{"id":"https://openalex.org/W3124630329","doi":"https://doi.org/10.1093/bioinformatics/btab062","title":"essHi-C: essential component analysis of Hi-C matrices","display_name":"essHi-C: essential component analysis of Hi-C matrices","publication_year":2021,"publication_date":"2021-01-28","ids":{"openalex":"https://openalex.org/W3124630329","doi":"https://doi.org/10.1093/bioinformatics/btab062","mag":"3124630329","pmid":"https://pubmed.ncbi.nlm.nih.gov/33523102"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btab062","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab062","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"preprint","indexed_in":["arxiv","crossref","datacite","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://arxiv.org/pdf/2101.10645","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5000004875","display_name":"Stefano Franzini","orcid":"https://orcid.org/0000-0002-0158-1922"},"institutions":[{"id":"https://openalex.org/I138549579","display_name":"Scuola Internazionale Superiore di Studi Avanzati","ror":"https://ror.org/004fze387","country_code":"IT","type":"education","lineage":["https://openalex.org/I138549579"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Stefano Franzini","raw_affiliation_strings":["SISSA \u2013 Scuola Internazionale Superiore di Studi Avanzati , Trieste I-34077, Italy","SISSA - Scuola internazionale Superiore di Studi Avanzati, Via Bonomea 265, I-34077 Trieste, Italy"],"affiliations":[{"raw_affiliation_string":"SISSA \u2013 Scuola Internazionale Superiore di Studi Avanzati , Trieste I-34077, Italy","institution_ids":["https://openalex.org/I138549579"]},{"raw_affiliation_string":"SISSA - Scuola internazionale Superiore di Studi Avanzati, Via Bonomea 265, I-34077 Trieste, Italy","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090755680","display_name":"Marco Di Stefano","orcid":"https://orcid.org/0000-0001-6195-4754"},"institutions":[{"id":"https://openalex.org/I4210142206","display_name":"Centro Nacional de An\u00e1lisis Gen\u00f3mico","ror":"https://ror.org/03mynna02","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210142206"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Marco Di Stefano","raw_affiliation_strings":["Structural Genomics Group, CNAG-CRG Centre Nacional d\u2019An\u00e1lisi Gen\u00f3mica \u2013 Centre de Regulaci\u00f3 Gen\u00f3mica , Barcelona 08028, Spain","Structural genomics Group, CNAG-CRG Centre Nacional d'An\u00e1lisi Gen\u00f3mica - Centre de Regulaci\u00f3 Gen\u00f3mica, Barcelona, 08028, Spain"],"affiliations":[{"raw_affiliation_string":"Structural Genomics Group, CNAG-CRG Centre Nacional d\u2019An\u00e1lisi Gen\u00f3mica \u2013 Centre de Regulaci\u00f3 Gen\u00f3mica , Barcelona 08028, Spain","institution_ids":["https://openalex.org/I4210142206"]},{"raw_affiliation_string":"Structural genomics Group, CNAG-CRG Centre Nacional d'An\u00e1lisi Gen\u00f3mica - Centre de Regulaci\u00f3 Gen\u00f3mica, Barcelona, 08028, Spain","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5083284785","display_name":"Cristian Micheletti","orcid":"https://orcid.org/0000-0002-1022-1638"},"institutions":[{"id":"https://openalex.org/I138549579","display_name":"Scuola Internazionale Superiore di Studi Avanzati","ror":"https://ror.org/004fze387","country_code":"IT","type":"education","lineage":["https://openalex.org/I138549579"]}],"countries":["IT"],"is_corresponding":true,"raw_author_name":"Cristian Micheletti","raw_affiliation_strings":["SISSA \u2013 Scuola Internazionale Superiore di Studi Avanzati , Trieste I-34077, Italy","International School for Advanced Studies"],"affiliations":[{"raw_affiliation_string":"SISSA \u2013 Scuola Internazionale Superiore di Studi Avanzati , Trieste I-34077, Italy","institution_ids":["https://openalex.org/I138549579"]},{"raw_affiliation_string":"International School for Advanced Studies","institution_ids":["https://openalex.org/I138549579"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5083284785"],"corresponding_institution_ids":["https://openalex.org/I138549579"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.0,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.00605026,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"37","issue":"15","first_page":"2088","last_page":"2094"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/robustness","display_name":"Robustness (evolution)","score":0.738316535949707},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5479840636253357},{"id":"https://openalex.org/keywords/component","display_name":"Component (thermodynamics)","score":0.5388469696044922},{"id":"https://openalex.org/keywords/cluster-analysis","display_name":"Cluster analysis","score":0.5237873792648315},{"id":"https://openalex.org/keywords/clarity","display_name":"CLARITY","score":0.4687652289867401},{"id":"https://openalex.org/keywords/random-matrix","display_name":"Random matrix","score":0.44929587841033936},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.4376223683357239},{"id":"https://openalex.org/keywords/biological-system","display_name":"Biological system","score":0.4168270230293274},{"id":"https://openalex.org/keywords/folding","display_name":"Folding (DSP implementation)","score":0.41269657015800476},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4016701579093933},{"id":"https://openalex.org/keywords/topology","display_name":"Topology (electrical circuits)","score":0.3276641070842743},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.325314998626709},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.319424033164978},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.28702133893966675},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.2135566771030426},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.20790114998817444},{"id":"https://openalex.org/keywords/combinatorics","display_name":"Combinatorics","score":0.20578190684318542},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.19372454285621643},{"id":"https://openalex.org/keywords/eigenvalues-and-eigenvectors","display_name":"Eigenvalues and eigenvectors","score":0.18123307824134827},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.1210525631904602},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.0950080156326294},{"id":"https://openalex.org/keywords/molecular-biology","display_name":"Molecular biology","score":0.0910772979259491}],"concepts":[{"id":"https://openalex.org/C63479239","wikidata":"https://www.wikidata.org/wiki/Q7353546","display_name":"Robustness (evolution)","level":3,"score":0.738316535949707},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5479840636253357},{"id":"https://openalex.org/C168167062","wikidata":"https://www.wikidata.org/wiki/Q1117970","display_name":"Component (thermodynamics)","level":2,"score":0.5388469696044922},{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.5237873792648315},{"id":"https://openalex.org/C2777146004","wikidata":"https://www.wikidata.org/wiki/Q14949826","display_name":"CLARITY","level":2,"score":0.4687652289867401},{"id":"https://openalex.org/C64812099","wikidata":"https://www.wikidata.org/wiki/Q176604","display_name":"Random matrix","level":3,"score":0.44929587841033936},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.4376223683357239},{"id":"https://openalex.org/C186060115","wikidata":"https://www.wikidata.org/wiki/Q30336093","display_name":"Biological system","level":1,"score":0.4168270230293274},{"id":"https://openalex.org/C2776545253","wikidata":"https://www.wikidata.org/wiki/Q5464292","display_name":"Folding (DSP implementation)","level":2,"score":0.41269657015800476},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4016701579093933},{"id":"https://openalex.org/C184720557","wikidata":"https://www.wikidata.org/wiki/Q7825049","display_name":"Topology (electrical circuits)","level":2,"score":0.3276641070842743},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.325314998626709},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.319424033164978},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.28702133893966675},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.2135566771030426},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.20790114998817444},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.20578190684318542},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.19372454285621643},{"id":"https://openalex.org/C158693339","wikidata":"https://www.wikidata.org/wiki/Q190524","display_name":"Eigenvalues and eigenvectors","level":2,"score":0.18123307824134827},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.1210525631904602},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0950080156326294},{"id":"https://openalex.org/C153911025","wikidata":"https://www.wikidata.org/wiki/Q7202","display_name":"Molecular