{"id":"https://openalex.org/W3129237594","doi":"https://doi.org/10.1093/bioinformatics/btab106","title":"BigDataProcessor2: a free and open-source Fiji plugin for inspection and processing of TB sized image data","display_name":"BigDataProcessor2: a free and open-source Fiji plugin for inspection and processing of TB sized image data","publication_year":2021,"publication_date":"2021-02-13","ids":{"openalex":"https://openalex.org/W3129237594","doi":"https://doi.org/10.1093/bioinformatics/btab106","mag":"3129237594","pmid":"https://pubmed.ncbi.nlm.nih.gov/33594413"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btab106","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab106","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/37/18/3079/40471531/btab106.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/37/18/3079/40471531/btab106.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5085233233","display_name":"Christian Tischer","orcid":"https://orcid.org/0000-0003-4105-1990"},"institutions":[{"id":"https://openalex.org/I1303691731","display_name":"European Molecular Biology Organization","ror":"https://ror.org/04wfr2810","country_code":"DE","type":"nonprofit","lineage":["https://openalex.org/I1303691731"]},{"id":"https://openalex.org/I4210138560","display_name":"European Molecular Biology Laboratory","ror":"https://ror.org/03mstc592","country_code":"DE","type":"government","lineage":["https://openalex.org/I4210138560"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Christian Tischer","raw_affiliation_strings":["Advanced Light Microscopy Facility , EMBL, 69117, Heidelberg, Germany","Cell Biology and Biophysics Unit, EMBL , 69117, Heidelberg, Germany","Centre for Bioimage Analysis, European Molecular Biology Laboratory (EMBL) , 69117, Heidelberg, Germany"],"affiliations":[{"raw_affiliation_string":"Advanced Light Microscopy Facility , EMBL, 69117, Heidelberg, Germany","institution_ids":[]},{"raw_affiliation_string":"Cell Biology and Biophysics Unit, EMBL , 69117, Heidelberg, Germany","institution_ids":["https://openalex.org/I1303691731"]},{"raw_affiliation_string":"Centre for Bioimage Analysis, European Molecular Biology Laboratory (EMBL) , 69117, Heidelberg, Germany","institution_ids":["https://openalex.org/I4210138560"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005052990","display_name":"Ashis Ravindran","orcid":"https://orcid.org/0000-0003-2942-6235"},"institutions":[{"id":"https://openalex.org/I223822909","display_name":"Heidelberg University","ror":"https://ror.org/038t36y30","country_code":"DE","type":"education","lineage":["https://openalex.org/I223822909"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Ashis Ravindran","raw_affiliation_strings":["University of Heidelberg, Department of Scientific Computing , 69120, Heidelberg, Germany"],"affiliations":[{"raw_affiliation_string":"University of Heidelberg, Department of Scientific Computing , 69120, Heidelberg, Germany","institution_ids":["https://openalex.org/I223822909"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077190266","display_name":"Sabine Reither","orcid":"https://orcid.org/0000-0001-8298-8320"},"institutions":[{"id":"https://openalex.org/I1303691731","display_name":"European Molecular Biology Organization","ror":"https://ror.org/04wfr2810","country_code":"DE","type":"nonprofit","lineage":["https://openalex.org/I1303691731"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Sabine Reither","raw_affiliation_strings":["Advanced Light Microscopy Facility , EMBL, 69117, Heidelberg, Germany","Cell Biology and Biophysics Unit, EMBL , 69117, Heidelberg, Germany"],"affiliations":[{"raw_affiliation_string":"Advanced Light Microscopy Facility , EMBL, 69117, Heidelberg, Germany","institution_ids":[]},{"raw_affiliation_string":"Cell Biology and Biophysics Unit, EMBL , 69117, Heidelberg, Germany","institution_ids":["https://openalex.org/I1303691731"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5070685114","display_name":"Nicolas Chiaruttini","orcid":"https://orcid.org/0000-0003-4722-6245"},"institutions":[{"id":"https://openalex.org/I5124864","display_name":"\u00c9cole Polytechnique F\u00e9d\u00e9rale de Lausanne","ror":"https://ror.org/02s376052","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I5124864"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Nicolas Chiaruttini","raw_affiliation_strings":["BioImaging & Optics Platform (BIOP), Faculty of Life Sciences (SV), Ecole Polytechnique F\u00e9d\u00e9rale de Lausanne , CH-1015 Lausanne, Switzerland"],"affiliations":[{"raw_affiliation_string":"BioImaging & Optics Platform (BIOP), Faculty of Life Sciences (SV), Ecole Polytechnique F\u00e9d\u00e9rale de Lausanne , CH-1015 