{"id":"https://openalex.org/W3144260862","doi":"https://doi.org/10.1093/bioinformatics/btab213","title":"CoCoNet: an efficient deep learning tool for viral metagenome binning","display_name":"CoCoNet: an efficient deep learning tool for viral metagenome binning","publication_year":2021,"publication_date":"2021-04-03","ids":{"openalex":"https://openalex.org/W3144260862","doi":"https://doi.org/10.1093/bioinformatics/btab213","mag":"3144260862","pmid":"https://pubmed.ncbi.nlm.nih.gov/33822891"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btab213","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab213","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5083440317","display_name":"C\u00e9dric Arisdakessian","orcid":"https://orcid.org/0000-0001-5255-0942"},"institutions":[{"id":"https://openalex.org/I117965899","display_name":"University of Hawai\u02bbi at M\u0101noa","ror":"https://ror.org/01wspgy28","country_code":"US","type":"education","lineage":["https://openalex.org/I117965899"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"C\u00e9dric G Arisdakessian","raw_affiliation_strings":["Department of Information and Computer Sciences, University of Hawai\u2018i at M\u0101noa , Honolulu, HI 96822, USA"],"affiliations":[{"raw_affiliation_string":"Department of Information and Computer Sciences, University of Hawai\u2018i at M\u0101noa , Honolulu, HI 96822, USA","institution_ids":["https://openalex.org/I117965899"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003690507","display_name":"Olivia D. Nigro","orcid":"https://orcid.org/0000-0003-2646-0745"},"institutions":[{"id":"https://openalex.org/I149581226","display_name":"Hawaii Pacific University","ror":"https://ror.org/01963ay88","country_code":"US","type":"education","lineage":["https://openalex.org/I149581226"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Olivia D Nigro","raw_affiliation_strings":["Department of Natural Science, Hawai\u2018i Pacific University , Honolulu, HI 96813, USA"],"affiliations":[{"raw_affiliation_string":"Department of Natural Science, Hawai\u2018i Pacific University , Honolulu, HI 96813, USA","institution_ids":["https://openalex.org/I149581226"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053279077","display_name":"Grieg F. Steward","orcid":"https://orcid.org/0000-0001-5988-0522"},"institutions":[{"id":"https://openalex.org/I117965899","display_name":"University of Hawai\u02bbi at M\u0101noa","ror":"https://ror.org/01wspgy28","country_code":"US","type":"education","lineage":["https://openalex.org/I117965899"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Grieg F Steward","raw_affiliation_strings":["Department of Oceanography, University of Hawai\u2018i at M\u0101noa , Honolulu, HI 96822, USA"],"affiliations":[{"raw_affiliation_string":"Department of Oceanography, University of Hawai\u2018i at M\u0101noa , Honolulu, HI 96822, USA","institution_ids":["https://openalex.org/I117965899"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5049084621","display_name":"Guylaine Poisson","orcid":null},"institutions":[{"id":"https://openalex.org/I117965899","display_name":"University of Hawai\u02bbi at M\u0101noa","ror":"https://ror.org/01wspgy28","country_code":"US","type":"education","lineage":["https://openalex.org/I117965899"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Guylaine Poisson","raw_affiliation_strings":["Department of Information and Computer Sciences, University of Hawai\u2018i at M\u0101noa , Honolulu, HI 96822, USA"],"affiliations":[{"raw_affiliation_string":"Department of Information and Computer Sciences, University of Hawai\u2018i at M\u0101noa , Honolulu, HI 96822, USA","institution_ids":["https://openalex.org/I117965899"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5035080938","display_name":"Mahdi Belcaid","orcid":"https://orcid.org/0009-0004-5185-0643"},"institutions":[{"id":"https://openalex.org/I117965899","display_name":"University of Hawai\u02bbi at M\u0101noa","ror":"https://ror.org/01wspgy28","country_code":"US","type":"education","lineage":["https://openalex.org/I117965899"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Mahdi Belcaid","raw_affiliation_strings":["Department of Information and Computer Sciences, University of Hawai\u2018i at M\u0101noa , Honolulu, HI 96822, USA","Hawai\u2018i Institute of Marine Biology , University of Hawai\u2018i at M\u0101noa, Honolulu, HI 96816, USA"],"affiliations":[{"raw_affiliation_string":"Department of Information and Computer Sciences, University of Hawai\u2018i at M\u0101noa , Honolulu, HI 96822, USA","institution_ids":["https://openalex.org/I117965899"]},{"raw_affiliation_string":"Hawai\u2018i Institute of Marine Biology , University of Hawai\u2018i at M\u0101noa, Honolulu, HI 96816, USA","institution_ids":["https://openalex.org/I117965899"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5035080938"],"corresponding_institution_ids":["https://openalex.org/I117965899"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":1.1388,"has_fulltext":false,"cited_by_count":27,"citation_normalized_percentile":{"value":0.77157723,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":96,"max":99},"biblio":{"volume":"37","issue":"18","first_page":"2803","last_page":"2810"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11048","display_name":"Bacteriophages and microbial