{"id":"https://openalex.org/W3098529469","doi":"https://doi.org/10.1093/bioinformatics/btaa959","title":"HRIBO: high-throughput analysis of bacterial ribosome profiling data","display_name":"HRIBO: high-throughput analysis of bacterial ribosome profiling data","publication_year":2020,"publication_date":"2020-11-03","ids":{"openalex":"https://openalex.org/W3098529469","doi":"https://doi.org/10.1093/bioinformatics/btaa959","mag":"3098529469","pmid":"https://pubmed.ncbi.nlm.nih.gov/33175953"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btaa959","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa959","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btaa959/38893770/btaa959.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btaa959/38893770/btaa959.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5083024895","display_name":"Rick Gelhausen","orcid":"https://orcid.org/0000-0003-4161-4394"},"institutions":[{"id":"https://openalex.org/I161046081","display_name":"University of Freiburg","ror":"https://ror.org/0245cg223","country_code":"DE","type":"education","lineage":["https://openalex.org/I161046081"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Rick Gelhausen","raw_affiliation_strings":["Bioinformatics Group, Department of Computer Science, University of Freiburg , 79110 Freiburg, Germany"],"affiliations":[{"raw_affiliation_string":"Bioinformatics Group, Department of Computer Science, University of Freiburg , 79110 Freiburg, Germany","institution_ids":["https://openalex.org/I161046081"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088468645","display_name":"Sarah L. Svensson","orcid":"https://orcid.org/0000-0002-3183-6084"},"institutions":[{"id":"https://openalex.org/I25974101","display_name":"University of W\u00fcrzburg","ror":"https://ror.org/00fbnyb24","country_code":"DE","type":"education","lineage":["https://openalex.org/I25974101"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Sarah L Svensson","raw_affiliation_strings":["Chair of Molecular Infection Biology II, Institute of Molecular Infection Biology (IMIB), University of W\u00fcrzburg , 97080 W\u00fcrzburg, Germany"],"affiliations":[{"raw_affiliation_string":"Chair of Molecular Infection Biology II, Institute of Molecular Infection Biology (IMIB), University of W\u00fcrzburg , 97080 W\u00fcrzburg, Germany","institution_ids":["https://openalex.org/I25974101"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5069493336","display_name":"Kathrin Froschauer","orcid":"https://orcid.org/0000-0001-5288-4440"},"institutions":[{"id":"https://openalex.org/I25974101","display_name":"University of W\u00fcrzburg","ror":"https://ror.org/00fbnyb24","country_code":"DE","type":"education","lineage":["https://openalex.org/I25974101"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Kathrin Froschauer","raw_affiliation_strings":["Chair of Molecular Infection Biology II, Institute of Molecular Infection Biology (IMIB), University of W\u00fcrzburg , 97080 W\u00fcrzburg, Germany"],"affiliations":[{"raw_affiliation_string":"Chair of Molecular Infection Biology II, Institute of Molecular Infection Biology (IMIB), University of W\u00fcrzburg , 97080 W\u00fcrzburg, Germany","institution_ids":["https://openalex.org/I25974101"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5029682281","display_name":"Florian Heyl","orcid":"https://orcid.org/0000-0002-3651-5685"},"institutions":[{"id":"https://openalex.org/I161046081","display_name":"University of Freiburg","ror":"https://ror.org/0245cg223","country_code":"DE","type":"education","lineage":["https://openalex.org/I161046081"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Florian Heyl","raw_affiliation_strings":["Bioinformatics Group, Department of Computer Science, University of Freiburg , 79110 Freiburg, Germany"],"affiliations":[{"raw_affiliation_string":"Bioinformatics Group, Department of Computer Science, University of Freiburg , 79110 Freiburg, Germany","institution_ids":["https://openalex.org/I161046081"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5080248404","display_name":"Lydia Hadjeras","orcid":"https://orcid.org/0000-0003-4645-8044"},"institutions":[{"id":"https://openalex.org/I25974101","display_name":"University of W\u00fcrzburg","ror":"https://ror.org/00fbnyb24","country_code":"DE","type":"education","lineage":["https://openalex.org/I25974101"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Lydia Hadjeras","raw_affiliation_strings":["Chair of Molecular Infection Biology II, Institute of Molecular Infection Biology (IMIB), University of W\u00fcrzburg , 97080 W\u00fcrzburg, Germany"],"affiliations":[{"raw_affiliation_string":"Chair of Molecular Infection Biology II, Institute of Molecular Infection Biology (IMIB), University of W\u00fcrzburg , 97080 