Lausanne, Switzerland","institution_ids":["https://openalex.org/I5124864"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017298007","display_name":"Rainer Pepperkok","orcid":"https://orcid.org/0000-0002-9762-3583"},"institutions":[{"id":"https://openalex.org/I1303691731","display_name":"European Molecular Biology Organization","ror":"https://ror.org/04wfr2810","country_code":"DE","type":"nonprofit","lineage":["https://openalex.org/I1303691731"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Rainer Pepperkok","raw_affiliation_strings":["Advanced Light Microscopy Facility , EMBL, 69117, Heidelberg, Germany","Cell Biology and Biophysics Unit, EMBL , 69117, Heidelberg, Germany"],"affiliations":[{"raw_affiliation_string":"Advanced Light Microscopy Facility , EMBL, 69117, Heidelberg, Germany","institution_ids":[]},{"raw_affiliation_string":"Cell Biology and Biophysics Unit, EMBL , 69117, Heidelberg, Germany","institution_ids":["https://openalex.org/I1303691731"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5045857974","display_name":"Nils Norlin","orcid":"https://orcid.org/0000-0003-1970-3198"},"institutions":[{"id":"https://openalex.org/I1303691731","display_name":"European Molecular Biology Organization","ror":"https://ror.org/04wfr2810","country_code":"DE","type":"nonprofit","lineage":["https://openalex.org/I1303691731"]},{"id":"https://openalex.org/I187531555","display_name":"Lund University","ror":"https://ror.org/012a77v79","country_code":"SE","type":"education","lineage":["https://openalex.org/I187531555"]}],"countries":["DE","SE"],"is_corresponding":true,"raw_author_name":"Nils Norlin","raw_affiliation_strings":["Cell Biology and Biophysics Unit, EMBL , 69117, Heidelberg, Germany","Department of Experimental Medical Science, 221 84, Lund University , Lund, Sweden","Lund University Bioimaging Centre, 222 41, Lund University , Lund, Sweden"],"affiliations":[{"raw_affiliation_string":"Cell Biology and Biophysics Unit, EMBL , 69117, Heidelberg, Germany","institution_ids":["https://openalex.org/I1303691731"]},{"raw_affiliation_string":"Department of Experimental Medical Science, 221 84, Lund University , Lund, Sweden","institution_ids":["https://openalex.org/I187531555"]},{"raw_affiliation_string":"Lund University Bioimaging Centre, 222 41, Lund University , Lund, Sweden","institution_ids":["https://openalex.org/I187531555"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5045857974","https://openalex.org/A5085233233"],"corresponding_institution_ids":["https://openalex.org/I1303691731","https://openalex.org/I187531555","https://openalex.org/I4210138560"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":3.7559,"has_fulltext":true,"cited_by_count":24,"citation_normalized_percentile":{"value":0.92828754,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":98},"biblio":{"volume":"37","issue":"18","first_page":"3079","last_page":"3081"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9959999918937683,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9959999918937683,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10862","display_name":"AI in cancer detection","score":0.9865000247955322,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12874","display_name":"Digital Imaging for Blood Diseases","score":0.9800000190734863,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/plug-in","display_name":"Plug-in","score":0.842330276966095},{"id":"https://openalex.org/keywords/open-source","display_name":"Open source","score":0.7613298892974854},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6573339700698853},{"id":"https://openalex.org/keywords/image-processing","display_name":"Image processing","score":0.5374819040298462},{"id":"https://openalex.org/keywords/open-source-software","display_name":"Open source software","score":0.5318137407302856},{"id":"https://openalex.org/keywords/image","display_name":"Image (mathematics)","score":0.4781021475791931},{"id":"https://openalex.org/keywords/computer-graphics","display_name":"Computer graphics (images)","score":0.39980316162109375},{"id":"https://openalex.org/keywords/computer-vision","display_name":"Computer vision","score":0.390001118183136},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.3627315163612366},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.1566580832004547}],"concepts":[{"id":"https://openalex.org/C4924752","wikidata":"https://www.wikidata.org/wiki/Q184148","display_name":"Plug-in","level":2,"score":0.842330276966095},{"id":"https://openalex.org/C3018397939","wikidata":"https://www.wikidata.org/wiki/Q3644502","display_name":"Open source","level":3,"score":0.7613298892974854},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6573339700698853},{"id":"https://openalex.org/C9417928","wikidata":"https://www.wikidata.org/wiki/Q1070689","display_name":"Image