biology","level":1,"score":0.0910772979259491},{"id":"https://openalex.org/C119599485","wikidata":"https://www.wikidata.org/wiki/Q43035","display_name":"Electrical engineering","level":1,"score":0.0},{"id":"https://openalex.org/C97355855","wikidata":"https://www.wikidata.org/wiki/Q11473","display_name":"Thermodynamics","level":1,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0}],"mesh":[],"locations_count":5,"locations":[{"id":"doi:10.1093/bioinformatics/btab062","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab062","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:33523102","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/33523102","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:arXiv.org:2101.10645","is_oa":true,"landing_page_url":"http://arxiv.org/abs/2101.10645","pdf_url":"https://arxiv.org/pdf/2101.10645","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"text"},{"id":"mag:3124630329","is_oa":true,"landing_page_url":"http://arxiv.org/pdf/2101.10645.pdf","pdf_url":null,"source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"arXiv (Cornell University)","raw_type":null},{"id":"doi:10.48550/arxiv.2101.10645","is_oa":true,"landing_page_url":"https://doi.org/10.48550/arxiv.2101.10645","pdf_url":null,"source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article"}],"best_oa_location":{"id":"pmh:oai:arXiv.org:2101.10645","is_oa":true,"landing_page_url":"http://arxiv.org/abs/2101.10645","pdf_url":"https://arxiv.org/pdf/2101.10645","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"text"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3124630329.pdf","grobid_xml":"https://content.openalex.org/works/W3124630329.grobid-xml"},"referenced_works_count":49,"referenced_works":["https://openalex.org/W1489607851","https://openalex.org/W1859117663","https://openalex.org/W1896708637","https://openalex.org/W1973062929","https://openalex.org/W2001576815","https://openalex.org/W2014862205","https://openalex.org/W2056482755","https://openalex.org/W2064727535","https://openalex.org/W2070021921","https://openalex.org/W2073026107","https://openalex.org/W2074915491","https://openalex.org/W2090037139","https://openalex.org/W2097798909","https://openalex.org/W2101249563","https://openalex.org/W2102368172","https://openalex.org/W2106393249","https://openalex.org/W2132589721","https://openalex.org/W2142270559","https://openalex.org/W2159479483","https://openalex.org/W2161212572","https://openalex.org/W2162536970","https://openalex.org/W2163412235","https://openalex.org/W2169389191","https://openalex.org/W2252575065","https://openalex.org/W2293954090","https://openalex.org/W2551092411","https://openalex.org/W2557097554","https://openalex.org/W2731989040","https://openalex.org/W2738924259","https://openalex.org/W2765567136","https://openalex.org/W2766235943","https://openalex.org/W2887206273","https://openalex.org/W2904120442","https://openalex.org/W2937408164","https://openalex.org/W2949773289","https://openalex.org/W2951050465","https://openalex.org/W2951559295","https://openalex.org/W2952203741","https://openalex.org/W2952664869","https://openalex.org/W2952940726","https://openalex.org/W2952979547","https://openalex.org/W2953095894","https://openalex.org/W2963467070","https://openalex.org/W2980813151","https://openalex.org/W3013543222","https://openalex.org/W3102375613","https://openalex.org/W3106205370","https://openalex.org/W3125968884","https://openalex.org/W6767701940"],"related_works":["https://openalex.org/W2800751930","https://openalex.org/W2905767723","https://openalex.org/W2949773289","https://openalex.org/W2952117848","https://openalex.org/W3185132747","https://openalex.org/W3039284858","https://openalex.org/W2905598336","https://openalex.org/W3164534693","https://openalex.org/W3205881298","https://openalex.org/W3121637338","https://openalex.org/W2120753776","https://openalex.org/W3175495956","https://openalex.org/W2091478289","https://openalex.org/W3097580977","https://openalex.org/W3100172131","https://openalex.org/W2913594598","https://openalex.org/W1994142297","https://openalex.org/W3207471891"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[],"updated_date":"2026-03-10T16:38:18.471706","created_date":"2025-10-10T00:00:00"}