interactions","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9900000095367432,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/metagenomics","display_name":"Metagenomics","score":0.8759174942970276},{"id":"https://openalex.org/keywords/contig","display_name":"Contig","score":0.7874903678894043},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7361876368522644},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.729873776435852},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.6104716062545776},{"id":"https://openalex.org/keywords/python","display_name":"Python (programming language)","score":0.585784375667572},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.46361762285232544},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.44853100180625916},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2394317090511322},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.14965268969535828},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.10767489671707153},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.07955196499824524}],"concepts":[{"id":"https://openalex.org/C15151743","wikidata":"https://www.wikidata.org/wiki/Q903778","display_name":"Metagenomics","level":3,"score":0.8759174942970276},{"id":"https://openalex.org/C59582021","wikidata":"https://www.wikidata.org/wiki/Q1128751","display_name":"Contig","level":4,"score":0.7874903678894043},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7361876368522644},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.729873776435852},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.6104716062545776},{"id":"https://openalex.org/C519991488","wikidata":"https://www.wikidata.org/wiki/Q28865","display_name":"Python (programming language)","level":2,"score":0.585784375667572},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.46361762285232544},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.44853100180625916},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2394317090511322},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.14965268969535828},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.10767489671707153},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.07955196499824524}],"mesh":[{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D054892","descriptor_name":"Metagenome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D054892","descriptor_name":"Metagenome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D054892","descriptor_name":"Metagenome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D064307","descriptor_name":"Microbiota","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D064307","descriptor_name":"Microbiota","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D064307","descriptor_name":"Microbiota","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btab213","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab213","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:33822891","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/33822891","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.4099999964237213,"id":"https://metadata.un.org/sdg/9","display_name":"Industry, innovation and infrastructure"}],"awards":[{"id":"https://openalex.org/G4998609996","display_name":null,"funder_award_id":"1557349-Ike Wai","funder_id":"https://openalex.org/F4320337378","funder_display_name":"Office of Integrative Activities"}],"funders":[{"id":"https://openalex.org/F4320337378","display_name":"Office of Integrative Activities","ror":"https://ror.org/04k9mqs78"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":44,"referenced_works":["https://openalex.org/W197305801","https://openalex.org/W1522301498","https://openalex.org/W1585140621","https://openalex.org/W1632730578","https://openalex.org/W1684151570","https://openalex.org/W1995614275","https://openalex.org/W1996454352","https://openalex.org/W2015953751","https://openalex.org/W2039608162","https://openalex.org/W2074955520","https://openalex.org/W2100896078","https://openalex.org/W2103901746","https://openalex.org/W2127589108","https://openalex.org/W2134526812","https://openalex.org/W2141202455","https://openalex.org/W2163166295","https://openalex.org/W2173732482","https://openalex.org/W2266521476","https://openalex.org/W2548330566","https://openalex.org/W2599417231","https://openalex.org/W2607519009","https://openalex.org/W2618574054","https://openalex.org/W2751013971","https://openalex.org/W2789843538","https://openalex.org/W2811431636","https://openalex.org/W2897249806","https://openalex.org/W2902131597","https://openalex.org/W2908042565","https://openalex.org/W2938868597","https://openalex.org/W2951912016","https://openalex.org/W2952204926","https://openalex.org/W2958882411","https://openalex.org/W3007490551","https://openalex.org/W3012012790","https://openalex.org/W3023436389","https://openalex.org/W3106188259","https://openalex.org/W4235169531","https://openalex.org/W4394666350","https://openalex.org/W6631190155","https://openalex.org/W6674561012","https://openalex.org/W6679208599","https://openalex.org/W6736726897","https://openalex.org/W6737985840","https://openalex.org/W6776956312"],"related_works":["https://openalex.org/W2330186985","https://openalex.org/W2055448750","https://openalex.org/W2950447380","https://openalex.org/W2345730070","https://openalex.org/W2107854630","https://openalex.org/W4319294554","https://openalex.org/W1986608492","https://openalex.org/W3134563641","https://openalex.org/W4381279187","https://openalex.org/W2115108201"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":11},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":7},{"year":2022,"cited_by_count":4}],"updated_date":"2026-04-22T08:38:42.863108","created_date":"2025-10-10T00:00:00"}
