{"id":"https://openalex.org/W3032570153","doi":"https://doi.org/10.1093/bioinformatics/btaa551","title":"ENANO: Encoder for NANOpore FASTQ files","display_name":"ENANO: Encoder for NANOpore FASTQ files","publication_year":2020,"publication_date":"2020-05-26","ids":{"openalex":"https://openalex.org/W3032570153","doi":"https://doi.org/10.1093/bioinformatics/btaa551","mag":"3032570153","pmid":"https://pubmed.ncbi.nlm.nih.gov/32470109"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btaa551","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa551","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/16/4506/33965281/btaa551.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/36/16/4506/33965281/btaa551.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5086351382","display_name":"Guillermo Dufort y \u00c1lvarez","orcid":"https://orcid.org/0000-0001-6125-5603"},"institutions":[{"id":"https://openalex.org/I180910786","display_name":"Universidad de la Rep\u00fablica de Uruguay","ror":"https://ror.org/030bbe882","country_code":"UY","type":"education","lineage":["https://openalex.org/I180910786"]}],"countries":["UY"],"is_corresponding":false,"raw_author_name":"Guillermo Dufort y \u00c1lvarez","raw_affiliation_strings":["Facultad de Ingenier\u00eda, Universidad de la Rep\u00fablica , Montevideo 11300, Uruguay"],"affiliations":[{"raw_affiliation_string":"Facultad de Ingenier\u00eda, Universidad de la Rep\u00fablica , Montevideo 11300, Uruguay","institution_ids":["https://openalex.org/I180910786"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5029865536","display_name":"G. Seroussi","orcid":"https://orcid.org/0000-0002-2893-189X"},"institutions":[{"id":"https://openalex.org/I180910786","display_name":"Universidad de la Rep\u00fablica de Uruguay","ror":"https://ror.org/030bbe882","country_code":"UY","type":"education","lineage":["https://openalex.org/I180910786"]},{"id":"https://openalex.org/I4210127493","display_name":"Xperi (United States)","ror":"https://ror.org/03jn2ja08","country_code":"US","type":"company","lineage":["https://openalex.org/I4210127493"]}],"countries":["US","UY"],"is_corresponding":false,"raw_author_name":"Gadiel Seroussi","raw_affiliation_strings":["Facultad de Ingenier\u00eda, Universidad de la Rep\u00fablica , Montevideo 11300, Uruguay","Xperi Corp , San Jose, CA 95134, USA"],"affiliations":[{"raw_affiliation_string":"Facultad de Ingenier\u00eda, Universidad de la Rep\u00fablica , Montevideo 11300, Uruguay","institution_ids":["https://openalex.org/I180910786"]},{"raw_affiliation_string":"Xperi Corp , San Jose, CA 95134, USA","institution_ids":["https://openalex.org/I4210127493"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5018723976","display_name":"Pablo Smircich","orcid":"https://orcid.org/0000-0002-3856-3920"},"institutions":[{"id":"https://openalex.org/I180910786","display_name":"Universidad de la Rep\u00fablica de Uruguay","ror":"https://ror.org/030bbe882","country_code":"UY","type":"education","lineage":["https://openalex.org/I180910786"]},{"id":"https://openalex.org/I4210157419","display_name":"Instituto de Investigaciones Biol\u00f3gicas Clemente Estable","ror":"https://ror.org/05b50ej63","country_code":"UY","type":"nonprofit","lineage":["https://openalex.org/I4210098830","https://openalex.org/I4210157419"]}],"countries":["UY"],"is_corresponding":false,"raw_author_name":"Pablo Smircich","raw_affiliation_strings":["Facultad de Ciencias, Universidad de la Rep\u00fablica , Montevideo 11400, Uruguay","Instituto de Investigaciones Biol\u00f3gicas Clemente Estable Departamento de Gen\u00f3mica, , Montevideo 11600, Uruguay"],"affiliations":[{"raw_affiliation_string":"Facultad de Ciencias, Universidad de la Rep\u00fablica , Montevideo 11400, Uruguay","institution_ids":["https://openalex.org/I180910786"]},{"raw_affiliation_string":"Instituto de Investigaciones Biol\u00f3gicas Clemente Estable Departamento de Gen\u00f3mica, , Montevideo 11600, Uruguay","institution_ids":["https://openalex.org/I4210157419"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5035076031","display_name":"Jos\u00e9 Sotelo","orcid":null},"institutions":[{"id":"https://openalex.org/I180910786","display_name":"Universidad de la Rep\u00fablica de Uruguay","ror":"https://ror.org/030bbe882","country_code":"UY","type":"education","lineage":["https://openalex.org/I180910786"]},{"id":"https://openalex.org/I4210157419","display_name":"Instituto