{"id":"https://openalex.org/W3124747858","doi":"https://doi.org/10.1093/bioinformatics/btab005","title":"Genome-scale <i>de novo</i> assembly using ALGA","display_name":"Genome-scale <i>de novo</i> assembly using ALGA","publication_year":2021,"publication_date":"2021-01-06","ids":{"openalex":"https://openalex.org/W3124747858","doi":"https://doi.org/10.1093/bioinformatics/btab005","mag":"3124747858","pmid":"https://pubmed.ncbi.nlm.nih.gov/33471088"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btab005","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab005","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/37/12/1644/39119213/btab005.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/37/12/1644/39119213/btab005.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5052109290","display_name":"Sylwester Swat","orcid":"https://orcid.org/0000-0001-8763-0045"},"institutions":[{"id":"https://openalex.org/I46597724","display_name":"Pozna\u0144 University of Technology","ror":"https://ror.org/00p7p3302","country_code":"PL","type":"education","lineage":["https://openalex.org/I46597724"]}],"countries":["PL"],"is_corresponding":false,"raw_author_name":"Sylwester Swat","raw_affiliation_strings":["Poznan University of Technology, Institute of Computing Science , 60-965 Poznan, Poland"],"affiliations":[{"raw_affiliation_string":"Poznan University of Technology, Institute of Computing Science , 60-965 Poznan, Poland","institution_ids":["https://openalex.org/I46597724"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062328374","display_name":"Artur Laskowski","orcid":null},"institutions":[{"id":"https://openalex.org/I46597724","display_name":"Pozna\u0144 University of Technology","ror":"https://ror.org/00p7p3302","country_code":"PL","type":"education","lineage":["https://openalex.org/I46597724"]}],"countries":["PL"],"is_corresponding":false,"raw_author_name":"Artur Laskowski","raw_affiliation_strings":["Poznan University of Technology, Institute of Computing Science , 60-965 Poznan, Poland"],"affiliations":[{"raw_affiliation_string":"Poznan University of Technology, Institute of Computing Science , 60-965 Poznan, Poland","institution_ids":["https://openalex.org/I46597724"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076619623","display_name":"Jan Badura","orcid":"https://orcid.org/0000-0002-3222-9542"},"institutions":[{"id":"https://openalex.org/I46597724","display_name":"Pozna\u0144 University of Technology","ror":"https://ror.org/00p7p3302","country_code":"PL","type":"education","lineage":["https://openalex.org/I46597724"]}],"countries":["PL"],"is_corresponding":false,"raw_author_name":"Jan Badura","raw_affiliation_strings":["Poznan University of Technology, Institute of Computing Science , 60-965 Poznan, Poland"],"affiliations":[{"raw_affiliation_string":"Poznan University of Technology, Institute of Computing Science , 60-965 Poznan, Poland","institution_ids":["https://openalex.org/I46597724"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058606256","display_name":"Wojciech Frohmberg","orcid":"https://orcid.org/0000-0003-0064-1775"},"institutions":[{"id":"https://openalex.org/I46597724","display_name":"Pozna\u0144 University of Technology","ror":"https://ror.org/00p7p3302","country_code":"PL","type":"education","lineage":["https://openalex.org/I46597724"]}],"countries":["PL"],"is_corresponding":false,"raw_author_name":"Wojciech Frohmberg","raw_affiliation_strings":["Poznan University of Technology, Institute of Computing Science , 60-965 Poznan, Poland"],"affiliations":[{"raw_affiliation_string":"Poznan University of Technology, Institute of Computing Science , 60-965 Poznan, Poland","institution_ids":["https://openalex.org/I46597724"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5009629429","display_name":"Pawe\u0142 Wojciechowski","orcid":"https://orcid.org/0000-0001-8020-9493"},"institutions":[{"id":"https://openalex.org/I4210152414","display_name":"Institute of Bioorganic Chemistry, Polish Academy of Sciences","ror":"https://ror.org/04ejdtr48","country_code":"PL","type":"facility","lineage":["https://openalex.org/I4210152414","https://openalex.org/I99542240"]},{"id":"https://openalex.org/I46597724","display_name":"Pozna\u0144 University of Technology","ror":"https://ror.org/00p7p3302","country_code":"PL","type":"education","lineage":["https://openalex.org/I46597724"]}],"countries":["PL"],"is_corresponding":false,"raw_author_name":"Pawel Wojciechowski","raw_affiliation_strings":["Institute of Bioorganic Chemistry, Polish Academy of Sciences , 61-704 Poznan, Poland","Poznan University of