processing","level":3,"score":0.5374819040298462},{"id":"https://openalex.org/C2988343187","wikidata":"https://www.wikidata.org/wiki/Q1130645","display_name":"Open source software","level":3,"score":0.5318137407302856},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.4781021475791931},{"id":"https://openalex.org/C121684516","wikidata":"https://www.wikidata.org/wiki/Q7600677","display_name":"Computer graphics (images)","level":1,"score":0.39980316162109375},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.390001118183136},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.3627315163612366},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.1566580832004547}],"mesh":[{"descriptor_ui":"D005367","descriptor_name":"Fiji","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005367","descriptor_name":"Fiji","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005367","descriptor_name":"Fiji","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D008853","descriptor_name":"Microscopy","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D008853","descriptor_name":"Microscopy","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D008853","descriptor_name":"Microscopy","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":6,"locations":[{"id":"doi:10.1093/bioinformatics/btab106","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab106","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/37/18/3079/40471531/btab106.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:33594413","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/33594413","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:europepmc.org:7375439","is_oa":true,"landing_page_url":"http://europepmc.org/pmc/articles/PMC8479660","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:infoscience.epfl.ch:291009","is_oa":true,"landing_page_url":"http://infoscience.epfl.ch/record/291009","pdf_url":null,"source":{"id":"https://openalex.org/S4306400487","display_name":"Infoscience (Ecole Polytechnique F\u00e9d\u00e9rale de Lausanne)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"WoS","raw_type":"research article"},{"id":"pmh:oai:lup.lub.lu.se:036c6753-4c4a-46f5-84f6-5df5bb21f6a9","is_oa":false,"landing_page_url":"https://lup.lub.lu.se/record/036c6753-4c4a-46f5-84f6-5df5bb21f6a9","pdf_url":null,"source":{"id":"https://openalex.org/S4306400536","display_name":"Lund University Publications (Lund University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I187531555","host_organization_name":"Lund University","host_organization_lineage":["https://openalex.org/I187531555"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"ISSN: 1367-4803","raw_type":"text"},{"id":"pmh:oai:pubmedcentral.nih.gov:8479660","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8479660","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btab106","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab106","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/37/18/3079/40471531/btab106.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.5899999737739563,"id":"https://metadata.un.org/sdg/9","display_name":"Industry, innovation and infrastructure"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320309792","display_name":"\u00c5ke Wiberg Stiftelse","ror":"https://ror.org/03htnqd27"},{"id":"https://openalex.org/F4320314023","display_name":"European Molecular Biology Laboratory","ror":"https://ror.org/050589e39"},{"id":"https://openalex.org/F4320321613","display_name":"Technische Universit\u00e4t Dresden","ror":"https://ror.org/042aqky30"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3129237594.pdf","grobid_xml":"https://content.openalex.org/works/W3129237594.grobid-xml"},"referenced_works_count":12,"referenced_works":["https://openalex.org/W1580913419","https://openalex.org/W2099540110","https://openalex.org/W2167279371","https://openalex.org/W2170358380","https://openalex.org/W2281148031","https://openalex.org/W2598427385","https://openalex.org/W2741560111","https://openalex.org/W2921959023","https://openalex.org/W3043183114","https://openalex.org/W3046117255","https://openalex.org/W6773117680","https://openalex.org/W6780896356"],"related_works":["https://openalex.org/W4386041260","https://openalex.org/W4298269242","https://openalex.org/W4298401663","https://openalex.org/W4376877853","https://openalex.org/W4300787769","https://openalex.org/W1493891899","https://openalex.org/W4302475558","https://openalex.org/W4301355831","https://openalex.org/W4298345637","https://openalex.org/W4250928611"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":5},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":5},{"year":2021,"cited_by_count":5},{"year":2020,"cited_by_count":2}],"updated_date":"2026-04-21T08:09:41.155169","created_date":"2025-10-10T00:00:00"}
