{"id":"https://openalex.org/W3094646456","doi":"https://doi.org/10.1093/bioinformatics/btaa938","title":"MetaTX: deciphering the distribution of mRNA-related features in the presence of isoform ambiguity, with applications in epitranscriptome analysis","display_name":"MetaTX: deciphering the distribution of mRNA-related features in the presence of isoform ambiguity, with applications in epitranscriptome analysis","publication_year":2020,"publication_date":"2020-10-24","ids":{"openalex":"https://openalex.org/W3094646456","doi":"https://doi.org/10.1093/bioinformatics/btaa938","mag":"3094646456","pmid":"https://pubmed.ncbi.nlm.nih.gov/33135046"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btaa938","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa938","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100371957","display_name":"Yue Wang","orcid":"https://orcid.org/0000-0001-6271-6547"},"institutions":[{"id":"https://openalex.org/I146655781","display_name":"University of Liverpool","ror":"https://ror.org/04xs57h96","country_code":"GB","type":"education","lineage":["https://openalex.org/I146655781"]},{"id":"https://openalex.org/I69356397","display_name":"Xi\u2019an Jiaotong-Liverpool University","ror":"https://ror.org/03zmrmn05","country_code":"CN","type":"education","lineage":["https://openalex.org/I69356397"]}],"countries":["CN","GB"],"is_corresponding":false,"raw_author_name":"Yue Wang","raw_affiliation_strings":["Department of Computer Science, University of Liverpool , Liverpool L69 7ZB, UK","Department of Mathematical Sciences, Xi\u2019an Jiaotong-Liverpool University , Suzhou, Jiangsu 215123, China"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Liverpool , Liverpool L69 7ZB, UK","institution_ids":["https://openalex.org/I146655781"]},{"raw_affiliation_string":"Department of Mathematical Sciences, Xi\u2019an Jiaotong-Liverpool University , Suzhou, Jiangsu 215123, China","institution_ids":["https://openalex.org/I69356397"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090892714","display_name":"Kunqi Chen","orcid":"https://orcid.org/0000-0002-6025-8957"},"institutions":[{"id":"https://openalex.org/I146655781","display_name":"University of Liverpool","ror":"https://ror.org/04xs57h96","country_code":"GB","type":"education","lineage":["https://openalex.org/I146655781"]},{"id":"https://openalex.org/I69356397","display_name":"Xi\u2019an Jiaotong-Liverpool University","ror":"https://ror.org/03zmrmn05","country_code":"CN","type":"education","lineage":["https://openalex.org/I69356397"]}],"countries":["CN","GB"],"is_corresponding":false,"raw_author_name":"Kunqi Chen","raw_affiliation_strings":["Department of Biological Sciences, Xi\u2019an Jiaotong-Liverpool University , Suzhou, Jiangsu 215123, China","Institute of Ageing & Chronic Disease, University of Liverpool , Liverpool L69 7ZB, UK"],"affiliations":[{"raw_affiliation_string":"Department of Biological Sciences, Xi\u2019an Jiaotong-Liverpool University , Suzhou, Jiangsu 215123, China","institution_ids":["https://openalex.org/I69356397"]},{"raw_affiliation_string":"Institute of Ageing & Chronic Disease, University of Liverpool , Liverpool L69 7ZB, UK","institution_ids":["https://openalex.org/I146655781"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062284353","display_name":"Zhen Wei","orcid":"https://orcid.org/0000-0002-1614-9614"},"institutions":[{"id":"https://openalex.org/I146655781","display_name":"University of Liverpool","ror":"https://ror.org/04xs57h96","country_code":"GB","type":"education","lineage":["https://openalex.org/I146655781"]},{"id":"https://openalex.org/I69356397","display_name":"Xi\u2019an Jiaotong-Liverpool University","ror":"https://ror.org/03zmrmn05","country_code":"CN","type":"education","lineage":["https://openalex.org/I69356397"]}],"countries":["CN","GB"],"is_corresponding":false,"raw_author_name":"Zhen Wei","raw_affiliation_strings":["Department of Biological Sciences, Xi\u2019an Jiaotong-Liverpool University , Suzhou, Jiangsu 215123, China","Institute of Ageing & Chronic Disease, University of Liverpool , Liverpool L69 7ZB, UK"],"affiliations":[{"raw_affiliation_string":"Department of Biological Sciences, Xi\u2019an Jiaotong-Liverpool University , Suzhou, Jiangsu 215123, China","institution_ids":["https://openalex.org/I69356397"]},{"raw_affiliation_string":"Institute of Ageing & Chronic Disease, University of Liverpool , Liverpool L69 7ZB, UK","institution_ids":["https://openalex.org/I146655781"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073606016","display_name":"Frans