{"id":"https://openalex.org/W3125201335","doi":"https://doi.org/10.1093/bioinformatics/btab038","title":"Using single-cell cytometry to illustrate integrated multi-perspective evaluation of clustering algorithms using Pareto fronts","display_name":"Using single-cell cytometry to illustrate integrated multi-perspective evaluation of clustering algorithms using Pareto fronts","publication_year":2021,"publication_date":"2021-01-18","ids":{"openalex":"https://openalex.org/W3125201335","doi":"https://doi.org/10.1093/bioinformatics/btab038","mag":"3125201335","pmid":"https://pubmed.ncbi.nlm.nih.gov/33508103"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btab038","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab038","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/37/14/1972/39569299/btab038.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/37/14/1972/39569299/btab038.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5011549686","display_name":"Givanna Putri","orcid":"https://orcid.org/0000-0002-7399-8014"},"institutions":[{"id":"https://openalex.org/I129604602","display_name":"University of Sydney","ror":"https://ror.org/0384j8v12","country_code":"AU","type":"education","lineage":["https://openalex.org/I129604602"]}],"countries":["AU"],"is_corresponding":true,"raw_author_name":"Givanna H Putri","raw_affiliation_strings":["Charles Perkins Centre, The University of Sydney , Sydney 2006, Australia","School of Computer Science, The University of Sydney , Sydney 2006, Australia"],"affiliations":[{"raw_affiliation_string":"Charles Perkins Centre, The University of Sydney , Sydney 2006, Australia","institution_ids":["https://openalex.org/I129604602"]},{"raw_affiliation_string":"School of Computer Science, The University of Sydney , Sydney 2006, Australia","institution_ids":["https://openalex.org/I129604602"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5079360974","display_name":"Irena Koprinska","orcid":"https://orcid.org/0000-0001-9479-4187"},"institutions":[{"id":"https://openalex.org/I129604602","display_name":"University of Sydney","ror":"https://ror.org/0384j8v12","country_code":"AU","type":"education","lineage":["https://openalex.org/I129604602"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Irena Koprinska","raw_affiliation_strings":["School of Computer Science, The University of Sydney , Sydney 2006, Australia"],"affiliations":[{"raw_affiliation_string":"School of Computer Science, The University of Sydney , Sydney 2006, Australia","institution_ids":["https://openalex.org/I129604602"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5000745165","display_name":"Thomas M. Ashhurst","orcid":"https://orcid.org/0000-0001-7269-7773"},"institutions":[{"id":"https://openalex.org/I129604602","display_name":"University of Sydney","ror":"https://ror.org/0384j8v12","country_code":"AU","type":"education","lineage":["https://openalex.org/I129604602"]},{"id":"https://openalex.org/I2800664540","display_name":"Centenary Institute","ror":"https://ror.org/05gvja138","country_code":"AU","type":"facility","lineage":["https://openalex.org/I2800664540"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Thomas M Ashhurst","raw_affiliation_strings":["Charles Perkins Centre, The University of Sydney , Sydney 2006, Australia","Sydney Cytometry Facility, The University of Sydney and Centenary Institute , Sydney 2006, Australia"],"affiliations":[{"raw_affiliation_string":"Charles Perkins Centre, The University of Sydney , Sydney 2006, Australia","institution_ids":["https://openalex.org/I129604602"]},{"raw_affiliation_string":"Sydney Cytometry Facility, The University of Sydney and Centenary Institute , Sydney 2006, Australia","institution_ids":["https://openalex.org/I2800664540","https://openalex.org/I129604602"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5021189214","display_name":"Nicholas J. C. King","orcid":"https://orcid.org/0000-0002-3877-9772"},"institutions":[{"id":"https://openalex.org/I129604602","display_name":"University of Sydney","ror":"https://ror.org/0384j8v12","country_code":"AU","type":"education","lineage":["https://openalex.org/I129604602"]},{"id":"https://openalex.org/I2800664540","display_name":"Centenary Institute","ror":"https://ror.org/05gvja138","country_code":"AU","type":"facility","lineage":["https://openalex.org/I2800664540"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Nicholas J C King","raw_affiliation_strings":["Charles Perkins Centre, The University of Sydney , Sydney 2006, Australia","Discipline of Pathology, The University of Sydney , Sydney 2006, Australia","Sydney Cytometry Facility, The University