{"id":"https://openalex.org/W3097592152","doi":"https://doi.org/10.1093/bioinformatics/btaa928","title":"BiasAway: command-line and web server to generate nucleotide composition-matched DNA background sequences","display_name":"BiasAway: command-line and web server to generate nucleotide composition-matched DNA background sequences","publication_year":2020,"publication_date":"2020-10-19","ids":{"openalex":"https://openalex.org/W3097592152","doi":"https://doi.org/10.1093/bioinformatics/btaa928","mag":"3097592152","pmid":"https://pubmed.ncbi.nlm.nih.gov/33135764"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btaa928","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa928","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/37/11/1607/38923889/btaa928.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/37/11/1607/38923889/btaa928.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5050509301","display_name":"Aziz Khan","orcid":null},"institutions":[{"id":"https://openalex.org/I184942183","display_name":"University of Oslo","ror":"https://ror.org/01xtthb56","country_code":"NO","type":"education","lineage":["https://openalex.org/I184942183"]},{"id":"https://openalex.org/I4390039303","display_name":"Stanford Cancer Institute","ror":"https://ror.org/014qe3j22","country_code":null,"type":"healthcare","lineage":["https://openalex.org/I4210137306","https://openalex.org/I4390039303","https://openalex.org/I97018004"]},{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["NO","US"],"is_corresponding":false,"raw_author_name":"Aziz Khan","raw_affiliation_strings":["Centre for Molecular Medicine Norway (NCMM), Nordic EMBL Partnership, University of Oslo , 0349 Oslo, Norway","Stanford University School of Medicine, Stanford Cancer Institute , Stanford, CA 94304, USA"],"affiliations":[{"raw_affiliation_string":"Centre for Molecular Medicine Norway (NCMM), Nordic EMBL Partnership, University of Oslo , 0349 Oslo, Norway","institution_ids":["https://openalex.org/I184942183"]},{"raw_affiliation_string":"Stanford University School of Medicine, Stanford Cancer Institute , Stanford, CA 94304, USA","institution_ids":["https://openalex.org/I97018004","https://openalex.org/I4390039303"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039324985","display_name":"Rafael Riudavets Puig","orcid":"https://orcid.org/0000-0002-2855-9952"},"institutions":[{"id":"https://openalex.org/I184942183","display_name":"University of Oslo","ror":"https://ror.org/01xtthb56","country_code":"NO","type":"education","lineage":["https://openalex.org/I184942183"]}],"countries":["NO"],"is_corresponding":false,"raw_author_name":"Rafael Riudavets Puig","raw_affiliation_strings":["Centre for Molecular Medicine Norway (NCMM), Nordic EMBL Partnership, University of Oslo , 0349 Oslo, Norway"],"affiliations":[{"raw_affiliation_string":"Centre for Molecular Medicine Norway (NCMM), Nordic EMBL Partnership, University of Oslo , 0349 Oslo, Norway","institution_ids":["https://openalex.org/I184942183"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089476816","display_name":"Paul Boddie","orcid":null},"institutions":[{"id":"https://openalex.org/I184942183","display_name":"University of Oslo","ror":"https://ror.org/01xtthb56","country_code":"NO","type":"education","lineage":["https://openalex.org/I184942183"]}],"countries":["NO"],"is_corresponding":false,"raw_author_name":"Paul Boddie","raw_affiliation_strings":["Centre for Molecular Medicine Norway (NCMM), Nordic EMBL Partnership, University of Oslo , 0349 Oslo, Norway"],"affiliations":[{"raw_affiliation_string":"Centre for Molecular Medicine Norway (NCMM), Nordic EMBL Partnership, University of Oslo , 0349 Oslo, Norway","institution_ids":["https://openalex.org/I184942183"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5087735169","display_name":"Anthony Mathelier","orcid":"https://orcid.org/0000-0001-5127-5459"},"institutions":[{"id":"https://openalex.org/I1281400175","display_name":"Oslo University Hospital","ror":"https://ror.org/00j9c2840","country_code":"NO","type":"healthcare","lineage":["https://openalex.org/I1281400175"]},{"id":"https://openalex.org/I184942183","display_name":"University of Oslo","ror":"https://ror.org/01xtthb56","country_code":"NO","type":"education","lineage":["https://openalex.org/I184942183"]}],"countries":["NO"],"is_corresponding":true,"raw_author_name":"Anthony Mathelier","raw_affiliation_strings":["Centre for Molecular Medicine Norway (NCMM), Nordic EMBL Partnership, University of Oslo , 0349 Oslo, Norway","Department of Medical Genetics, Oslo University Hospital , 0424 Oslo, Norway"],"affiliations":[{"raw_affiliation_string":"Centre for Molecular Medicine Norway (NCMM), Nordic EMBL Partnership, University of Oslo , 0349 Oslo, Norway","institution_ids":["https://openalex.org/I184942183"]},{"raw_affiliation_string":"Department of Medical Genetics, Oslo University Hospital , 0424 Oslo, Norway","institution_ids":["https://openalex.org/I1281400175"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5087735169"],"corresponding_institution_ids":["https://openalex.org/I1281400175","https://openalex.org/I184942183"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":2.4238,"has_fulltext":true,"cited_by_count":34,"citation_normalized_percentile":{"value":0.89914135,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"37","issue":"11","first_page":"1607","last_page":"1609"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9980000257492065,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9973999857902527,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6286605596542358},{"id":"https://openalex.org/keywords/composition","display_name":"Composition (language)","score":0.5871318578720093},{"id":"https://openalex.org/keywords/line","display_name":"Line (geometry)","score":0.49235284328460693},{"id":"https://openalex.org/keywords/dna","display_name":"DNA","score":0.4821483790874481},{"id":"https://openalex.org/keywords/nucleotide","display_name":"Nucleotide","score":0.465948224067688},{"id":"https://openalex.org/keywords/web-server","display_name":"Web server","score":0.41669023036956787},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3579781651496887},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.283735454082489},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.27526915073394775},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.27358973026275635},{"id":"https://openalex.org/keywords/the-internet","display_name":"The