{"id":"https://openalex.org/W3094557315","doi":"https://doi.org/10.1093/bioinformatics/btaa913","title":"A representation model for biological entities by fusing structured axioms with unstructured texts","display_name":"A representation model for biological entities by fusing structured axioms with unstructured texts","publication_year":2020,"publication_date":"2020-10-13","ids":{"openalex":"https://openalex.org/W3094557315","doi":"https://doi.org/10.1093/bioinformatics/btaa913","mag":"3094557315","pmid":"https://pubmed.ncbi.nlm.nih.gov/33107905"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btaa913","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa913","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5019903374","display_name":"Peiliang Lou","orcid":"https://orcid.org/0000-0002-6683-0256"},"institutions":[{"id":"https://openalex.org/I87445476","display_name":"Xi'an Jiaotong University","ror":"https://ror.org/017zhmm22","country_code":"CN","type":"education","lineage":["https://openalex.org/I87445476"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Peiliang Lou","raw_affiliation_strings":["Key Laboratory of Intelligent Networks and Network Security (Xi\u2019an Jiaotong University), Ministry of Education, Xi\u2019an , Shaanxi 710049, China","School of Computer Science and Technology, Xi\u2019an Jiaotong University , Xi\u2019an, Shaanxi 710049, China"],"affiliations":[{"raw_affiliation_string":"Key Laboratory of Intelligent Networks and Network Security (Xi\u2019an Jiaotong University), Ministry of Education, Xi\u2019an , Shaanxi 710049, China","institution_ids":["https://openalex.org/I87445476"]},{"raw_affiliation_string":"School of Computer Science and Technology, Xi\u2019an Jiaotong University , Xi\u2019an, Shaanxi 710049, China","institution_ids":["https://openalex.org/I87445476"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101454000","display_name":"Yuxin Dong","orcid":"https://orcid.org/0000-0002-0166-7590"},"institutions":[{"id":"https://openalex.org/I87445476","display_name":"Xi'an Jiaotong University","ror":"https://ror.org/017zhmm22","country_code":"CN","type":"education","lineage":["https://openalex.org/I87445476"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"YuXin Dong","raw_affiliation_strings":["School of Computer Science and Technology, Xi\u2019an Jiaotong University , Xi\u2019an, Shaanxi 710049, China"],"affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology, Xi\u2019an Jiaotong University , Xi\u2019an, Shaanxi 710049, China","institution_ids":["https://openalex.org/I87445476"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077681143","display_name":"Antonio Jimeno Yepes","orcid":"https://orcid.org/0000-0002-6581-094X"},"institutions":[{"id":"https://openalex.org/I4210120068","display_name":"IBM Research - Australia","ror":"https://ror.org/027r3nx49","country_code":"AU","type":"facility","lineage":["https://openalex.org/I1341412227","https://openalex.org/I4210114115","https://openalex.org/I4210120068"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Antonio Jimeno Yepes","raw_affiliation_strings":["IBM Research Australia , Southbank, VIC 3006, Australia"],"affiliations":[{"raw_affiliation_string":"IBM Research Australia , Southbank, VIC 3006, Australia","institution_ids":["https://openalex.org/I4210120068"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100369793","display_name":"Chen Li","orcid":"https://orcid.org/0000-0002-0079-3106"},"institutions":[{"id":"https://openalex.org/I87445476","display_name":"Xi'an Jiaotong University","ror":"https://ror.org/017zhmm22","country_code":"CN","type":"education","lineage":["https://openalex.org/I87445476"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Chen Li","raw_affiliation_strings":["National Engineering Lab for Big Data Analytics, Xi\u2019an Jiaotong University , Xi\u2019an, Shaanxi 710049, China","School of Computer Science and Technology, Xi\u2019an Jiaotong University , Xi\u2019an, Shaanxi 710049, China"],"affiliations":[{"raw_affiliation_string":"National Engineering Lab for Big Data Analytics, Xi\u2019an Jiaotong University , Xi\u2019an, Shaanxi 710049, China","institution_ids":["https://openalex.org/I87445476"]},{"raw_affiliation_string":"School of Computer Science and Technology, Xi\u2019an Jiaotong University , Xi\u2019an, Shaanxi 710049, China","institution_ids":["https://openalex.org/I87445476"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5100369793"],"corresponding_institution_ids":["https://openalex.org/I87445476"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.2507,"has_fulltext":false,"cited_by_count":3,"citation_normalized_percentile":{"value":0.54908123,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":96},"biblio":{"volume":"37","issue":"8","first_page":"1156","last_page":"1163"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.817876935005188},{"id":"https://openalex.org/keywords/axiom","display_name":"Axiom","score":0.7514950037002563},{"id":"https://openalex.org/keywords/encode","display_name":"ENCODE","score":0.691593587398529},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5578826665878296},{"id":"https://openalex.org/keywords/embedding","display_name":"Embedding","score":0.4804270267486572},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.47892603278160095},{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.4600536525249481},{"id":"https://openalex.org/keywords/knowledge-representation-and-reasoning","display_name":"Knowledge representation and reasoning","score":0.43287935853004456},{"id":"https://openalex.org/keywords/relation","display_name":"Relation (database)","score":0.4318191111087799},{"id":"https://openalex.org/keywords/meaning","display_name":"Meaning (existential)","score":0.42477500438690186},{"id":"https://openalex.org/keywords/generality","display_name":"Generality","score":0.4158465266227722},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.35195422172546387},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.17946133017539978}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.817876935005188},{"id":"https://openalex.org/C167729594","wikidata":"https://www.wikidata.org/wiki/Q17736","display_name":"Axiom","level":2,"score":0.7514950037002563},{"id":"https://openalex.org/C66746571","wikidata":"https://www.wikidata.org/wiki/Q1134833","display_name":"ENCODE","level":3,"score":0.691593587398529},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5578826665878296},{"id":"https://openalex.org/C41608201","wikidata":"https://www.wikidata.org/wiki/Q980509","display_name":"Embedding","level":2,"score":0.4804270267486572},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.47892603278160095},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.4600536525249481},{"id":"https://openalex.org/C161301231","wikidata":"https://www.wikidata.org/wiki/Q3478658","display_name":"Knowledge representation and reasoning","level":2,"score":0.43287935853004456},{"id":"https://openalex.org/C25343380","wikidata":"https://www.wikidata.org/wiki/Q277521","display_name":"Relation (database)","level":2,"score":0.4318191111087799},{"id":"https://openalex.org/C2780876879","wikidata":"https://www.wikidata.org/wiki/Q3054749","display_name":"Meaning (existential)","level":2,"score":0.42477500438690186},{"id":"https://openalex.org/C2780767217","wikidata":"https://www.wikidata.org/wiki/Q5532421","display_name":"Generality","level":2,"score":0.4158465266227722},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.35195422172546387},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.17946133017539978},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C15744967","wikidata":"https://www.wikidata.org/wiki/Q9418","display_name":"Psychology","level":0,"score":0.0},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C94625758","wikidata":"https://www.wikidata.org/wiki/Q7163","display_name":"Politics","level":2,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C542102704","wikidata":"https://www.wikidata.org/wiki/Q183257","display_name":"Psychotherapist","level":1,"score":0.0},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007802","descriptor_name":"Language","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007802","descriptor_name":"Language","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007802","descriptor_name":"Language","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051188","descriptor_name":"Knowledge Bases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D051188","descriptor_name":"Knowledge Bases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D051188","descriptor_name":"Knowledge Bases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btaa913","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa913","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:33107905","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/33107905","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/4","display_name":"Quality Education","score":0.5899999737739563}],"awards":[{"id":"https://openalex.org/G6387986177","display_name":null,"funder_award_id":"61721002","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G6547297614","display_name":null,"funder_award_id":"61772409","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G7618720840","display_name":null,"funder_award_id":"2018YFC0910404","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320330193","display_name":"Chinese Academy of Engineering","ror":"https://ror.org/00z3yke57"},{"id":"https://openalex.org/F4320335777","display_name":"National Key Research and Development Program of China","ror":null}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":40,"referenced_works":["https://openalex.org/W1935434993","https://openalex.org/W1974896839","https://openalex.org/W1989277387","https://openalex.org/W2022451103","https://openalex.org/W2126434293","https://openalex.org/W2127795553","https://openalex.org/W2136410628","https://openalex.org/W2139315672","https://openalex.org/W2146495783","https://openalex.org/W2152705149","https://openalex.org/W2152850487","https://openalex.org/W2153579005","https://openalex.org/W2154139219","https://openalex.org/W2158191506","https://openalex.org/W2173732482","https://openalex.org/W2398222005","https://openalex.org/W2562531153","https://openalex.org/W2615066396","https://openalex.org/W2734608416","https://openalex.org/W2779933443","https://openalex.org/W2782350151","https://openalex.org/W2786757148","https://openalex.org/W2799259690","https://openalex.org/W2807567459","https://openalex.org/W2884165257","https://openalex.org/W2899915536","https://openalex.org/W2900569176","https://openalex.org/W2901332105","https://openalex.org/W2950595506","https://openalex.org/W2957436444","https://openalex.org/W2962969117","https://openalex.org/W2965052093","https://openalex.org/W2976494531","https://openalex.org/W3099272318","https://openalex.org/W4233120011","https://openalex.org/W4294170691","https://openalex.org/W6678830454","https://openalex.org/W6682691769","https://openalex.org/W6785881526","https://openalex.org/W6887803762"],"related_works":["https://openalex.org/W2045049461","https://openalex.org/W1978893398","https://openalex.org/W2201908702","https://openalex.org/W4381094582","https://openalex.org/W2369625323","https://openalex.org/W2364579609","https://openalex.org/W1977906818","https://openalex.org/W1522139108","https://openalex.org/W3141784573","https://openalex.org/W3122935400"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":1}],"updated_date":"2026-04-09T08:11:56.329763","created_date":"2025-10-10T00:00:00"}
