{"id":"https://openalex.org/W3020184021","doi":"https://doi.org/10.1093/bioinformatics/btaa270","title":"A reformulation of pLSA for uncertainty estimation and hypothesis testing in bio-imaging","display_name":"A reformulation of pLSA for uncertainty estimation and hypothesis testing in bio-imaging","publication_year":2020,"publication_date":"2020-04-22","ids":{"openalex":"https://openalex.org/W3020184021","doi":"https://doi.org/10.1093/bioinformatics/btaa270","mag":"3020184021","pmid":"https://pubmed.ncbi.nlm.nih.gov/32348460"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btaa270","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa270","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/13/4080/33459070/btaa270.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/36/13/4080/33459070/btaa270.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5075666274","display_name":"P. Tar","orcid":null},"institutions":[{"id":"https://openalex.org/I28407311","display_name":"University of Manchester","ror":"https://ror.org/027m9bs27","country_code":"GB","type":"education","lineage":["https://openalex.org/I28407311"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"P D Tar","raw_affiliation_strings":["Division of Cancer Sciences , The University of Manchester, M13 9PG Manchester, UK","Division of Informatics , Imaging and Data Sciences"],"affiliations":[{"raw_affiliation_string":"Division of Cancer Sciences , The University of Manchester, M13 9PG Manchester, UK","institution_ids":["https://openalex.org/I28407311"]},{"raw_affiliation_string":"Division of Informatics , Imaging and Data Sciences","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110020977","display_name":"N. A. Thacker","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"N A Thacker","raw_affiliation_strings":["Division of Informatics , Imaging and Data Sciences"],"affiliations":[{"raw_affiliation_string":"Division of Informatics , Imaging and Data Sciences","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5080071277","display_name":"Somrudee Deepaisarn","orcid":"https://orcid.org/0000-0001-7647-6345"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"S Deepaisarn","raw_affiliation_strings":["Division of Informatics , Imaging and Data Sciences"],"affiliations":[{"raw_affiliation_string":"Division of Informatics , Imaging and Data Sciences","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091801564","display_name":"James P.B. O\u2019Connor","orcid":"https://orcid.org/0000-0002-4044-8497"},"institutions":[{"id":"https://openalex.org/I28407311","display_name":"University of Manchester","ror":"https://ror.org/027m9bs27","country_code":"GB","type":"education","lineage":["https://openalex.org/I28407311"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"J P B O\u2019Connor","raw_affiliation_strings":["Division of Cancer Sciences , The University of Manchester, M13 9PG Manchester, UK"],"affiliations":[{"raw_affiliation_string":"Division of Cancer Sciences , The University of Manchester, M13 9PG Manchester, UK","institution_ids":["https://openalex.org/I28407311"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5087985727","display_name":"Adam McMahon","orcid":"https://orcid.org/0000-0002-6130-2008"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"A W McMahon","raw_affiliation_strings":["Division of Informatics , Imaging and Data Sciences"],"affiliations":[{"raw_affiliation_string":"Division of Informatics , Imaging and Data Sciences","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5075666274"],"corresponding_institution_ids":["https://openalex.org/I28407311"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":0.1671,"has_fulltext":true,"cited_by_count":3,"citation_normalized_percentile":{"value":0.49319177,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":"36","issue":"13","first_page":"4080","last_page":"4087"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.994700014591217,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.994700014591217,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9937000274658203,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10378","display_name":"Advanced MRI Techniques and Applications","score":0.9837999939918518,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6518789529800415},{"id":"https://openalex.org/keywords/probabilistic-latent-semantic-analysis","display_name":"Probabilistic latent semantic analysis","score":0.5783795714378357},{"id":"https://openalex.org/keywords/statistical-hypothesis-testing","display_name":"Statistical hypothesis testing","score":0.5428109765052795},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5232642889022827},{"id":"https://openalex.org/keywords/probabilistic-logic","display_name":"Probabilistic logic","score":0.47117072343826294},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.47020894289016724},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.4548424482345581},{"id":"https://openalex.org/keywords/multiple-comparisons-problem","display_name":"Multiple comparisons problem","score":0.4505860209465027},{"id":"https://openalex.org/keywords/statistical-model","display_name":"Statistical model","score":0.43041059374809265},{"id":"https://openalex.org/keywords/sensitivity","display_name":"Sensitivity (control systems)","score":0.4241068363189697},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4028414487838745},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.23883286118507385},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.19117501378059387}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6518789529800415},{"id":"https://openalex.org/C112933361","wikidata":"https://www.wikidata.org/wiki/Q2845258","display_name":"Probabilistic