{"id":"https://openalex.org/W3096485033","doi":"https://doi.org/10.1093/bioinformatics/btaa934","title":"Protein residues determining interaction specificity in\u00a0paralogous families","display_name":"Protein residues determining interaction specificity in\u00a0paralogous families","publication_year":2020,"publication_date":"2020-10-22","ids":{"openalex":"https://openalex.org/W3096485033","doi":"https://doi.org/10.1093/bioinformatics/btaa934","mag":"3096485033","pmid":"https://pubmed.ncbi.nlm.nih.gov/33135068"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btaa934","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa934","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/37/8/1076/38156350/btaa934.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/37/8/1076/38156350/btaa934.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5046042631","display_name":"Borja Pitarch","orcid":"https://orcid.org/0000-0002-5220-8810"},"institutions":[{"id":"https://openalex.org/I4210104776","display_name":"Centro Nacional de Biotecnolog\u00eda","ror":"https://ror.org/015w4v032","country_code":"ES","type":"facility","lineage":["https://openalex.org/I134820265","https://openalex.org/I4210104776"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Borja Pitarch","raw_affiliation_strings":["Computational Systems Biology Group, Systems Biology Department, National Centre for Biotechnology (CNB-CSIC) , 28049 Madrid, Spain"],"affiliations":[{"raw_affiliation_string":"Computational Systems Biology Group, Systems Biology Department, National Centre for Biotechnology (CNB-CSIC) , 28049 Madrid, Spain","institution_ids":["https://openalex.org/I4210104776"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5065049632","display_name":"Juan A. G. Ranea","orcid":"https://orcid.org/0000-0003-0327-1837"},"institutions":[{"id":"https://openalex.org/I82767444","display_name":"Universidad de M\u00e1laga","ror":"https://ror.org/036b2ww28","country_code":"ES","type":"education","lineage":["https://openalex.org/I82767444"]},{"id":"https://openalex.org/I4210115082","display_name":"Centro de Investigaci\u00f3n Biom\u00e9dica en Red","ror":"https://ror.org/02g87qh62","country_code":"ES","type":"facility","lineage":["https://openalex.org/I2801357902","https://openalex.org/I4210115082","https://openalex.org/I4387152914"]},{"id":"https://openalex.org/I2801357902","display_name":"Instituto de Salud Carlos III","ror":"https://ror.org/00ca2c886","country_code":"ES","type":"funder","lineage":["https://openalex.org/I2801357902","https://openalex.org/I4387152914"]},{"id":"https://openalex.org/I4210164724","display_name":"Instituto de Investigaci\u00f3n Biom\u00e9dica de M\u00e1laga","ror":"https://ror.org/05n3asa33","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210164724"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Juan A G Ranea","raw_affiliation_strings":["CIBER de Enfermedades Raras, Instituto de Salud Carlos III , Madrid, Spain","Department of Molecular Biology and Biochemistry, University of Malaga , Malaga 29071, Spain","Institute of Biomedical Research in Malaga (IBIMA) , Malaga, Spain"],"affiliations":[{"raw_affiliation_string":"CIBER de Enfermedades Raras, Instituto de Salud Carlos III , Madrid, Spain","institution_ids":["https://openalex.org/I4210115082","https://openalex.org/I2801357902"]},{"raw_affiliation_string":"Department of Molecular Biology and Biochemistry, University of Malaga , Malaga 29071, Spain","institution_ids":["https://openalex.org/I82767444"]},{"raw_affiliation_string":"Institute of Biomedical Research in Malaga (IBIMA) , Malaga, Spain","institution_ids":["https://openalex.org/I4210164724"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5062274087","display_name":"Florencio Pazos","orcid":"https://orcid.org/0000-0002-2646-6226"},"institutions":[{"id":"https://openalex.org/I4210104776","display_name":"Centro Nacional de Biotecnolog\u00eda","ror":"https://ror.org/015w4v032","country_code":"ES","type":"facility","lineage":["https://openalex.org/I134820265","https://openalex.org/I4210104776"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"Florencio Pazos","raw_affiliation_strings":["Computational Systems Biology Group, Systems Biology Department, National Centre for Biotechnology (CNB-CSIC) , 28049 Madrid, Spain"],"affiliations":[{"raw_affiliation_string":"Computational Systems Biology Group, Systems Biology Department, National Centre for Biotechnology (CNB-CSIC) , 28049 Madrid, Spain","institution_ids":["https://openalex.org/I4210104776"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5062274087"],"corresponding_institution_ids":["https://openalex.org/I4210104776"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.4143,"has_fulltext":false,"cited_by_count":8,"citation_normalized_percentile":{"value":0.60424642,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":97},"biblio":{"volume":"37","issue":"8","first_page":"1076","last_page":"1082"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9980000257492065,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9980000257492065,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9932000041007996,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9908999800682068,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/interactome","display_name":"Interactome","score":0.9426292777061462},{"id":"https://openalex.org/keywords/pairwise-comparison","display_name":"Pairwise comparison","score":0.7625604867935181},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.6183576583862305},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.6007246375083923},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5519654750823975},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.5186854600906372},{"id":"https://openalex.org/keywords/multiple-sequence-alignment","display_name":"Multiple