Internet","score":0.2181113362312317},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.13661885261535645},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.12709006667137146}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6286605596542358},{"id":"https://openalex.org/C40231798","wikidata":"https://www.wikidata.org/wiki/Q1333743","display_name":"Composition (language)","level":2,"score":0.5871318578720093},{"id":"https://openalex.org/C198352243","wikidata":"https://www.wikidata.org/wiki/Q37105","display_name":"Line (geometry)","level":2,"score":0.49235284328460693},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.4821483790874481},{"id":"https://openalex.org/C512185932","wikidata":"https://www.wikidata.org/wiki/Q28745","display_name":"Nucleotide","level":3,"score":0.465948224067688},{"id":"https://openalex.org/C11392498","wikidata":"https://www.wikidata.org/wiki/Q11288","display_name":"Web server","level":3,"score":0.41669023036956787},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3579781651496887},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.283735454082489},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.27526915073394775},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.27358973026275635},{"id":"https://openalex.org/C110875604","wikidata":"https://www.wikidata.org/wiki/Q75","display_name":"The Internet","level":2,"score":0.2181113362312317},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.13661885261535645},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.12709006667137146},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.0},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009711","descriptor_name":"Nucleotides","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009711","descriptor_name":"Nucleotides","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009711","descriptor_name":"Nucleotides","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btaa928","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa928","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/37/11/1607/38923889/btaa928.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:33135764","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/33135764","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:8275979","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8275979","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:www.duo.uio.no:10852/84045","is_oa":true,"landing_page_url":"http://urn.nb.no/URN:NBN:no-86765","pdf_url":null,"source":{"id":"https://openalex.org/S4306401717","display_name":"Duo Research Archive (University of Oslo)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I184942183","host_organization_name":"University of Oslo","host_organization_lineage":["https://openalex.org/I184942183"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"1367-4803","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btaa928","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa928","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/37/11/1607/38923889/btaa928.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1336288481","display_name":null,"funder_award_id":"197884","funder_id":"https://openalex.org/F4320310758","funder_display_name":"Kreftforeningen"},{"id":"https://openalex.org/G3541825562","display_name":null,"funder_award_id":"#187615","funder_id":"https://openalex.org/F4320323299","funder_display_name":"Norges Forskningsr\u00e5d"},{"id":"https://openalex.org/G3748656914","display_name":null,"funder_award_id":"Norway","funder_id":"https://openalex.org/F4320323299","funder_display_name":"Norges Forskningsr\u00e5d"},{"id":"https://openalex.org/G5214782616","display_name":null,"funder_award_id":"288404","funder_id":"https://openalex.org/F4320323299","funder_display_name":"Norges Forskningsr\u00e5d"},{"id":"https://openalex.org/G6970925884","display_name":null,"funder_award_id":"187615","funder_id":"https://openalex.org/F4320323299","funder_display_name":"Norges Forskningsr\u00e5d"},{"id":"https://openalex.org/G8026655011","display_name":null,"funder_award_id":"187615","funder_id":"https://openalex.org/F4320323260","funder_display_name":"Universitetet i Oslo"}],"funders":[{"id":"https://openalex.org/F4320310758","display_name":"Kreftforeningen","ror":"https://ror.org/01925vb10"},{"id":"https://openalex.org/F4320323260","display_name":"Universitetet i Oslo","ror":"https://ror.org/01xtthb56"},{"id":"https://openalex.org/F4320323299","display_name":"Norges Forskningsr\u00e5d","ror":"https://ror.org/00epmv149"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3097592152.pdf","grobid_xml":"https://content.openalex.org/works/W3097592152.grobid-xml"},"referenced_works_count":25,"referenced_works":["https://openalex.org/W1516900628","https://openalex.org/W2014677321","https://openalex.org/W2031140266","https://openalex.org/W2033169664","https://openalex.org/W2042392223","https://openalex.org/W2056446691","https://openalex.org/W2058832897","https://openalex.org/W2065192733","https://openalex.org/W2066829062","https://openalex.org/W2076154138","https://openalex.org/W2101234009","https://openalex.org/W2131669390","https://openalex.org/W2136292095","https://openalex.org/W2305687918","https://openalex.org/W2760584685","https://openalex.org/W2765745983","https://openalex.org/W2785792383","https://openalex.org/W2800245987","https://openalex.org/W3003257820","https://openalex.org/W3103145119","https://openalex.org/W4242928728","https://openalex.org/W4251774738","https://openalex.org/W4253785452","https://openalex.org/W6675354045","https://openalex.org/W6979145273"],"related_works":["https://openalex.org/W4379233589","https://openalex.org/W2335033221","https://openalex.org/W1970112624","https://openalex.org/W2092808452","https://openalex.org/W2415449752","https://openalex.org/W1499958165","https://openalex.org/W3022338549","https://openalex.org/W2422532047","https://openalex.org/W4231719409","https://openalex.org/W1592060630"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":7},{"year":2023,"cited_by_count":10},{"year":2022,"cited_by_count":9},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":1}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
