{"id":"https://openalex.org/W3042427971","doi":"https://doi.org/10.1093/bioinformatics/btaa624","title":"Style transfer with variational autoencoders is a promising approach to RNA-Seq data harmonization and analysis","display_name":"Style transfer with variational autoencoders is a promising approach to RNA-Seq data harmonization and analysis","publication_year":2020,"publication_date":"2020-07-09","ids":{"openalex":"https://openalex.org/W3042427971","doi":"https://doi.org/10.1093/bioinformatics/btaa624","mag":"3042427971","pmid":"https://pubmed.ncbi.nlm.nih.gov/33026062"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btaa624","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa624","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/20/5076/35065232/btaa624.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/36/20/5076/35065232/btaa624.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5110652647","display_name":"Nikolai Russkikh","orcid":null},"institutions":[{"id":"https://openalex.org/I4210127387","display_name":"Siberian Branch of the Russian Academy of Sciences","ror":"https://ror.org/02frkq021","country_code":"RU","type":"funder","lineage":["https://openalex.org/I1313323035","https://openalex.org/I4210127387"]}],"countries":["RU"],"is_corresponding":false,"raw_author_name":"Nikolai Russkikh","raw_affiliation_strings":["AcademGene LLC , Novosibirsk 630090, Russia","Laboratory of Complex Systems Simulation, A.P.Ershov Institute of Informatics Systems SB RAS , Novosibirsk 630090, Russia"],"affiliations":[{"raw_affiliation_string":"AcademGene LLC , Novosibirsk 630090, Russia","institution_ids":[]},{"raw_affiliation_string":"Laboratory of Complex Systems Simulation, A.P.Ershov Institute of Informatics Systems SB RAS , Novosibirsk 630090, Russia","institution_ids":["https://openalex.org/I4210127387"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003210645","display_name":"\u0414\u0435\u043d\u0438\u0441 \u0410\u043d\u0442\u043e\u043d\u0435\u0446","orcid":"https://orcid.org/0000-0002-1823-9701"},"institutions":[{"id":"https://openalex.org/I4210127387","display_name":"Siberian Branch of the Russian Academy of Sciences","ror":"https://ror.org/02frkq021","country_code":"RU","type":"funder","lineage":["https://openalex.org/I1313323035","https://openalex.org/I4210127387"]},{"id":"https://openalex.org/I4210145347","display_name":"Federal Service for Surveillance on Consumer Rights Protection and Human Wellbeing","ror":"https://ror.org/03bczw616","country_code":"RU","type":"government","lineage":["https://openalex.org/I4210145347"]},{"id":"https://openalex.org/I2802000777","display_name":"State Research Center of Virology and Biotechnology VECTOR","ror":"https://ror.org/00z7n1h55","country_code":"RU","type":"facility","lineage":["https://openalex.org/I1318325419","https://openalex.org/I2802000777"]}],"countries":["RU"],"is_corresponding":true,"raw_author_name":"Denis Antonets","raw_affiliation_strings":["AcademGene LLC , Novosibirsk 630090, Russia","Laboratory of Complex Systems Simulation, A.P.Ershov Institute of Informatics Systems SB RAS , Novosibirsk 630090, Russia","Theoretical Department, Research Center of Virology and Biotechnology \u201cVector\u201d Rospotrebnadzor , Koltsovo 630559, Russia"],"affiliations":[{"raw_affiliation_string":"AcademGene LLC , Novosibirsk 630090, Russia","institution_ids":[]},{"raw_affiliation_string":"Laboratory of Complex Systems Simulation, A.P.Ershov Institute of Informatics Systems SB RAS , Novosibirsk 630090, Russia","institution_ids":["https://openalex.org/I4210127387"]},{"raw_affiliation_string":"Theoretical Department, Research Center of Virology and Biotechnology \u201cVector\u201d Rospotrebnadzor , Koltsovo 630559, Russia","institution_ids":["https://openalex.org/I2802000777","https://openalex.org/I4210145347"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5060545636","display_name":"Dmitry Shtokalo","orcid":"https://orcid.org/0000-0003-3716-2794"},"institutions":[{"id":"https://openalex.org/I4210127387","display_name":"Siberian Branch of the Russian Academy of Sciences","ror":"https://ror.org/02frkq021","country_code":"RU","type":"funder","lineage":["https://openalex.org/I1313323035","https://openalex.org/I4210127387"]},{"id":"https://openalex.org/I4210090957","display_name":"Russian Cancer Research Center NN Blokhin","ror":"https://ror.org/00ab9fg88","country_code":"RU","type":"facility","lineage":["https://openalex.org/I4210090957"]}],"countries":["RU"],"is_corresponding":false,"raw_author_name":"Dmitry Shtokalo","raw_affiliation_strings":["AcademGene LLC , Novosibirsk 630090, Russia","Cancer Research Foundation , Moscow 109316, Russia","Laboratory of Complex Systems Simulation, A.P.Ershov Institute of Informatics Systems SB RAS , Novosibirsk 630090, Russia"],"affiliations":[{"raw_affiliation_string":"AcademGene LLC , Novosibirsk 630090, Russia","institution_ids":[]},{"raw_affiliation_string":"Cancer Research Foundation , Moscow 109316, Russia","institution_ids":["https://openalex.org/I4210090957"]},{"raw_affiliation_string":"Laboratory of Complex Systems Simulation, A.P.Ershov Institute of Informatics Systems SB RAS , Novosibirsk 630090, Russia","institution_ids":["https://openalex.org/I4210127387"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019967040","display_name":"Aleksandr Makarov","orcid":"https://orcid.org/0000-0001-8421-1013"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Alexander Makarov","raw_affiliation_strings":["AcademGene LLC , Novosibirsk 630090, Russia"],"affiliations":[{"raw_affiliation_string":"AcademGene LLC , Novosibirsk 630090, Russia","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050455475","display_name":"Yuri V. Vyatkin","orcid":"https://orcid.org/0000-0002-9056-8796"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Yuri Vyatkin","raw_affiliation_strings":["AcademGene LLC , Novosibirsk 630090, Russia"],"affiliations":[{"raw_affiliation_string":"AcademGene LLC , Novosibirsk 630090, Russia","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5080525121","display_name":"Alexey Zakharov","orcid":"https://orcid.org/0000-0003-2466-1711"},"institutions":[{"id":"https://openalex.org/I4210090957","display_name":"Russian Cancer Research Center NN Blokhin","ror":"https://ror.org/00ab9fg88","country_code":"RU","type":"facility","lineage":["https://openalex.org/I4210090957"]}],"countries":["RU"],"is_corresponding":false,"raw_author_name":"Alexey Zakharov","raw_affiliation_strings":["Cancer Research Foundation , Moscow 109316, Russia"],"affiliations":[{"raw_affiliation_string":"Cancer Research Foundation , Moscow 109316, Russia","institution_ids":["https://openalex.org/I4210090957"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5042508339","display_name":"Evgeny Terentyev","orcid":null},"institutions":[{"id":"https://openalex.org/I4210090957","display_name":"Russian Cancer Research Center NN Blokhin","ror":"https://ror.org/00ab9fg88","country_code":"RU","type":"facility","lineage":["https://openalex.org/I4210090957"]}],"countries":["RU"],"is_corresponding":false,"raw_author_name":"Evgeny Terentyev","raw_affiliation_strings":["Cancer Research Foundation , Moscow 109316, Russia"],"affiliations":[{"raw_affiliation_string":"Cancer Research Foundation , Moscow 109316, Russia","institution_ids":["https://openalex.org/I4210090957"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5003210645"],"corresponding_institution_ids":["https://openalex.org/I2802000777","https://openalex.org/I4210127387","https://openalex.org/I4210145347"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.6391,"has_fulltext":false,"cited_by_count":23,"citation_normalized_percentile":{"value":0.61367285,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"36","issue":"20","first_page":"5076","last_page":"5085"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9976000189781189,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10062","display_name":"MicroRNA in disease regulation","score":0.9973000288009644,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7739633321762085},{"id":"https://openalex.org/keywords/harmonization","display_name":"Harmonization","score":0.6446509957313538},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.6076651811599731},{"id":"https://openalex.org/keywords/semantics","display_name":"Semantics (computer science)","score":0.5969516038894653},{"id":"https://openalex.org/keywords/transfer-of-learning","display_name":"Transfer of learning","score":0.5642591118812561},{"id":"https://openalex.org/keywords/style","display_name":"Style (visual arts)","score":0.5593558549880981},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.4951266348361969},{"id":"https://openalex.org/keywords/quality","display_name":"Quality (philosophy)","score":0.4639735817909241},{"id":"https://openalex.org/keywords/expression","display_name":"Expression (computer science)","score":0.44557124376296997},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4442751407623291},{"id":"https://openalex.org/keywords/feature","display_name":"Feature (linguistics)","score":0.43907174468040466},{"id":"https://openalex.org/keywords/measure","display_name":"Measure (data warehouse)","score":0.4249003529548645}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7739633321762085},{"id":"https://openalex.org/C2779962950","wikidata":"https://www.wikidata.org/wiki/Q5659376","display_name":"Harmonization","level":2,"score":0.6446509957313538},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.6076651811599731},{"id":"https://openalex.org/C184337299","wikidata":"https://www.wikidata.org/wiki/Q1437428","display_name":"Semantics (computer science)","level":2,"score":0.5969516038894653},{"id":"https://openalex.org/C150899416","wikidata":"https://www.wikidata.org/wiki/Q1820378","display_name":"Transfer of learning","level":2,"score":0.5642591118812561},{"id":"https://openalex.org/C2776445246","wikidata":"https://www.wikidata.org/wiki/Q1792644","display_name":"Style (visual arts)","level":2,"score":0.5593558549880981},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.4951266348361969},{"id":"https://openalex.org/C2779530757","wikidata":"https://www.wikidata.org/wiki/Q1207505","display_name":"Quality (philosophy)","level":2,"score":0.4639735817909241},{"id":"https://openalex.org/C90559484","wikidata":"https://www.wikidata.org/wiki/Q778379","display_name":"Expression (computer science)","level":2,"score":0.44557124376296997},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4442751407623291},{"id":"https://openalex.org/C2776401178","wikidata":"https://www.wikidata.org/wiki/Q12050496","display_name":"Feature (linguistics)","level":2,"score":0.43907174468040466},{"id":"https://openalex.org/C2780009758","wikidata":"https://www.wikidata.org/wiki/Q6804172","display_name":"Measure (data warehouse)","level":2,"score":0.4249003529548645},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C24890656","wikidata":"https://www.wikidata.org/wiki/Q82811","display_name":"Acoustics","level":1,"score":0.0},{"id":"https://openalex.org/C166957645","wikidata":"https://www.wikidata.org/wiki/Q23498","display_name":"Archaeology","level":1,"score":0.0},{"id":"https://openalex.org/C95457728","wikidata":"https://www.wikidata.org/wiki/Q309","display_name":"History","level":0,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000073359","descriptor_name":"Exome Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000073359","descriptor_name":"Exome Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000073359","descriptor_name":"Exome Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000081246","descriptor_name":"RNA-Seq","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000081246","descriptor_name":"RNA-Seq","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000081246","descriptor_name":"RNA-Seq","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btaa624","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa624","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/20/5076/35065232/btaa624.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:33026062","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/33026062","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:7755413","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7755413","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btaa624","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa624","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/20/5076/35065232/btaa624.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3042427971.pdf","grobid_xml":"https://content.openalex.org/works/W3042427971.grobid-xml"},"referenced_works_count":28,"referenced_works":["https://openalex.org/W2069295116","https://openalex.org/W2152773961","https://openalex.org/W2229202799","https://openalex.org/W2510746232","https://openalex.org/W2747998719","https://openalex.org/W2774307122","https://openalex.org/W2788348358","https://openalex.org/W2809368942","https://openalex.org/W2900255713","https://openalex.org/W2901677030","https://openalex.org/W2903466834","https://openalex.org/W2931264270","https://openalex.org/W2951029718","https://openalex.org/W2951381561","https://openalex.org/W2951506174","https://openalex.org/W2952016241","https://openalex.org/W2953067954","https://openalex.org/W2963367647","https://openalex.org/W2965552103","https://openalex.org/W2967290233","https://openalex.org/W2978541146","https://openalex.org/W2997022986","https://openalex.org/W3024013192","https://openalex.org/W3121168830","https://openalex.org/W4288300263","https://openalex.org/W6742297177","https://openalex.org/W6753006048","https://openalex.org/W6764809881"],"related_works":["https://openalex.org/W2006073222","https://openalex.org/W2488916264","https://openalex.org/W2323573032","https://openalex.org/W1908077024","https://openalex.org/W198625436","https://openalex.org/W2095388346","https://openalex.org/W2379751185","https://openalex.org/W2379404183","https://openalex.org/W2004509987","https://openalex.org/W2185986540"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2025,"cited_by_count":7},{"year":2024,"cited_by_count":8},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":4},{"year":2021,"cited_by_count":1}],"updated_date":"2025-11-23T05:10:03.516525","created_date":"2025-10-10T00:00:00"}