sequence alignment","score":0.43264758586883545},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.41002339124679565},{"id":"https://openalex.org/keywords/sequence-alignment","display_name":"Sequence alignment","score":0.3710157871246338},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.35192596912384033},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.33727964758872986},{"id":"https://openalex.org/keywords/peptide-sequence","display_name":"Peptide sequence","score":0.3164839744567871},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.23170673847198486},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.20803305506706238},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.06917890906333923}],"concepts":[{"id":"https://openalex.org/C9760119","wikidata":"https://www.wikidata.org/wiki/Q841382","display_name":"Interactome","level":3,"score":0.9426292777061462},{"id":"https://openalex.org/C184898388","wikidata":"https://www.wikidata.org/wiki/Q1435712","display_name":"Pairwise comparison","level":2,"score":0.7625604867935181},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.6183576583862305},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6007246375083923},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5519654750823975},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.5186854600906372},{"id":"https://openalex.org/C88031987","wikidata":"https://www.wikidata.org/wiki/Q1377767","display_name":"Multiple sequence alignment","level":5,"score":0.43264758586883545},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.41002339124679565},{"id":"https://openalex.org/C45484198","wikidata":"https://www.wikidata.org/wiki/Q827246","display_name":"Sequence alignment","level":4,"score":0.3710157871246338},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.35192596912384033},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.33727964758872986},{"id":"https://openalex.org/C167625842","wikidata":"https://www.wikidata.org/wiki/Q899763","display_name":"Peptide sequence","level":3,"score":0.3164839744567871},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.23170673847198486},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.20803305506706238},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.06917890906333923},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btaa934","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa934","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/37/8/1076/38156350/btaa934.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:33135068","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/33135068","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btaa934","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa934","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/37/8/1076/38156350/btaa934.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/15","display_name":"Life in Land","score":0.6299999952316284}],"awards":[{"id":"https://openalex.org/G7625767729","display_name":null,"funder_award_id":"UMA18-FEDERJA-102","funder_id":"https://openalex.org/F4320335322","funder_display_name":"European Regional Development Fund"}],"funders":[{"id":"https://openalex.org/F4320310214","display_name":"Fundaci\u00f3n Ram\u00f3n Areces","ror":"https://ror.org/04ra91131"},{"id":"https://openalex.org/F4320334923","display_name":"Instituto de Salud Carlos III","ror":"https://ror.org/00ca2c886"},{"id":"https://openalex.org/F4320335322","display_name":"European Regional Development Fund","ror":"https://ror.org/00k4n6c32"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3096485033.pdf","grobid_xml":"https://content.openalex.org/works/W3096485033.grobid-xml"},"referenced_works_count":37,"referenced_works":["https://openalex.org/W1831325397","https://openalex.org/W1852206334","https://openalex.org/W1965379872","https://openalex.org/W1965582988","https://openalex.org/W1967638691","https://openalex.org/W1969733451","https://openalex.org/W1974944535","https://openalex.org/W1975449945","https://openalex.org/W1990200500","https://openalex.org/W1994528559","https://openalex.org/W2022472106","https://openalex.org/W2045787860","https://openalex.org/W2062533676","https://openalex.org/W2065089764","https://openalex.org/W2065921821","https://openalex.org/W2077135540","https://openalex.org/W2084821192","https://openalex.org/W2097698606","https://openalex.org/W2100009368","https://openalex.org/W2104601544","https://openalex.org/W2114306742","https://openalex.org/W2114886480","https://openalex.org/W2119488109","https://openalex.org/W2120829444","https://openalex.org/W2121714338","https://openalex.org/W2127322768","https://openalex.org/W2154867574","https://openalex.org/W2155469822","https://openalex.org/W2158698691","https://openalex.org/W2158714788","https://openalex.org/W2243146974","https://openalex.org/W2432517183","https://openalex.org/W2528040086","https://openalex.org/W2536408153","https://openalex.org/W2950734189","https://openalex.org/W2977132082","https://openalex.org/W2981264952"],"related_works":["https://openalex.org/W2194132979","https://openalex.org/W4244299128","https://openalex.org/W2018356890","https://openalex.org/W2051969447","https://openalex.org/W2111937814","https://openalex.org/W2162923930","https://openalex.org/W2113213844","https://openalex.org/W2079145549","https://openalex.org/W4389053053","https://openalex.org/W2903170547"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":1},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":3}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