of Sydney and Centenary Institute , Sydney 2006, Australia"],"affiliations":[{"raw_affiliation_string":"Charles Perkins Centre, The University of Sydney , Sydney 2006, Australia","institution_ids":["https://openalex.org/I129604602"]},{"raw_affiliation_string":"Discipline of Pathology, The University of Sydney , Sydney 2006, Australia","institution_ids":["https://openalex.org/I129604602"]},{"raw_affiliation_string":"Sydney Cytometry Facility, The University of Sydney and Centenary Institute , Sydney 2006, Australia","institution_ids":["https://openalex.org/I2800664540","https://openalex.org/I129604602"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5071891762","display_name":"Mark Read","orcid":"https://orcid.org/0000-0002-1481-4780"},"institutions":[{"id":"https://openalex.org/I129604602","display_name":"University of Sydney","ror":"https://ror.org/0384j8v12","country_code":"AU","type":"education","lineage":["https://openalex.org/I129604602"]}],"countries":["AU"],"is_corresponding":true,"raw_author_name":"Mark N Read","raw_affiliation_strings":["Charles Perkins Centre, The University of Sydney , Sydney 2006, Australia","School of Computer Science, The University of Sydney , Sydney 2006, Australia","Westmead Initiative, The University of Sydney , Sydney 2006, Australia"],"affiliations":[{"raw_affiliation_string":"Charles Perkins Centre, The University of Sydney , Sydney 2006, Australia","institution_ids":["https://openalex.org/I129604602"]},{"raw_affiliation_string":"School of Computer Science, The University of Sydney , Sydney 2006, Australia","institution_ids":["https://openalex.org/I129604602"]},{"raw_affiliation_string":"Westmead Initiative, The University of Sydney , Sydney 2006, Australia","institution_ids":["https://openalex.org/I129604602"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5011549686","https://openalex.org/A5071891762"],"corresponding_institution_ids":["https://openalex.org/I129604602"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.2413,"has_fulltext":true,"cited_by_count":3,"citation_normalized_percentile":{"value":0.50810092,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":"37","issue":"14","first_page":"1972","last_page":"1981"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9488999843597412,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11321","display_name":"Error Correcting Code Techniques","score":0.9423999786376953,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/cluster-analysis","display_name":"Cluster analysis","score":0.818046510219574},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7786065340042114},{"id":"https://openalex.org/keywords/benchmark","display_name":"Benchmark (surveying)","score":0.7155594825744629},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.615628719329834},{"id":"https://openalex.org/keywords/metric","display_name":"Metric (unit)","score":0.5687255263328552},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.5381532311439514},{"id":"https://openalex.org/keywords/pareto-principle","display_name":"Pareto principle","score":0.4755373001098633},{"id":"https://openalex.org/keywords/protocol","display_name":"Protocol (science)","score":0.46777644753456116},{"id":"https://openalex.org/keywords/multi-objective-optimization","display_name":"Multi-objective optimization","score":0.44027653336524963},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.3088250160217285},{"id":"https://openalex.org/keywords/mathematical-optimization","display_name":"Mathematical optimization","score":0.19501152634620667},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.14468300342559814}],"concepts":[{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.818046510219574},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7786065340042114},{"id":"https://openalex.org/C185798385","wikidata":"https://www.wikidata.org/wiki/Q1161707","display_name":"Benchmark (surveying)","level":2,"score":0.7155594825744629},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.615628719329834},{"id":"https://openalex.org/C176217482","wikidata":"https://www.wikidata.org/wiki/Q860554","display_name":"Metric (unit)","level":2,"score":0.5687255263328552},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.5381532311439514},{"id":"https://openalex.org/C137635306","wikidata":"https://www.wikidata.org/wiki/Q182667","display_name":"Pareto principle","level":2,"score":0.4755373001098633},{"id":"https://openalex.org/C2780385302","wikidata":"https://www.wikidata.org/wiki/Q367158","display_name":"Protocol (science)","level":3,"score":0.46777644753456116},{"id":"https://openalex.org/C68781425","wikidata":"https://www.wikidata.org/wiki/Q2052203","display_name":"Multi-objective