{"id":"https://openalex.org/W3043142516","doi":"https://doi.org/10.1093/bioinformatics/btaa635","title":"RainbowSTORM: an open-source ImageJ plug-in for spectroscopic single-molecule localization microscopy (sSMLM) data analysis and image reconstruction","display_name":"RainbowSTORM: an open-source ImageJ plug-in for spectroscopic single-molecule localization microscopy (sSMLM) data analysis and image reconstruction","publication_year":2020,"publication_date":"2020-07-07","ids":{"openalex":"https://openalex.org/W3043142516","doi":"https://doi.org/10.1093/bioinformatics/btaa635","mag":"3043142516","pmid":"https://pubmed.ncbi.nlm.nih.gov/32663240"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btaa635","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa635","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/19/4972/34806299/btaa635.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/36/19/4972/34806299/btaa635.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5060813224","display_name":"Janel L. Davis","orcid":"https://orcid.org/0000-0001-6645-0758"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Janel L Davis","raw_affiliation_strings":["Department of Biomedical Engineering"],"affiliations":[{"raw_affiliation_string":"Department of Biomedical Engineering","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016533482","display_name":"Brian T. Soetikno","orcid":"https://orcid.org/0000-0003-4530-4959"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Brian Soetikno","raw_affiliation_strings":["Department of Biomedical Engineering"],"affiliations":[{"raw_affiliation_string":"Department of Biomedical Engineering","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008511430","display_name":"Ki-Hee Song","orcid":"https://orcid.org/0000-0002-1077-2667"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Ki-Hee Song","raw_affiliation_strings":["Department of Biomedical Engineering"],"affiliations":[{"raw_affiliation_string":"Department of Biomedical Engineering","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100354763","display_name":"Yang Zhang","orcid":"https://orcid.org/0000-0003-1011-3001"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Yang Zhang","raw_affiliation_strings":["Department of Biomedical Engineering"],"affiliations":[{"raw_affiliation_string":"Department of Biomedical Engineering","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5049797831","display_name":"Cheng Sun","orcid":"https://orcid.org/0000-0002-2744-0896"},"institutions":[{"id":"https://openalex.org/I111979921","display_name":"Northwestern University","ror":"https://ror.org/000e0be47","country_code":"US","type":"education","lineage":["https://openalex.org/I111979921"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Cheng Sun","raw_affiliation_strings":["Northwestern University Department of Mechanical Engineering, , Evanston, IL 60208, USA"],"affiliations":[{"raw_affiliation_string":"Northwestern University Department of Mechanical Engineering, , Evanston, IL 60208, USA","institution_ids":["https://openalex.org/I111979921"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5079750663","display_name":"Hao F. Zhang","orcid":"https://orcid.org/0000-0001-5089-1196"},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Hao F Zhang","raw_affiliation_strings":["Department of Biomedical Engineering"],"affiliations":[{"raw_affiliation_string":"Department of Biomedical Engineering","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5079750663"],"corresponding_institution_ids":[],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":1.4543,"has_fulltext":false,"cited_by_count":13,"citation_normalized_percentile":{"value":0.85581296,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"36","issue":"19","first_page":"4972","last_page":"4974"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10540","display_name":"Advanced Fluorescence Microscopy Techniques","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10540","display_name":"Advanced Fluorescence Microscopy Techniques","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10857","display_name":"Advanced Electron Microscopy Techniques and Applications","score":0.9972000122070312,"subfield":{"id":"https://openalex.org/subfields/1315","display_name":"Structural Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12867","display_name":"Advanced Biosensing Techniques and Applications","score":0.9948999881744385,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.7757480144500732},{"id":"https://openalex.org/keywords/open-source","display_name":"Open source","score":0.7429697513580322},{"id":"https://openalex.org/keywords/open-source-software","display_name":"Open source software","score":0.7390352487564087},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.662505030632019},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.657956600189209},{"id":"https://openalex.org/keywords/plug-in","display_name":"Plug-in","score":0.6083400249481201},{"id":"https://openalex.org/keywords/java","display_name":"Java","score":0.566401481628418},{"id":"https://openalex.org/keywords/fluorescence","display_name":"Fluorescence","score":0.48652857542037964},{"id":"https://openalex.org/keywords/microscopy","display_name":"Microscopy","score":0.4781514108181},{"id":"https://openalex.org/keywords/fluorescence-microscope","display_name":"Fluorescence microscope","score":0.42539727687835693},{"id":"https://openalex.org/keywords/computer-graphics","display_name":"Computer graphics (images)","score":0.39544785022735596},{"id":"https://openalex.org/keywords/computer-vision","display_name":"Computer