de Investigaciones Biol\u00f3gicas Clemente Estable","ror":"https://ror.org/05b50ej63","country_code":"UY","type":"nonprofit","lineage":["https://openalex.org/I4210098830","https://openalex.org/I4210157419"]}],"countries":["UY"],"is_corresponding":false,"raw_author_name":"Jos\u00e9 Sotelo","raw_affiliation_strings":["Facultad de Ciencias, Universidad de la Rep\u00fablica , Montevideo 11400, Uruguay","Instituto de Investigaciones Biol\u00f3gicas Clemente Estable Departamento de Gen\u00f3mica, , Montevideo 11600, Uruguay"],"affiliations":[{"raw_affiliation_string":"Facultad de Ciencias, Universidad de la Rep\u00fablica , Montevideo 11400, Uruguay","institution_ids":["https://openalex.org/I180910786"]},{"raw_affiliation_string":"Instituto de Investigaciones Biol\u00f3gicas Clemente Estable Departamento de Gen\u00f3mica, , Montevideo 11600, Uruguay","institution_ids":["https://openalex.org/I4210157419"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045294377","display_name":"Idoia Ochoa","orcid":"https://orcid.org/0000-0003-1864-7868"},"institutions":[{"id":"https://openalex.org/I88155538","display_name":"Universidad de Navarra","ror":"https://ror.org/02rxc7m23","country_code":"ES","type":"education","lineage":["https://openalex.org/I88155538"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"Idoia Ochoa","raw_affiliation_strings":["TECNUN School of Engineering, University of Navarra , Donostia-San Sebasti\u00e1n 20018, Spain"],"affiliations":[{"raw_affiliation_string":"TECNUN School of Engineering, University of Navarra , Donostia-San Sebasti\u00e1n 20018, Spain","institution_ids":["https://openalex.org/I88155538"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5033879041","display_name":"\u00c1lvaro Mart\u00edn","orcid":"https://orcid.org/0000-0001-8601-1242"},"institutions":[{"id":"https://openalex.org/I180910786","display_name":"Universidad de la Rep\u00fablica de Uruguay","ror":"https://ror.org/030bbe882","country_code":"UY","type":"education","lineage":["https://openalex.org/I180910786"]}],"countries":["UY"],"is_corresponding":true,"raw_author_name":"\u00c1lvaro Mart\u00edn","raw_affiliation_strings":["Facultad de Ingenier\u00eda, Universidad de la Rep\u00fablica , Montevideo 11300, Uruguay"],"affiliations":[{"raw_affiliation_string":"Facultad de Ingenier\u00eda, Universidad de la Rep\u00fablica , Montevideo 11300, Uruguay","institution_ids":["https://openalex.org/I180910786"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5033879041","https://openalex.org/A5045294377"],"corresponding_institution_ids":["https://openalex.org/I180910786","https://openalex.org/I88155538"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":3.3002,"has_fulltext":true,"cited_by_count":21,"citation_normalized_percentile":{"value":0.92457352,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":91,"max":98},"biblio":{"volume":"36","issue":"16","first_page":"4506","last_page":"4507"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10054","display_name":"Parallel Computing and Optimization Techniques","score":0.992900013923645,"subfield":{"id":"https://openalex.org/subfields/1708","display_name":"Hardware and Architecture"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10054","display_name":"Parallel Computing and Optimization Techniques","score":0.992900013923645,"subfield":{"id":"https://openalex.org/subfields/1708","display_name":"Hardware and Architecture"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11582","display_name":"Nanopore and Nanochannel Transport Studies","score":0.9918000102043152,"subfield":{"id":"https://openalex.org/subfields/2204","display_name":"Biomedical Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10558","display_name":"Advancements in Semiconductor Devices and Circuit Design","score":0.9811999797821045,"subfield":{"id":"https://openalex.org/subfields/2208","display_name":"Electrical and Electronic Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/encoder","display_name":"Encoder","score":0.8014060258865356},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7633280158042908},{"id":"https://openalex.org/keywords/nanopore","display_name":"Nanopore","score":0.5822771787643433},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.4213241934776306},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.3383277356624603},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.10123145580291748},{"id":"https://openalex.org/keywords/nanotechnology","display_name":"Nanotechnology","score":0.04077601432800293},{"id":"https://openalex.org/keywords/materials-science","display_name":"Materials