optimization","level":2,"score":0.44027653336524963},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.3088250160217285},{"id":"https://openalex.org/C126255220","wikidata":"https://www.wikidata.org/wiki/Q141495","display_name":"Mathematical optimization","level":1,"score":0.19501152634620667},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.14468300342559814},{"id":"https://openalex.org/C21547014","wikidata":"https://www.wikidata.org/wiki/Q1423657","display_name":"Operations management","level":1,"score":0.0},{"id":"https://openalex.org/C204787440","wikidata":"https://www.wikidata.org/wiki/Q188504","display_name":"Alternative medicine","level":2,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C13280743","wikidata":"https://www.wikidata.org/wiki/Q131089","display_name":"Geodesy","level":1,"score":0.0},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.0},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.0},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btab038","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab038","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/37/14/1972/39569299/btab038.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:33508103","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/33508103","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btab038","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab038","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/37/14/1972/39569299/btab038.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.44999998807907104,"display_name":"Partnerships for the goals","id":"https://metadata.un.org/sdg/17"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320315885","display_name":"Australian Government","ror":"https://ror.org/0314h5y94"},{"id":"https://openalex.org/F4320318502","display_name":"International Society for Advancement of Cytometry","ror":null}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3125201335.pdf","grobid_xml":"https://content.openalex.org/works/W3125201335.grobid-xml"},"referenced_works_count":51,"referenced_works":["https://openalex.org/W1631320694","https://openalex.org/W1965827638","https://openalex.org/W1979034309","https://openalex.org/W1987971958","https://openalex.org/W1989762673","https://openalex.org/W1993835819","https://openalex.org/W2069089843","https://openalex.org/W2095664313","https://openalex.org/W2101234009","https://openalex.org/W2112493011","https://openalex.org/W2126105956","https://openalex.org/W2131456395","https://openalex.org/W2135364554","https://openalex.org/W2140736261","https://openalex.org/W2152803686","https://openalex.org/W2157471104","https://openalex.org/W2181067433","https://openalex.org/W2262188337","https://openalex.org/W2318878471","https://openalex.org/W2346039638","https://openalex.org/W2358421111","https://openalex.org/W2417793772","https://openalex.org/W2461073387","https://openalex.org/W2478852912","https://openalex.org/W2507245649","https://openalex.org/W2520514472","https://openalex.org/W2598326928","https://openalex.org/W2612519453","https://openalex.org/W2618735189","https://openalex.org/W2767084044","https://openalex.org/W2786672974","https://openalex.org/W2884197618","https://openalex.org/W2885781875","https://openalex.org/W2886347923","https://openalex.org/W2889964088","https://openalex.org/W2916827880","https://openalex.org/W2947877009","https://openalex.org/W2951566836","https://openalex.org/W2951624434","https://openalex.org/W3003257820","https://openalex.org/W3093547867","https://openalex.org/W3103145119","https://openalex.org/W3151991870","https://openalex.org/W3152225197","https://openalex.org/W4213108508","https://openalex.org/W4235169531","https://openalex.org/W4238101571","https://openalex.org/W4251287806","https://openalex.org/W6675354045","https://openalex.org/W6748816842","https://openalex.org/W6754826416"],"related_works":["https://openalex.org/W1482441085","https://openalex.org/W2966858528","https://openalex.org/W2151687600","https://openalex.org/W2402393579","https://openalex.org/W2996366161","https://openalex.org/W2090178682","https://openalex.org/W2001591765","https://openalex.org/W4241467429","https://openalex.org/W2073147994","https://openalex.org/W1588199609"],"abstract_inverted_index":{"Implementation":[0],"of":[1],"our":[2],"Pareto":[3],"front":[4],"methodology":[5],"and":[6],"all":[7],"scripts":[8],"to":[9],"reproduce":[10],"this":[11],"article":[12],"are":[13],"available":[14],"at":[15],"https://github.com/ghar1821/ParetoBench.":[16]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
