{"id":"https://openalex.org/W3015565387","doi":"https://doi.org/10.1093/bioinformatics/btaa237","title":"Portable nanopore analytics: are we there yet?","display_name":"Portable nanopore analytics: are we there yet?","publication_year":2020,"publication_date":"2020-04-06","ids":{"openalex":"https://openalex.org/W3015565387","doi":"https://doi.org/10.1093/bioinformatics/btaa237","mag":"3015565387","pmid":"https://pubmed.ncbi.nlm.nih.gov/32277811"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btaa237","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa237","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7828464","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5020831803","display_name":"Marco Ant\u00f4nio Oliva","orcid":"https://orcid.org/0000-0003-0525-3114"},"institutions":[{"id":"https://openalex.org/I119003972","display_name":"Roma Tre University","ror":"https://ror.org/05vf0dg29","country_code":"IT","type":"education","lineage":["https://openalex.org/I119003972"]}],"countries":["IT"],"is_corresponding":true,"raw_author_name":"Marco Oliva","raw_affiliation_strings":["Department of Computer and Information Science and Engineering","Department of Engineering, Roma Tre University , Rome, Italy"],"affiliations":[{"raw_affiliation_string":"Department of Computer and Information Science and Engineering","institution_ids":[]},{"raw_affiliation_string":"Department of Engineering, Roma Tre University , Rome, Italy","institution_ids":["https://openalex.org/I119003972"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017152835","display_name":"Franco Milicchio","orcid":"https://orcid.org/0000-0002-4875-4894"},"institutions":[{"id":"https://openalex.org/I119003972","display_name":"Roma Tre University","ror":"https://ror.org/05vf0dg29","country_code":"IT","type":"education","lineage":["https://openalex.org/I119003972"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Franco Milicchio","raw_affiliation_strings":["Department of Engineering, Roma Tre University , Rome, Italy"],"affiliations":[{"raw_affiliation_string":"Department of Engineering, Roma Tre University , Rome, Italy","institution_ids":["https://openalex.org/I119003972"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053973554","display_name":"Kaden King","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Kaden King","raw_affiliation_strings":["Department of Computer and Information Science and Engineering"],"affiliations":[{"raw_affiliation_string":"Department of Computer and Information Science and Engineering","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5024595756","display_name":"Grace Benson","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Grace Benson","raw_affiliation_strings":["Department of Computer and Information Science and Engineering"],"affiliations":[{"raw_affiliation_string":"Department of Computer and Information Science and Engineering","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5021635660","display_name":"Christina Boucher","orcid":"https://orcid.org/0000-0001-9509-9725"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Christina Boucher","raw_affiliation_strings":["Department of Computer and Information Science and Engineering"],"affiliations":[{"raw_affiliation_string":"Department of Computer and Information Science and Engineering","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5039419132","display_name":"Mattia Prosperi","orcid":"https://orcid.org/0000-0002-9021-5595"},"institutions":[{"id":"https://openalex.org/I33213144","display_name":"University of Florida","ror":"https://ror.org/02y3ad647","country_code":"US","type":"education","lineage":["https://openalex.org/I33213144"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Mattia Prosperi","raw_affiliation_strings":["Department of Epidemiology, University of Florida , Gainesville, FL 32610, USA"],"affiliations":[{"raw_affiliation_string":"Department of Epidemiology, University of Florida , Gainesville, FL 32610, USA","institution_ids":["https://openalex.org/I33213144"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5020831803","https://openalex.org/A5039419132"],"corresponding_institution_ids":["https://openalex.org/I119003972","https://openalex.org/I33213144"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":2.0021,"has_fulltext":false,"cited_by_count":27,"citation_normalized_percentile":{"value":0.85681862,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"36","issue":"16","first_page":"4399","last_page":"4405"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11582","display_name":"Nanopore and Nanochannel Transport Studies","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/2204","display_name":"Biomedical Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11582","display_name":"Nanopore and Nanochannel Transport Studies","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/2204","display_name":"Biomedical Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10572","display_name":"Geophysical and Geoelectrical Methods","score":0.98580002784729,"subfield":{"id":"https://openalex.org/subfields/1908","display_name":"Geophysics"},"field":{"id":"https://openalex.org/fields/19","display_name":"Earth and Planetary Sciences"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12166","display_name":"Ion-surface interactions and analysis","score":0.9830999970436096,"subfield":{"id":"https://openalex.org/subfields/2206","display_name":"Computational