science","score":0.03953021764755249}],"concepts":[{"id":"https://openalex.org/C118505674","wikidata":"https://www.wikidata.org/wiki/Q42586063","display_name":"Encoder","level":2,"score":0.8014060258865356},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7633280158042908},{"id":"https://openalex.org/C141795571","wikidata":"https://www.wikidata.org/wiki/Q580942","display_name":"Nanopore","level":2,"score":0.5822771787643433},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.4213241934776306},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.3383277356624603},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.10123145580291748},{"id":"https://openalex.org/C171250308","wikidata":"https://www.wikidata.org/wiki/Q11468","display_name":"Nanotechnology","level":1,"score":0.04077601432800293},{"id":"https://openalex.org/C192562407","wikidata":"https://www.wikidata.org/wiki/Q228736","display_name":"Materials science","level":0,"score":0.03953021764755249}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D044962","descriptor_name":"Data Compression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D044962","descriptor_name":"Data Compression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D044962","descriptor_name":"Data Compression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D058608","descriptor_name":"Nanopores","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D058608","descriptor_name":"Nanopores","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D058608","descriptor_name":"Nanopores","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btaa551","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa551","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/16/4506/33965281/btaa551.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:32470109","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/32470109","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btaa551","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa551","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/16/4506/33965281/btaa551.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/9","score":0.5,"display_name":"Industry, innovation and infrastructure"}],"awards":[{"id":"https://openalex.org/G2694209508","display_name":null,"funder_award_id":"2018-182799","funder_id":"https://openalex.org/F2450793045","funder_display_name":"Programa de Desarrollo de las Ciencias B\u00e1sicas"}],"funders":[{"id":"https://openalex.org/F2450793045","display_name":"Programa de Desarrollo de las Ciencias B\u00e1sicas","ror":"https://ror.org/00jkr8r49"},{"id":"https://openalex.org/F4320312065","display_name":"University of Illinois System","ror":"https://ror.org/05e94g991"},{"id":"https://openalex.org/F4320323603","display_name":"Universidad de la Rep\u00fablica Uruguay","ror":"https://ror.org/030bbe882"},{"id":"https://openalex.org/F4320334857","display_name":"Consejo Superior de Investigaciones Cient\u00edficas","ror":"https://ror.org/02gfc7t72"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3032570153.pdf","grobid_xml":"https://content.openalex.org/works/W3032570153.grobid-xml"},"referenced_works_count":8,"referenced_works":["https://openalex.org/W2046419776","https://openalex.org/W2072854577","https://openalex.org/W2082967074","https://openalex.org/W2092880969","https://openalex.org/W2484950111","https://openalex.org/W2538355508","https://openalex.org/W2905575949","https://openalex.org/W2943480039"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2748952813","https://openalex.org/W2055215578","https://openalex.org/W3097090396","https://openalex.org/W2734703372","https://openalex.org/W2267068863","https://openalex.org/W1989500433","https://openalex.org/W2924313437","https://openalex.org/W2328692626","https://openalex.org/W3141442004"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":5},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":5},{"year":2021,"cited_by_count":4},{"year":2020,"cited_by_count":2}],"updated_date":"2026-04-09T08:11:56.329763","created_date":"2020-06-05T00:00:00"}