W\u00fcrzburg, Germany","institution_ids":["https://openalex.org/I25974101"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5048266578","display_name":"Cynthia M. Sharma","orcid":"https://orcid.org/0000-0002-2321-9705"},"institutions":[{"id":"https://openalex.org/I25974101","display_name":"University of W\u00fcrzburg","ror":"https://ror.org/00fbnyb24","country_code":"DE","type":"education","lineage":["https://openalex.org/I25974101"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Cynthia M Sharma","raw_affiliation_strings":["Chair of Molecular Infection Biology II, Institute of Molecular Infection Biology (IMIB), University of W\u00fcrzburg , 97080 W\u00fcrzburg, Germany"],"affiliations":[{"raw_affiliation_string":"Chair of Molecular Infection Biology II, Institute of Molecular Infection Biology (IMIB), University of W\u00fcrzburg , 97080 W\u00fcrzburg, Germany","institution_ids":["https://openalex.org/I25974101"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063976174","display_name":"Florian Eggenhofer","orcid":"https://orcid.org/0000-0001-9564-7525"},"institutions":[{"id":"https://openalex.org/I161046081","display_name":"University of Freiburg","ror":"https://ror.org/0245cg223","country_code":"DE","type":"education","lineage":["https://openalex.org/I161046081"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Florian Eggenhofer","raw_affiliation_strings":["Bioinformatics Group, Department of Computer Science, University of Freiburg , 79110 Freiburg, Germany"],"affiliations":[{"raw_affiliation_string":"Bioinformatics Group, Department of Computer Science, University of Freiburg , 79110 Freiburg, Germany","institution_ids":["https://openalex.org/I161046081"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5017672883","display_name":"Rolf Backofen","orcid":"https://orcid.org/0000-0001-8231-3323"},"institutions":[{"id":"https://openalex.org/I161046081","display_name":"University of Freiburg","ror":"https://ror.org/0245cg223","country_code":"DE","type":"education","lineage":["https://openalex.org/I161046081"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Rolf Backofen","raw_affiliation_strings":["Bioinformatics Group, Department of Computer Science, University of Freiburg , 79110 Freiburg, Germany","Signalling Research Centres BIOSS and CIBSS, University of Freiburg , 79104 Freiburg, Germany"],"affiliations":[{"raw_affiliation_string":"Bioinformatics Group, Department of Computer Science, University of Freiburg , 79110 Freiburg, Germany","institution_ids":["https://openalex.org/I161046081"]},{"raw_affiliation_string":"Signalling Research Centres BIOSS and CIBSS, University of Freiburg , 79104 Freiburg, Germany","institution_ids":["https://openalex.org/I161046081"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5017672883","https://openalex.org/A5083024895"],"corresponding_institution_ids":["https://openalex.org/I161046081"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":1.0032,"has_fulltext":false,"cited_by_count":18,"citation_normalized_percentile":{"value":0.75407268,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"37","issue":"14","first_page":"2061","last_page":"2063"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9975000023841858,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/ribosome-profiling","display_name":"Ribosome profiling","score":0.7439019680023193},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.698120653629303},{"id":"https://openalex.org/keywords/orfs","display_name":"ORFS","score":0.6841455101966858},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.6433511972427368},{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.6346348524093628},{"id":"https://openalex.org/keywords/mit-license","display_name":"MIT License","score":0.6276603937149048},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5899032354354858},{"id":"https://openalex.org/keywords/profiling","display_name":"Profiling (computer programming)","score":0.5633784532546997},{"id":"https://openalex.org/keywords/ribosome","display_name":"Ribosome","score":0.39199402928352356},{"id":"https://openalex.org/keywords/open-reading-frame","display_name":"Open reading frame","score":0.36918359994888306},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3320575952529907},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3049588203430176},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.24621763825416565},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.1898210048675537},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.18507659435272217},{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.16361621022224426},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.11196878552436829},{"id":"https://openalex.org/keywords/peptide-sequence","display_name":"Peptide