{"id":"https://openalex.org/W3093844547","doi":"https://doi.org/10.1093/bioinformatics/btaa907","title":"Using drug descriptions and molecular structures for drug\u2013drug interaction extraction from literature","display_name":"Using drug descriptions and molecular structures for drug\u2013drug interaction extraction from literature","publication_year":2020,"publication_date":"2020-10-09","ids":{"openalex":"https://openalex.org/W3093844547","doi":"https://doi.org/10.1093/bioinformatics/btaa907","mag":"3093844547","pmid":"https://pubmed.ncbi.nlm.nih.gov/33098410"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btaa907","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa907","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/37/12/1739/39119268/btaa907.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/37/12/1739/39119268/btaa907.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5045914141","display_name":"Masaki Asada","orcid":"https://orcid.org/0000-0002-7117-5962"},"institutions":[{"id":"https://openalex.org/I4840577","display_name":"Toyota Technological Institute","ror":"https://ror.org/001hv0k59","country_code":"JP","type":"education","lineage":["https://openalex.org/I4840577"]}],"countries":["JP"],"is_corresponding":true,"raw_author_name":"Masaki Asada","raw_affiliation_strings":["Toyota Technological Institute, 2-12-1 Hisakata , Tempaku-ku, Nagoya 468-8511, Japan"],"affiliations":[{"raw_affiliation_string":"Toyota Technological Institute, 2-12-1 Hisakata , Tempaku-ku, Nagoya 468-8511, Japan","institution_ids":["https://openalex.org/I4840577"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101412540","display_name":"Makoto Miwa","orcid":"https://orcid.org/0000-0002-2330-6972"},"institutions":[{"id":"https://openalex.org/I4840577","display_name":"Toyota Technological Institute","ror":"https://ror.org/001hv0k59","country_code":"JP","type":"education","lineage":["https://openalex.org/I4840577"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Makoto Miwa","raw_affiliation_strings":["Toyota Technological Institute, 2-12-1 Hisakata , Tempaku-ku, Nagoya 468-8511, Japan"],"affiliations":[{"raw_affiliation_string":"Toyota Technological Institute, 2-12-1 Hisakata , Tempaku-ku, Nagoya 468-8511, Japan","institution_ids":["https://openalex.org/I4840577"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5064752144","display_name":"Yutaka Sasaki","orcid":null},"institutions":[{"id":"https://openalex.org/I4840577","display_name":"Toyota Technological Institute","ror":"https://ror.org/001hv0k59","country_code":"JP","type":"education","lineage":["https://openalex.org/I4840577"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Yutaka Sasaki","raw_affiliation_strings":["Toyota Technological Institute, 2-12-1 Hisakata , Tempaku-ku, Nagoya 468-8511, Japan"],"affiliations":[{"raw_affiliation_string":"Toyota Technological Institute, 2-12-1 Hisakata , Tempaku-ku, Nagoya 468-8511, Japan","institution_ids":["https://openalex.org/I4840577"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5045914141"],"corresponding_institution_ids":["https://openalex.org/I4840577"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":6.3587,"has_fulltext":true,"cited_by_count":85,"citation_normalized_percentile":{"value":0.97167836,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":98,"max":100},"biblio":{"volume":"37","issue":"12","first_page":"1739","last_page":"1746"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9934999942779541,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13649","display_name":"Advanced Synthetic Organic Chemistry","score":0.9815999865531921,"subfield":{"id":"https://openalex.org/subfields/1605","display_name":"Organic Chemistry"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/drug","display_name":"Drug","score":0.8744028806686401},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4383414089679718},{"id":"https://openalex.org/keywords/drug-drug-interaction","display_name":"Drug-drug interaction","score":0.42388883233070374},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.38451191782951355},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.33104583621025085},{"id":"https://openalex.org/keywords/pharmacology","display_name":"Pharmacology","score":0.31414592266082764},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.2340739369392395},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1369975209236145}],"concepts":[{"id":"https://openalex.org/C2780035454","wikidata":"https://www.wikidata.org/wiki/Q8386","display_name":"Drug","level":2,"score":0.8744028806686401},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4383414089679718},{"id":"https://openalex.org/C2910466267","wikidata":"https://www.wikidata.org/wiki/Q718753","display_name":"Drug-drug interaction","level":3,"score":0.42388883233070374},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.38451191782951355},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.33104583621025085},{"id":"https://openalex.org/C98274493","wikidata":"https://www.wikidata.org/wiki/Q128406","display_name":"Pharmacology","level":1,"score":0.31414592266082764},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.2340739369392395},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1369975209236145}],"mesh":[{"descriptor_ui":"D004347","descriptor_name":"Drug Interactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004347","descriptor_name":"Drug Interactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004347","descriptor_name":"Drug Interactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004364","descriptor_name":"Pharmaceutical Preparations","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004364","descriptor_name":"Pharmaceutical Preparations","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004364","descriptor_name":"Pharmaceutical Preparations","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011642","descriptor_name":"Publications","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011642","descriptor_name":"Publications","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011642","descriptor_name":"Publications","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015394","descriptor_name":"Molecular Structure","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015394","descriptor_name":"Molecular Structure","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015394","descriptor_name":"Molecular Structure","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btaa907","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa907","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/37/12/1739/39119268/btaa907.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:33098410","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/33098410","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:8289381","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8289381","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btaa907","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa907","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/37/12/1739/39119268/btaa907.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1160716697","display_name":null,"funder_award_id":"KAKENHI [","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"},{"id":"https://openalex.org/G1725584696","display_name":null,"funder_award_id":"20K11962","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"},{"id":"https://openalex.org/G2893431080","display_name":null,"funder_award_id":"17K12741","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"}],"funders":[{"id":"https://openalex.org/F4320334764","display_name":"Japan Society for the Promotion of Science","ror":"https://ror.org/00hhkn466"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3093844547.pdf","grobid_xml":"https://content.openalex.org/works/W3093844547.grobid-xml"},"referenced_works_count":19,"referenced_works":["https://openalex.org/W2063280109","https://openalex.org/W2101234009","https://openalex.org/W2173027866","https://openalex.org/W2264517602","https://openalex.org/W2519744449","https://openalex.org/W2560748602","https://openalex.org/W2565076951","https://openalex.org/W2765081478","https://openalex.org/W2767891136","https://openalex.org/W2780858805","https://openalex.org/W2860192827","https://openalex.org/W2899663614","https://openalex.org/W2964113829","https://openalex.org/W2987928072","https://openalex.org/W3099073033","https://openalex.org/W6675354045","https://openalex.org/W6730534866","https://openalex.org/W6755977528","https://openalex.org/W6770414484"],"related_works":["https://openalex.org/W2899084033","https://openalex.org/W3082755771","https://openalex.org/W2395332729","https://openalex.org/W2407625558","https://openalex.org/W2485789143","https://openalex.org/W2040338448","https://openalex.org/W2415873281","https://openalex.org/W2463344692","https://openalex.org/W4403660838","https://openalex.org/W4248267070"],"abstract_inverted_index":{"Our":[0],"code":[1],"is":[2],"available":[3],"at":[4],"https://github.com/tticoin/DESC_MOL-DDIE.":[5]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":25},{"year":2024,"cited_by_count":14},{"year":2023,"cited_by_count":18},{"year":2022,"cited_by_count":16},{"year":2021,"cited_by_count":10}],"updated_date":"2026-04-21T08:09:41.155169","created_date":"2025-10-10T00:00:00"}