vision","score":0.3548925518989563},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.32230764627456665},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.2428407073020935},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.21184134483337402},{"id":"https://openalex.org/keywords/optics","display_name":"Optics","score":0.15124976634979248}],"concepts":[{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.7757480144500732},{"id":"https://openalex.org/C3018397939","wikidata":"https://www.wikidata.org/wiki/Q3644502","display_name":"Open source","level":3,"score":0.7429697513580322},{"id":"https://openalex.org/C2988343187","wikidata":"https://www.wikidata.org/wiki/Q1130645","display_name":"Open source software","level":3,"score":0.7390352487564087},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.662505030632019},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.657956600189209},{"id":"https://openalex.org/C4924752","wikidata":"https://www.wikidata.org/wiki/Q184148","display_name":"Plug-in","level":2,"score":0.6083400249481201},{"id":"https://openalex.org/C548217200","wikidata":"https://www.wikidata.org/wiki/Q251","display_name":"Java","level":2,"score":0.566401481628418},{"id":"https://openalex.org/C91881484","wikidata":"https://www.wikidata.org/wiki/Q191807","display_name":"Fluorescence","level":2,"score":0.48652857542037964},{"id":"https://openalex.org/C147080431","wikidata":"https://www.wikidata.org/wiki/Q1074953","display_name":"Microscopy","level":2,"score":0.4781514108181},{"id":"https://openalex.org/C169274487","wikidata":"https://www.wikidata.org/wiki/Q840211","display_name":"Fluorescence microscope","level":3,"score":0.42539727687835693},{"id":"https://openalex.org/C121684516","wikidata":"https://www.wikidata.org/wiki/Q7600677","display_name":"Computer graphics (images)","level":1,"score":0.39544785022735596},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.3548925518989563},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.32230764627456665},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.2428407073020935},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.21184134483337402},{"id":"https://openalex.org/C120665830","wikidata":"https://www.wikidata.org/wiki/Q14620","display_name":"Optics","level":1,"score":0.15124976634979248}],"mesh":[{"descriptor_ui":"D000072760","descriptor_name":"Single Molecule Imaging","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000072760","descriptor_name":"Single Molecule Imaging","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000072760","descriptor_name":"Single Molecule Imaging","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000078332","descriptor_name":"Data Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000078332","descriptor_name":"Data Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000078332","descriptor_name":"Data Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008853","descriptor_name":"Microscopy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008853","descriptor_name":"Microscopy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008853","descriptor_name":"Microscopy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btaa635","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa635","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/19/4972/34806299/btaa635.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:32663240","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/32663240","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:7723329","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7723329","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btaa635","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa635","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/19/4972/34806299/btaa635.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1317195056","display_name":null,"funder_award_id":"EEC-1530734","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G1740578157","display_name":null,"funder_award_id":"R01EY029121","funder_id":"https://openalex.org/F4320337350","funder_display_name":"National Eye Institute"},{"id":"https://openalex.org/G2129849178","display_name":null,"funder_award_id":"EFRI-1830969","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G219574510","display_name":null,"funder_award_id":"CBET-1706642","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G735045077","display_name":null,"funder_award_id":"R01EY026078","funder_id":"https://openalex.org/F4320337350","funder_display_name":"National Eye Institute"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320337350","display_name":"National Eye Institute","ror":"https://ror.org/03wkg3b53"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3043142516.pdf","grobid_xml":"https://content.openalex.org/works/W3043142516.grobid-xml"},"referenced_works_count":17,"referenced_works":["https://openalex.org/W1124136976","https://openalex.org/W1992858116","https://openalex.org/W2021810362","https://openalex.org/W2054455698","https://openalex.org/W2066521860","https://openalex.org/W2120504118","https://openalex.org/W2134396482","https://openalex.org/W2506320645","https://openalex.org/W2560511804","https://openalex.org/W2726836932","https://openalex.org/W2784835355","https://openalex.org/W2830798991","https://openalex.org/W2896087621","https://openalex.org/W2905304805","https://openalex.org/W2934437784","https://openalex.org/W2990682014","https://openalex.org/W3007678650"],"related_works":["https://openalex.org/W4386041260","https://openalex.org/W4298269242","https://openalex.org/W4298401663","https://openalex.org/W4376877853","https://openalex.org/W1964405022","https://openalex.org/W4300787769","https://openalex.org/W1493891899","https://openalex.org/W4302475558","https://openalex.org/W4301355831","https://openalex.org/W4298345637"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":3},{"year":2022,"cited_by_count":4},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":1}],"updated_date":"2025-11-23T05:10:03.516525","created_date":"2025-10-10T00:00:00"}