sequence","score":0.1095665693283081},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.10725224018096924},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.08255010843276978}],"concepts":[{"id":"https://openalex.org/C182325514","wikidata":"https://www.wikidata.org/wiki/Q7322425","display_name":"Ribosome profiling","level":5,"score":0.7439019680023193},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.698120653629303},{"id":"https://openalex.org/C2780530800","wikidata":"https://www.wikidata.org/wiki/Q7072921","display_name":"ORFS","level":5,"score":0.6841455101966858},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.6433511972427368},{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.6346348524093628},{"id":"https://openalex.org/C174183944","wikidata":"https://www.wikidata.org/wiki/Q334661","display_name":"MIT License","level":3,"score":0.6276603937149048},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5899032354354858},{"id":"https://openalex.org/C187191949","wikidata":"https://www.wikidata.org/wiki/Q1138496","display_name":"Profiling (computer programming)","level":2,"score":0.5633784532546997},{"id":"https://openalex.org/C88478588","wikidata":"https://www.wikidata.org/wiki/Q42244","display_name":"Ribosome","level":4,"score":0.39199402928352356},{"id":"https://openalex.org/C47289529","wikidata":"https://www.wikidata.org/wiki/Q908550","display_name":"Open reading frame","level":4,"score":0.36918359994888306},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3320575952529907},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3049588203430176},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.24621763825416565},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.1898210048675537},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.18507659435272217},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.16361621022224426},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.11196878552436829},{"id":"https://openalex.org/C167625842","wikidata":"https://www.wikidata.org/wiki/Q899763","display_name":"Peptide sequence","level":3,"score":0.1095665693283081},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.10725224018096924},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.08255010843276978}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D006736","descriptor_name":"Horses","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006736","descriptor_name":"Horses","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006736","descriptor_name":"Horses","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012270","descriptor_name":"Ribosomes","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D012270","descriptor_name":"Ribosomes","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D012270","descriptor_name":"Ribosomes","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D012270","descriptor_name":"Ribosomes","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D012270","descriptor_name":"Ribosomes","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D012270","descriptor_name":"Ribosomes","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D012335","descriptor_name":"RNA, Ribosomal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012335","descriptor_name":"RNA, Ribosomal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012335","descriptor_name":"RNA, Ribosomal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014176","descriptor_name":"Protein Biosynthesis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014176","descriptor_name":"Protein Biosynthesis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014176","descriptor_name":"Protein Biosynthesis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016366","descriptor_name":"Open Reading Frames","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016366","descriptor_name":"Open Reading Frames","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016366","descriptor_name":"Open Reading Frames","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btaa959","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa959","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btaa959/38893770/btaa959.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:33175953","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/33175953","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:opus.bibliothek.uni-wuerzburg.de:35117","is_oa":true,"landing_page_url":"https://opus.bibliothek.uni-wuerzburg.de/frontdoor/index/index/docId/35117","pdf_url":null,"source":{"id":"https://openalex.org/S4306401635","display_name":"Online Publication Service of W\u00fcrzburg University (W\u00fcrzburg University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I25974101","host_organization_name":"University of W\u00fcrzburg","host_organization_lineage":["https://openalex.org/I25974101"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"doc-type:article"},{"id":"pmh:oai:pubmedcentral.nih.gov:8337001","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8337001","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btaa959","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa959","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btaa959/38893770/btaa959.