{"id":"https://openalex.org/W3140162635","doi":"https://doi.org/10.1093/bioinformatics/btab210","title":"Generalized Read-Across prediction using genra-py","display_name":"Generalized Read-Across prediction using genra-py","publication_year":2021,"publication_date":"2021-03-26","ids":{"openalex":"https://openalex.org/W3140162635","doi":"https://doi.org/10.1093/bioinformatics/btab210","mag":"3140162635","pmid":"https://pubmed.ncbi.nlm.nih.gov/33772575"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btab210","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab210","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/37/19/3380/40556511/btab210.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/37/19/3380/40556511/btab210.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101805304","display_name":"Imran Shah","orcid":"https://orcid.org/0000-0003-0808-0140"},"institutions":[{"id":"https://openalex.org/I1302368450","display_name":"Environmental Protection Agency","ror":"https://ror.org/03tns0030","country_code":"US","type":"government","lineage":["https://openalex.org/I1302368450"]},{"id":"https://openalex.org/I1309191912","display_name":"Research Triangle Park Foundation","ror":"https://ror.org/03eqttr49","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1309191912"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Imran Shah","raw_affiliation_strings":["Center for Computational Toxicology and Exposure, Office of Research and Development, United States Environmental Protection Agency , Research Triangle Park, NC 27709, USA"],"affiliations":[{"raw_affiliation_string":"Center for Computational Toxicology and Exposure, Office of Research and Development, United States Environmental Protection Agency , Research Triangle Park, NC 27709, USA","institution_ids":["https://openalex.org/I1309191912","https://openalex.org/I1302368450"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064898738","display_name":"Tia Tate","orcid":"https://orcid.org/0000-0002-7359-1660"},"institutions":[{"id":"https://openalex.org/I1302368450","display_name":"Environmental Protection Agency","ror":"https://ror.org/03tns0030","country_code":"US","type":"government","lineage":["https://openalex.org/I1302368450"]},{"id":"https://openalex.org/I1309191912","display_name":"Research Triangle Park Foundation","ror":"https://ror.org/03eqttr49","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1309191912"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Tia Tate","raw_affiliation_strings":["Center for Computational Toxicology and Exposure, Office of Research and Development, United States Environmental Protection Agency , Research Triangle Park, NC 27709, USA"],"affiliations":[{"raw_affiliation_string":"Center for Computational Toxicology and Exposure, Office of Research and Development, United States Environmental Protection Agency , Research Triangle Park, NC 27709, USA","institution_ids":["https://openalex.org/I1309191912","https://openalex.org/I1302368450"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5034652034","display_name":"Grace Patlewicz","orcid":"https://orcid.org/0000-0003-3863-9689"},"institutions":[{"id":"https://openalex.org/I1302368450","display_name":"Environmental Protection Agency","ror":"https://ror.org/03tns0030","country_code":"US","type":"government","lineage":["https://openalex.org/I1302368450"]},{"id":"https://openalex.org/I1309191912","display_name":"Research Triangle Park Foundation","ror":"https://ror.org/03eqttr49","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1309191912"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Grace Patlewicz","raw_affiliation_strings":["Center for Computational Toxicology and Exposure, Office of Research and Development, United States Environmental Protection Agency , Research Triangle Park, NC 27709, USA"],"affiliations":[{"raw_affiliation_string":"Center for Computational Toxicology and Exposure, Office of Research and Development, United States Environmental Protection Agency , Research Triangle Park, NC 27709, USA","institution_ids":["https://openalex.org/I1309191912","https://openalex.org/I1302368450"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5101805304"],"corresponding_institution_ids":["https://openalex.org/I1302368450","https://openalex.org/I1309191912"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":2.1204,"has_fulltext":false,"cited_by_count":20,"citation_normalized_percentile":{"value":0.88651075,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"37","issue":"19","first_page":"3380","last_page":"3381"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T13180","display_name":"Chemistry and Chemical Engineering","score":0.9678000211715698,"subfield":{"id":"https://openalex.org/subfields/2304","display_name":"Environmental Chemistry"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11948","display_name":"Machine Learning in Materials Science","score":0.9157000184059143,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7960625886917114},{"id":"https://openalex.org/keywords/python","display_name":"Python (programming language)","score":0.668547511100769},{"id":"https://openalex.org/keywords/r-package","display_name":"R package","score":0.631984531879425},{"id":"https://openalex.org/keywords/estimator","display_name":"Estimator","score":0.5744229555130005},{"id":"https://openalex.org/keywords/inference","display_name":"Inference","score":0.5460590720176697},{"id":"https://openalex.org/keywords/key","display_name":"Key (lock)","score":0.5390607118606567},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.5318002104759216},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.516790509223938},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.5141451954841614},{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.5140699148178101},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.42547470331192017},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.15174198150634766},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.14046388864517212},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.0816599428653717}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7960625886917114},{"id":"https://openalex.org/C519991488","wikidata":"https://www.wikidata.org/wiki/Q28865","display_name":"Python (programming language)","level":2,"score":0.668547511100769},{"id":"https://openalex.org/C2984074130","wikidata":"https://www.wikidata.org/wiki/Q73539779","display_name":"R package","level":2,"score":0.631984531879425},{"id":"https://openalex.org/C185429906","wikidata":"https://www.wikidata.org/wiki/Q1130160","display_name":"Estimator","level":2,"score":0.5744229555130005},{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.5460590720176697},{"id":"https://openalex.org/C26517878","wikidata":"https://www.wikidata.org/wiki/Q228039","display_name":"Key (lock)","level":2,"score":0.5390607118606567},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.5318002104759216},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.516790509223938},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.5141451954841614},{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.5140699148178101},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.42547470331192017},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.15174198150634766},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.14046388864517212},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0816599428653717},{"id":"https://openalex.org/C38652104","wikidata":"https://www.wikidata.org/wiki/Q3510521","display_name":"Computer security","level":1,"score":0.0},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btab210","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab210","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/37/19/3380/40556511/btab210.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:33772575","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/33772575","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:8863269","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8863269","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btab210","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab210","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/37/19/3380/40556511/btab210.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320306107","display_name":"U.S. Environmental Protection Agency","ror":"https://ror.org/03tns0030"},{"id":"https://openalex.org/F4320309037","display_name":"Office of Research and Development","ror":"https://ror.org/05rsv9s98"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3140162635.pdf","grobid_xml":"https://content.openalex.org/works/W3140162635.grobid-xml"},"referenced_works_count":11,"referenced_works":["https://openalex.org/W2039183761","https://openalex.org/W2101234009","https://openalex.org/W2346032794","https://openalex.org/W2619737194","https://openalex.org/W2797136488","https://openalex.org/W2912899528","https://openalex.org/W2960232864","https://openalex.org/W3023925438","https://openalex.org/W6675354045","https://openalex.org/W6758486264","https://openalex.org/W6777435079"],"related_works":["https://openalex.org/W2341492732","https://openalex.org/W3187193180","https://openalex.org/W106542691","https://openalex.org/W1699080303","https://openalex.org/W4297799326","https://openalex.org/W3116064965","https://openalex.org/W4287027380","https://openalex.org/W4401016539","https://openalex.org/W4400651710","https://openalex.org/W4403672447"],"abstract_inverted_index":{"The":[0],"package":[1],"is":[2],"available":[3],"from":[4],"github.com/i-shah/genra-py.":[5]},"counts_by_year":[{"year":2025,"cited_by_count":6},{"year":2024,"cited_by_count":4},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":7},{"year":2021,"cited_by_count":2}],"updated_date":"2026-04-21T08:09:41.155169","created_date":"2025-10-10T00:00:00"}