Mechanics"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/analytics","display_name":"Analytics","score":0.7305985689163208},{"id":"https://openalex.org/keywords/nanopore","display_name":"Nanopore","score":0.6505799889564514},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6259245872497559},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.466231107711792},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.4165725111961365},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.33527305722236633},{"id":"https://openalex.org/keywords/nanotechnology","display_name":"Nanotechnology","score":0.192163348197937},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1423235833644867},{"id":"https://openalex.org/keywords/materials-science","display_name":"Materials science","score":0.11738660931587219},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.09778416156768799}],"concepts":[{"id":"https://openalex.org/C79158427","wikidata":"https://www.wikidata.org/wiki/Q485396","display_name":"Analytics","level":2,"score":0.7305985689163208},{"id":"https://openalex.org/C141795571","wikidata":"https://www.wikidata.org/wiki/Q580942","display_name":"Nanopore","level":2,"score":0.6505799889564514},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6259245872497559},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.466231107711792},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.4165725111961365},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.33527305722236633},{"id":"https://openalex.org/C171250308","wikidata":"https://www.wikidata.org/wiki/Q11468","display_name":"Nanotechnology","level":1,"score":0.192163348197937},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1423235833644867},{"id":"https://openalex.org/C192562407","wikidata":"https://www.wikidata.org/wiki/Q228736","display_name":"Materials science","level":0,"score":0.11738660931587219},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.09778416156768799}],"mesh":[{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019985","descriptor_name":"Benchmarking","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058608","descriptor_name":"Nanopores","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D058608","descriptor_name":"Nanopores","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D058608","descriptor_name":"Nanopores","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btaa237","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa237","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:32277811","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/32277811","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:iris.uniroma3.it:11590/364003","is_oa":false,"landing_page_url":"http://hdl.handle.net/11590/364003","pdf_url":null,"source":{"id":"https://openalex.org/S4377196120","display_name":"Iris (Roma Tre University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I119003972","host_organization_name":"Roma Tre University","host_organization_lineage":["https://openalex.org/I119003972"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:pubmedcentral.nih.gov:7828464","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7828464","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"pmh:oai:pubmedcentral.nih.gov:7828464","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7828464","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/9","display_name":"Industry, innovation and infrastructure","score":0.5199999809265137}],"awards":[{"id":"https://openalex.org/G2177457621","display_name":null,"funder_award_id":"1R01AI141810-01","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":44,"referenced_works":["https://openalex.org/W1997246534","https://openalex.org/W2045204781","https://openalex.org/W2057253402","https://openalex.org/W2103441770","https://openalex.org/W2105067980","https://openalex.org/W2108234281","https://openalex.org/W2115501618","https://openalex.org/W2129949113","https://openalex.org/W2133531097","https://openalex.org/W2141200343","https://openalex.org/W2150131459","https://openalex.org/W2158714788","https://openalex.org/W2159954944","https://openalex.org/W2170551349","https://openalex.org/W2280128538","https://openalex.org/W2340761128","https://openalex.org/W2396849069","https://openalex.org/W2438121987","https://openalex.org/W2514454343","https://openalex.org/W2526857311","https://openalex.org/W2550586733","https://openalex.org/W2562683361","https://openalex.org/W2575750030","https://openalex.org/W2583958067","https://openalex.org/W2607669908","https://openalex.org/W2611549381","https://openalex.org/W2735261832","https://openalex.org/W2738795499","https://openalex.org/W2772019197","https://openalex.org/W2789843538","https://openalex.org/W2809649683","https://openalex.org/W2886767805","https://openalex.org/W2949279762","https://openalex.org/W2949303487","https://openalex.org/W2950354111","https://openalex.org/W2951010501","https://openalex.org/W2951397007","https://openalex.org/W2952597168","https://openalex.org/W2953147862","https://openalex.org/W2972557657","https://openalex.org/W3102099358","https://openalex.org/W3136918052","https://openalex.org/W4247053599","https://openalex.org/W6737462116"],"related_works":["https://openalex.org/W2055215578","https://openalex.org/W3097090396","https://openalex.org/W2734703372","https://openalex.org/W2267068863","https://openalex.org/W1989500433","https://openalex.org/W2924313437","https://openalex.org/W2328692626","https://openalex.org/W3141442004","https://openalex.org/W2078561390","https://openalex.org/W2025735958"],"abstract_inverted_index":{"The":[0],"source":[1],"code":[2],"is":[3],"freely":[4],"available":[5],"at:":[6],"https://github.com/marco-oliva/portable-nanopore-analytics.":[7]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":4},{"year":2022,"cited_by_count":11},{"year":2021,"cited_by_count":7},{"year":2020,"cited_by_count":1}],"updated_date":"2026-04-09T08:11:56.329763","created_date":"2025-10-10T00:00:00"}