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.49000000953674316,"id":"https://metadata.un.org/sdg/4","display_name":"Quality Education"}],"awards":[{"id":"https://openalex.org/G1856694890","display_name":null,"funder_award_id":"322977937","funder_id":"https://openalex.org/F4320308022","funder_display_name":"California Department of Fish and Game"},{"id":"https://openalex.org/G1880817319","display_name":null,"funder_award_id":"INST 37/935-1","funder_id":"https://openalex.org/F4320308022","funder_display_name":"California Department of Fish and Game"},{"id":"https://openalex.org/G2242721168","display_name":null,"funder_award_id":"SH580/7-1: Sh580/8-1","funder_id":"https://openalex.org/F4320308022","funder_display_name":"California Department of Fish and Game"},{"id":"https://openalex.org/G2925192693","display_name":null,"funder_award_id":"RNAProNet\u2014031L0164B","funder_id":"https://openalex.org/F4320321114","funder_display_name":"Bundesministerium f\u00fcr Bildung und Forschung"},{"id":"https://openalex.org/G3026006860","display_name":null,"funder_award_id":"SPP2002","funder_id":"https://openalex.org/F4320308022","funder_display_name":"California Department of Fish and Game"},{"id":"https://openalex.org/G7626669742","display_name":null,"funder_award_id":"390939984","funder_id":"https://openalex.org/F4320308022","funder_display_name":"California Department of Fish and Game"},{"id":"https://openalex.org/G873442224","display_name":null,"funder_award_id":"SCHM 2663/3","funder_id":"https://openalex.org/F4320308022","funder_display_name":"California Department of Fish and Game"},{"id":"https://openalex.org/G8874233666","display_name":null,"funder_award_id":"BA 2168/21-1 SPP 2002","funder_id":"https://openalex.org/F4320308022","funder_display_name":"California Department of Fish and Game"},{"id":"https://openalex.org/G8874824301","display_name":null,"funder_award_id":"GRK2344 2017","funder_id":"https://openalex.org/F4320308022","funder_display_name":"California Department of Fish and Game"}],"funders":[{"id":"https://openalex.org/F4320308022","display_name":"California Department of Fish and Game","ror":"https://ror.org/02v6w2r95"},{"id":"https://openalex.org/F4320321114","display_name":"Bundesministerium f\u00fcr Bildung und Forschung","ror":"https://ror.org/04pz7b180"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3098529469.pdf","grobid_xml":"https://content.openalex.org/works/W3098529469.grobid-xml"},"referenced_works_count":31,"referenced_works":["https://openalex.org/W2036897871","https://openalex.org/W2079517684","https://openalex.org/W2102496723","https://openalex.org/W2108234281","https://openalex.org/W2110417468","https://openalex.org/W2121350645","https://openalex.org/W2138207763","https://openalex.org/W2139898631","https://openalex.org/W2175422544","https://openalex.org/W2262417550","https://openalex.org/W2266589141","https://openalex.org/W2432815617","https://openalex.org/W2585531293","https://openalex.org/W2747614225","https://openalex.org/W2765745983","https://openalex.org/W2768325741","https://openalex.org/W2908521178","https://openalex.org/W2912721696","https://openalex.org/W2914763394","https://openalex.org/W2942901128","https://openalex.org/W2949435868","https://openalex.org/W2950120624","https://openalex.org/W3004308898","https://openalex.org/W3015217127","https://openalex.org/W3023823200","https://openalex.org/W3037676786","https://openalex.org/W3046357967","https://openalex.org/W3099310641","https://openalex.org/W3106988153","https://openalex.org/W3116851193","https://openalex.org/W6678006650"],"related_works":["https://openalex.org/W1978801575","https://openalex.org/W2029252138","https://openalex.org/W4306784270","https://openalex.org/W2101899141","https://openalex.org/W3031046715","https://openalex.org/W2017335389","https://openalex.org/W2358544099","https://openalex.org/W2072439611","https://openalex.org/W3148570048","https://openalex.org/W3190998772"],"abstract_inverted_index":{"HRIBO":[0],"is":[1],"a":[2],"free":[3],"and":[4],"open":[5],"source":[6],"project":[7],"available":[8],"under":[9],"the":[10],"GPL-3":[11],"license":[12],"at:":[13],"https://github.com/RickGelhausen/HRIBO.":[14]},"counts_by_year":[{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":5},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":4},{"year":2020,"cited_by_count":1}],"updated_date":"2026-04-21T08:09:41.155169","created_date":"2025-10-10T00:00:00"}