Technology, Institute of Computing Science , 60-965 Poznan, Poland"],"affiliations":[{"raw_affiliation_string":"Institute of Bioorganic Chemistry, Polish Academy of Sciences , 61-704 Poznan, Poland","institution_ids":["https://openalex.org/I4210152414"]},{"raw_affiliation_string":"Poznan University of Technology, Institute of Computing Science , 60-965 Poznan, Poland","institution_ids":["https://openalex.org/I46597724"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5035699932","display_name":"Aleksandra \u015awiercz","orcid":"https://orcid.org/0000-0002-5574-8222"},"institutions":[{"id":"https://openalex.org/I4210152414","display_name":"Institute of Bioorganic Chemistry, Polish Academy of Sciences","ror":"https://ror.org/04ejdtr48","country_code":"PL","type":"facility","lineage":["https://openalex.org/I4210152414","https://openalex.org/I99542240"]},{"id":"https://openalex.org/I46597724","display_name":"Pozna\u0144 University of Technology","ror":"https://ror.org/00p7p3302","country_code":"PL","type":"education","lineage":["https://openalex.org/I46597724"]}],"countries":["PL"],"is_corresponding":false,"raw_author_name":"Aleksandra Swiercz","raw_affiliation_strings":["Institute of Bioorganic Chemistry, Polish Academy of Sciences , 61-704 Poznan, Poland","Poznan University of Technology, Institute of Computing Science , 60-965 Poznan, Poland"],"affiliations":[{"raw_affiliation_string":"Institute of Bioorganic Chemistry, Polish Academy of Sciences , 61-704 Poznan, Poland","institution_ids":["https://openalex.org/I4210152414"]},{"raw_affiliation_string":"Poznan University of Technology, Institute of Computing Science , 60-965 Poznan, Poland","institution_ids":["https://openalex.org/I46597724"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036768913","display_name":"Marta Kasprzak","orcid":"https://orcid.org/0000-0002-9863-5412"},"institutions":[{"id":"https://openalex.org/I46597724","display_name":"Pozna\u0144 University of Technology","ror":"https://ror.org/00p7p3302","country_code":"PL","type":"education","lineage":["https://openalex.org/I46597724"]}],"countries":["PL"],"is_corresponding":true,"raw_author_name":"Marta Kasprzak","raw_affiliation_strings":["Poznan University of Technology, Institute of Computing Science , 60-965 Poznan, Poland"],"affiliations":[{"raw_affiliation_string":"Poznan University of Technology, Institute of Computing Science , 60-965 Poznan, Poland","institution_ids":["https://openalex.org/I46597724"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5024504556","display_name":"Jacek B\u0142a\u017cewicz","orcid":"https://orcid.org/0000-0001-8326-1094"},"institutions":[{"id":"https://openalex.org/I4210152414","display_name":"Institute of Bioorganic Chemistry, Polish Academy of Sciences","ror":"https://ror.org/04ejdtr48","country_code":"PL","type":"facility","lineage":["https://openalex.org/I4210152414","https://openalex.org/I99542240"]},{"id":"https://openalex.org/I46597724","display_name":"Pozna\u0144 University of Technology","ror":"https://ror.org/00p7p3302","country_code":"PL","type":"education","lineage":["https://openalex.org/I46597724"]}],"countries":["PL"],"is_corresponding":false,"raw_author_name":"Jacek Blazewicz","raw_affiliation_strings":["Institute of Bioorganic Chemistry, Polish Academy of Sciences , 61-704 Poznan, Poland","Poznan University of Technology, Institute of Computing Science , 60-965 Poznan, Poland"],"affiliations":[{"raw_affiliation_string":"Institute of Bioorganic Chemistry, Polish Academy of Sciences , 61-704 Poznan, Poland","institution_ids":["https://openalex.org/I4210152414"]},{"raw_affiliation_string":"Poznan University of Technology, Institute of Computing Science , 60-965 Poznan, Poland","institution_ids":["https://openalex.org/I46597724"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5036768913"],"corresponding_institution_ids":["https://openalex.org/I46597724"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":0.732,"has_fulltext":true,"cited_by_count":12,"citation_normalized_percentile":{"value":0.68185632,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"37","issue":"12","first_page":"1644","last_page":"1651"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.9927999973297119,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9879999756813049,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.5889937281608582},{"id":"https://openalex.org/keywords/sequence-assembly","display_name":"Sequence assembly","score":0.5769472718238831},{"id":"https://openalex.org/keywords/scale","display_name":"Scale (ratio)","score":0.5681287050247192},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5175963640213013},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.4831914007663727},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.3526619076728821},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.34892112016677856},{"id":"https://openalex.org/keywords/geography","display_name":"Geography","score":0.18232852220535278},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.11721068620681763},{"id":"https://openalex.org/keywords/cartography","display_name":"Cartography","score":0.11003854870796204}],"concepts":[{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.5889937281608582},{"id":"https://openalex.org/C18949551","wikidata":"https://www.wikidata.org/wiki/Q740578","display_name":"Sequence assembly","level":5,"score":0.5769472718238831},{"id":"https://openalex.org/C2778755073","wikidata":"https://www.wikidata.org/wiki/Q10858537","display_name":"Scale (ratio)","level":2,"score":0.5681287050247192},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5175963640213013},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4831914007663727},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3526619076728821},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.34892112016677856},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.18232852220535278},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.11721068620681763},{"id":"https://openalex.org/C58640448","wikidata":"https://www.wikidata.org/wiki/Q42515","display_name":"Cartography","level":1,"score":0.11003854870796204},{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.0},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btab005","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab005","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/37/12/1644/39119213/btab005.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:33471088","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/33471088","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:8289375","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8289375","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btab005","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab005","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/37/12/1644/39119213/btab005.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.5400000214576721,"display_name":"Partnerships for the goals","id":"https://metadata.un.org/sdg/17"}],"awards":[{"id":"https://openalex.org/G2294096858","display_name":null,"funder_award_id":"POIR.04.02.00-30-A004/16","funder_id":"https://openalex.org/F4320335322","funder_display_name":"European Regional Development Fund"}],"funders":[{"id":"https://openalex.org/F4320326815","display_name":"Infrastruktura PL-Grid","ror":null},{"id":"https://openalex.org/F4320335322","display_name":"European Regional Development Fund","ror":"https://ror.org/00k4n6c32"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3124747858.pdf","grobid_xml":"https://content.openalex.org/works/W3124747858.grobid-xml"},"referenced_works_count":29,"referenced_works":["https://openalex.org/W1493192698","https://openalex.org/W1635391495","https://openalex.org/W1984236772","https://openalex.org/W2014099509","https://openalex.org/W2022910024","https://openalex.org/W2034031757","https://openalex.org/W2074332603","https://openalex.org/W2102532874","https://openalex.org/W2105191441","https://openalex.org/W2107772251","https://openalex.org/W2113679889","https://openalex.org/W2115501618","https://openalex.org/W2120902911","https://openalex.org/W2127151197","https://openalex.org/W2129933858","https://openalex.org/W2136651963","https://openalex.org/W2146858470","https://openalex.org/W2158521043","https://openalex.org/W2160969485","https://openalex.org/W2410251856","https://openalex.org/W2419574648","https://openalex.org/W2462490406","https://openalex.org/W2469251889","https://openalex.org/W2763456665","https://openalex.org/W2885406561","https://openalex.org/W2887480761","https://openalex.org/W2895918907","https://openalex.org/W2941072767","https://openalex.org/W2949098970"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2086525401","https://openalex.org/W2006735166","https://openalex.org/W2794386548","https://openalex.org/W4381279187","https://openalex.org/W1992950355","https://openalex.org/W2013063066","https://openalex.org/W1841715584","https://openalex.org/W2766401759","https://openalex.org/W3134563641"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":1}],"updated_date":"2026-04-21T08:09:41.155169","created_date":"2021-02-01T00:00:00"}