Coenen","orcid":"https://orcid.org/0000-0003-1026-6649"},"institutions":[{"id":"https://openalex.org/I146655781","display_name":"University of Liverpool","ror":"https://ror.org/04xs57h96","country_code":"GB","type":"education","lineage":["https://openalex.org/I146655781"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Frans Coenen","raw_affiliation_strings":["Department of Computer Science, University of Liverpool , Liverpool L69 7ZB, UK"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Liverpool , Liverpool L69 7ZB, UK","institution_ids":["https://openalex.org/I146655781"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5085156744","display_name":"Jionglong Su","orcid":"https://orcid.org/0000-0001-5360-6493"},"institutions":[{"id":"https://openalex.org/I69356397","display_name":"Xi\u2019an Jiaotong-Liverpool University","ror":"https://ror.org/03zmrmn05","country_code":"CN","type":"education","lineage":["https://openalex.org/I69356397"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jionglong Su","raw_affiliation_strings":["Department of Mathematical Sciences, Xi\u2019an Jiaotong-Liverpool University , Suzhou, Jiangsu 215123, China"],"affiliations":[{"raw_affiliation_string":"Department of Mathematical Sciences, Xi\u2019an Jiaotong-Liverpool University , Suzhou, Jiangsu 215123, China","institution_ids":["https://openalex.org/I69356397"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5062986831","display_name":"Jia Meng","orcid":"https://orcid.org/0000-0003-3455-205X"},"institutions":[{"id":"https://openalex.org/I146655781","display_name":"University of Liverpool","ror":"https://ror.org/04xs57h96","country_code":"GB","type":"education","lineage":["https://openalex.org/I146655781"]},{"id":"https://openalex.org/I69356397","display_name":"Xi\u2019an Jiaotong-Liverpool University","ror":"https://ror.org/03zmrmn05","country_code":"CN","type":"education","lineage":["https://openalex.org/I69356397"]}],"countries":["CN","GB"],"is_corresponding":true,"raw_author_name":"Jia Meng","raw_affiliation_strings":["AI University Research Centre, Xi\u2019an Jiaotong-Liverpool University , Suzhou, Jiangsu 215123, China","Department of Biological Sciences, Xi\u2019an Jiaotong-Liverpool University , Suzhou, Jiangsu 215123, China","Institute of Integrative Biology, University of Liverpool , Liverpool L69 7ZB, UK"],"affiliations":[{"raw_affiliation_string":"AI University Research Centre, Xi\u2019an Jiaotong-Liverpool University , Suzhou, Jiangsu 215123, China","institution_ids":["https://openalex.org/I69356397"]},{"raw_affiliation_string":"Department of Biological Sciences, Xi\u2019an Jiaotong-Liverpool University , Suzhou, Jiangsu 215123, China","institution_ids":["https://openalex.org/I69356397"]},{"raw_affiliation_string":"Institute of Integrative Biology, University of Liverpool , Liverpool L69 7ZB, UK","institution_ids":["https://openalex.org/I146655781"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5062986831"],"corresponding_institution_ids":["https://openalex.org/I146655781","https://openalex.org/I69356397"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.8343,"has_fulltext":false,"cited_by_count":18,"citation_normalized_percentile":{"value":0.71949788,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":93,"max":98},"biblio":{"volume":"37","issue":"9","first_page":"1285","last_page":"1291"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9979000091552734,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.996999979019165,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/ambiguity","display_name":"Ambiguity","score":0.8114199042320251},{"id":"https://openalex.org/keywords/gene-isoform","display_name":"Gene isoform","score":0.6706240773200989},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.6085395216941833},{"id":"https://openalex.org/keywords/messenger-rna","display_name":"Messenger RNA","score":0.6080518960952759},{"id":"https://openalex.org/keywords/focus","display_name":"Focus (optics)","score":0.555651843547821},{"id":"https://openalex.org/keywords/distribution","display_name":"Distribution (mathematics)","score":0.5482327938079834},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5452951788902283},{"id":"https://openalex.org/keywords/relevance","display_name":"Relevance (law)","score":0.5123916268348694},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.42055729031562805},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3824416399002075},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.20203885436058044},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.163485586643219},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.12691271305084229},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.07674986124038696}],"concepts":[{"id":"https://openalex.org/C2780522230","wikidata":"https://www.wikidata.org/wiki/Q1140419","display_name":"Ambiguity","level":2,"score":0.8114199042320251},{"id":"https://openalex.org/C53345823","wikidata":"https://www.wikidata.org/wiki/Q5531554","display_name":"Gene isoform","level":3,"score":0.6706240773200989},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6085395216941833},{"id":"https://openalex.org/C105580179","wikidata":"https://www.wikidata.org/wiki/Q188928","display_name":"Messenger RNA","level":3,"score":0.6080518960952759},{"id":"https://openalex.org/C192209626","wikidata":"https://www.wikidata.org/wiki/Q190909","display_name":"Focus (optics)","level":2,"score":0.555651843547821},{"id":"https://openalex.org/C110121322","wikidata":"https://www.wikidata.org/wiki/Q865811","display_name":"Distribution (mathematics)","level":2,"score":0.5482327938079834},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5452951788902283},{"id":"https://openalex.org/C158154518","wikidata":"https://www.wikidata.org/wiki/Q7310970","display_name":"Relevance (law)","level":2,"score":0.5123916268348694},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.42055729031562805},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3824416399002075},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.20203885436058044},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.163485586643219},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.12691271305084229},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.07674986124038696},{"id":"https://openalex.org/C120665830","wikidata":"https://www.wikidata.org/wiki/Q14620","display_name":"Optics","level":1,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012333","descriptor_name":"RNA, Messenger","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012333","descriptor_name":"RNA, Messenger","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012333","descriptor_name":"RNA, Messenger","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020033","descriptor_name":"Protein Isoforms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D020033","descriptor_name":"Protein Isoforms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D020033","descriptor_name":"Protein Isoforms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btaa938","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa938","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:33135046","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/33135046","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.4399999976158142,"id":"https://metadata.un.org/sdg/17","display_name":"Partnerships for the goals"}],"awards":[{"id":"https://openalex.org/G5709834030","display_name":null,"funder_award_id":"31671373","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":30,"referenced_works":["https://openalex.org/W776567260","https://openalex.org/W1810028515","https://openalex.org/W1941339056","https://openalex.org/W1981629946","https://openalex.org/W2002458471","https://openalex.org/W2009308529","https://openalex.org/W2011131953","https://openalex.org/W2015416439","https://openalex.org/W2049633694","https://openalex.org/W2054101905","https://openalex.org/W2058767191","https://openalex.org/W2065847836","https://openalex.org/W2078964320","https://openalex.org/W2102872651","https://openalex.org/W2111353388","https://openalex.org/W2123460634","https://openalex.org/W2126165721","https://openalex.org/W2131478115","https://openalex.org/W2180404227","https://openalex.org/W2345013090","https://openalex.org/W2407697759","https://openalex.org/W2515176360","https://openalex.org/W2519744449","https://openalex.org/W2562211106","https://openalex.org/W2584435361","https://openalex.org/W2604637348","https://openalex.org/W2616848081","https://openalex.org/W2767731367","https://openalex.org/W2947993870","https://openalex.org/W6704445400"],"related_works":["https://openalex.org/W2353179089","https://openalex.org/W1540936366","https://openalex.org/W2923538289","https://openalex.org/W2353125546","https://openalex.org/W2079625624","https://openalex.org/W2470643824","https://openalex.org/W4400595174","https://openalex.org/W2349635380","https://openalex.org/W4353089801","https://openalex.org/W2353819554"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2025,"cited_by_count":5},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":6},{"year":2021,"cited_by_count":2}],"updated_date":"2026-03-27T05:58:40.876381","created_date":"2025-10-10T00:00:00"}