latent semantic analysis","level":2,"score":0.5783795714378357},{"id":"https://openalex.org/C87007009","wikidata":"https://www.wikidata.org/wiki/Q210832","display_name":"Statistical hypothesis testing","level":2,"score":0.5428109765052795},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5232642889022827},{"id":"https://openalex.org/C49937458","wikidata":"https://www.wikidata.org/wiki/Q2599292","display_name":"Probabilistic logic","level":2,"score":0.47117072343826294},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.47020894289016724},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.4548424482345581},{"id":"https://openalex.org/C183905921","wikidata":"https://www.wikidata.org/wiki/Q1038757","display_name":"Multiple comparisons problem","level":2,"score":0.4505860209465027},{"id":"https://openalex.org/C114289077","wikidata":"https://www.wikidata.org/wiki/Q3284399","display_name":"Statistical model","level":2,"score":0.43041059374809265},{"id":"https://openalex.org/C21200559","wikidata":"https://www.wikidata.org/wiki/Q7451068","display_name":"Sensitivity (control systems)","level":2,"score":0.4241068363189697},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4028414487838745},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.23883286118507385},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.19117501378059387},{"id":"https://openalex.org/C24326235","wikidata":"https://www.wikidata.org/wiki/Q126095","display_name":"Electronic engineering","level":1,"score":0.0},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000077272","descriptor_name":"Latent Class Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000077272","descriptor_name":"Latent Class Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000077272","descriptor_name":"Latent Class Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004058","descriptor_name":"Diffusion","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004058","descriptor_name":"Diffusion","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004058","descriptor_name":"Diffusion","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D035501","descriptor_name":"Uncertainty","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D035501","descriptor_name":"Uncertainty","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D035501","descriptor_name":"Uncertainty","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051381","descriptor_name":"Rats","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051381","descriptor_name":"Rats","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051381","descriptor_name":"Rats","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btaa270","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa270","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/13/4080/33459070/btaa270.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:32348460","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/32348460","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pure.atira.dk:openaire_cris_publications/eee909d0-7740-4139-bc21-a6f919a4ea0e","is_oa":false,"landing_page_url":"https://research.manchester.ac.uk/en/publications/eee909d0-7740-4139-bc21-a6f919a4ea0e","pdf_url":null,"source":{"id":"https://openalex.org/S4306400662","display_name":"Research Explorer (The University of Manchester)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I28407311","host_organization_name":"University of Manchester","host_organization_lineage":["https://openalex.org/I28407311"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Tar, P, Thacker, N, Deepaisarn, S, O'Connor, J & McMahon, A 2020, 'A reformulation of pLSA for uncertainty estimation and hypothesis testing in bio-imaging', Bioinformatics (Oxford, England).","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:pubmedcentral.nih.gov:7332574","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7332574","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btaa270","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa270","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/13/4080/33459070/btaa270.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/16","display_name":"Peace, Justice and strong institutions","score":0.47999998927116394}],"awards":[],"funders":[{"id":"https://openalex.org/F4320319985","display_name":"Cancer Research UK","ror":"https://ror.org/054225q67"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3020184021.pdf","grobid_xml":"https://content.openalex.org/works/W3020184021.grobid-xml"},"referenced_works_count":19,"referenced_works":["https://openalex.org/W1902027874","https://openalex.org/W2005563858","https://openalex.org/W2013921918","https://openalex.org/W2015795623","https://openalex.org/W2017460912","https://openalex.org/W2018464968","https://openalex.org/W2021262032","https://openalex.org/W2023412786","https://openalex.org/W2072074442","https://openalex.org/W2089763487","https://openalex.org/W2091161903","https://openalex.org/W2113427958","https://openalex.org/W2128355846","https://openalex.org/W2144750001","https://openalex.org/W2763327666","https://openalex.org/W2789972127","https://openalex.org/W2791484882","https://openalex.org/W2792983928","https://openalex.org/W2904185096"],"related_works":["https://openalex.org/W2002739602","https://openalex.org/W2345647014","https://openalex.org/W154531455","https://openalex.org/W2201192772","https://openalex.org/W1976797354","https://openalex.org/W2088387197","https://openalex.org/W3136891595","https://openalex.org/W2535030201","https://openalex.org/W1964819397","https://openalex.org/W3174861742"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":1}],"updated_date":"2026-04-05T17:49:38.594831","created_date":"2025-10-10T00:00:00"}
