https://openalex.org/A5017678130"],"corresponding_institution_ids":["https://openalex.org/I4210128615","https://openalex.org/I4210132245"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":4.2635,"has_fulltext":false,"cited_by_count":45,"citation_normalized_percentile":{"value":0.95661636,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":100},"biblio":{"volume":"37","issue":"20","first_page":"3686","last_page":"3687"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.9890999794006348,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9865999817848206,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/python","display_name":"Python (programming language)","score":0.846381425857544},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7482835054397583},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.631244957447052},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.5587081909179688},{"id":"https://openalex.org/keywords/data-extraction","display_name":"Data extraction","score":0.5312708616256714},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.449685275554657},{"id":"https://openalex.org/keywords/biological-database","display_name":"Biological database","score":0.4160052239894867},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.392300009727478},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.18742328882217407},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.08247700333595276}],"concepts":[{"id":"https://openalex.org/C519991488","wikidata":"https://www.wikidata.org/wiki/Q28865","display_name":"Python (programming language)","level":2,"score":0.846381425857544},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7482835054397583},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.631244957447052},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.5587081909179688},{"id":"https://openalex.org/C2777466982","wikidata":"https://www.wikidata.org/wiki/Q5227287","display_name":"Data extraction","level":3,"score":0.5312708616256714},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.449685275554657},{"id":"https://openalex.org/C20901353","wikidata":"https://www.wikidata.org/wiki/Q4117139","display_name":"Biological database","level":2,"score":0.4160052239894867},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.392300009727478},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.18742328882217407},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.08247700333595276},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C2779473830","wikidata":"https://www.wikidata.org/wiki/Q1540899","display_name":"MEDLINE","level":2,"score":0.0},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btab235","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab235","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:33848326","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/33848326","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":8,"referenced_works":["https://openalex.org/W1499500424","https://openalex.org/W2020134788","https://openalex.org/W2126419817","https://openalex.org/W2127774996","https://openalex.org/W2132926880","https://openalex.org/W2137015675","https://openalex.org/W2158804744","https://openalex.org/W6629874611"],"related_works":["https://openalex.org/W2341492732","https://openalex.org/W3187193180","https://openalex.org/W106542691","https://openalex.org/W4287027380","https://openalex.org/W1699080303","https://openalex.org/W4297799326","https://openalex.org/W3116064965","https://openalex.org/W3193760048","https://openalex.org/W2207495067","https://openalex.org/W1906486629"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2025,"cited_by_count":5},{"year":2024,"cited_by_count":16},{"year":2023,"cited_by_count":12},{"year":2022,"cited_by_count":10},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":1}],"updated_date":"2025-11-23T05:10:03.516525","created_date":"2025-10-10T00:00:00"}
