{"id":"https://openalex.org/W3015754762","doi":"https://doi.org/10.1093/bioinformatics/btaa235","title":"MODifieR: an Ensemble R Package for Inference of Disease Modules from Transcriptomics Networks","display_name":"MODifieR: an Ensemble R Package for Inference of Disease Modules from Transcriptomics Networks","publication_year":2020,"publication_date":"2020-04-02","ids":{"openalex":"https://openalex.org/W3015754762","doi":"https://doi.org/10.1093/bioinformatics/btaa235","mag":"3015754762","pmid":"https://pubmed.ncbi.nlm.nih.gov/32271876"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btaa235","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa235","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/12/3918/33492272/btaa235.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/36/12/3918/33492272/btaa235.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5079006873","display_name":"Hendrik Weerd","orcid":"https://orcid.org/0000-0001-7804-1177"},"institutions":[{"id":"https://openalex.org/I102134673","display_name":"Link\u00f6ping University","ror":"https://ror.org/05ynxx418","country_code":"SE","type":"education","lineage":["https://openalex.org/I102134673"]},{"id":"https://openalex.org/I205158640","display_name":"University of Sk\u00f6vde","ror":"https://ror.org/051mrsz47","country_code":"SE","type":"education","lineage":["https://openalex.org/I205158640"]}],"countries":["SE"],"is_corresponding":false,"raw_author_name":"Hendrik A de Weerd","raw_affiliation_strings":["Department of Physics , Chemistry and Biology, Link\u00f6ping University, Link\u00f6ping 581 83, Sweden","School of Bioscience , Systems Biology Research Center, Sk\u00f6vde 541 45, Sweden"],"affiliations":[{"raw_affiliation_string":"Department of Physics , Chemistry and Biology, Link\u00f6ping University, Link\u00f6ping 581 83, Sweden","institution_ids":["https://openalex.org/I102134673"]},{"raw_affiliation_string":"School of Bioscience , Systems Biology Research Center, Sk\u00f6vde 541 45, Sweden","institution_ids":["https://openalex.org/I205158640"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010166821","display_name":"Tejaswi V. S. Badam","orcid":"https://orcid.org/0000-0002-6719-4861"},"institutions":[{"id":"https://openalex.org/I102134673","display_name":"Link\u00f6ping University","ror":"https://ror.org/05ynxx418","country_code":"SE","type":"education","lineage":["https://openalex.org/I102134673"]},{"id":"https://openalex.org/I205158640","display_name":"University of Sk\u00f6vde","ror":"https://ror.org/051mrsz47","country_code":"SE","type":"education","lineage":["https://openalex.org/I205158640"]}],"countries":["SE"],"is_corresponding":false,"raw_author_name":"Tejaswi V S Badam","raw_affiliation_strings":["Department of Physics , Chemistry and Biology, Link\u00f6ping University, Link\u00f6ping 581 83, Sweden","School of Bioscience , Systems Biology Research Center, Sk\u00f6vde 541 45, Sweden"],"affiliations":[{"raw_affiliation_string":"Department of Physics , Chemistry and Biology, Link\u00f6ping University, Link\u00f6ping 581 83, Sweden","institution_ids":["https://openalex.org/I102134673"]},{"raw_affiliation_string":"School of Bioscience , Systems Biology Research Center, Sk\u00f6vde 541 45, Sweden","institution_ids":["https://openalex.org/I205158640"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007548979","display_name":"David Mart\u00ednez-Enguita","orcid":"https://orcid.org/0000-0002-6363-6298"},"institutions":[{"id":"https://openalex.org/I102134673","display_name":"Link\u00f6ping University","ror":"https://ror.org/05ynxx418","country_code":"SE","type":"education","lineage":["https://openalex.org/I102134673"]}],"countries":["SE"],"is_corresponding":false,"raw_author_name":"David Mart\u00ednez-Enguita","raw_affiliation_strings":["Department of Physics , Chemistry and Biology, Link\u00f6ping University, Link\u00f6ping 581 83, Sweden"],"affiliations":[{"raw_affiliation_string":"Department of Physics , Chemistry and Biology, Link\u00f6ping University, Link\u00f6ping 581 83, Sweden","institution_ids":["https://openalex.org/I102134673"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010675885","display_name":"Julia \u00c5kesson","orcid":"https://orcid.org/0000-0002-9276-0546"},"institutions":[{"id":"https://openalex.org/I205158640","display_name":"University of Sk\u00f6vde","ror":"https://ror.org/051mrsz47","country_code":"SE","type":"education","lineage":["https://openalex.org/I205158640"]},{"id":"https://openalex.org/I102134673","display_name":"Link\u00f6ping University","ror":"https://ror.org/05ynxx418","country_code":"SE","type":"education","lineage":["https://openalex.org/I102134673"]}],"countries":["SE"],"is_corresponding":false,"raw_author_name":"Julia \u00c5kesson","raw_affiliation_strings":["Department of Physics , Chemistry and Biology, Link\u00f6ping University, Link\u00f6ping 581 83, Sweden","School of Bioscience , Systems Biology Research Center, Sk\u00f6vde 541 45, Sweden"],"affiliations":[{"raw_affiliation_string":"Department of Physics , Chemistry and Biology, Link\u00f6ping University, Link\u00f6ping 581 83, Sweden","institution_ids":["https://openalex.org/I102134673"]},{"raw_affiliation_string":"School of Bioscience , Systems Biology Research Center, Sk\u00f6vde 541 45, Sweden","institution_ids":["https://openalex.org/I205158640"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053644742","display_name":"Daniel Muthas","orcid":"https://orcid.org/0000-0001-9320-2004"},"institutions":[{"id":"https://openalex.org/I4210143795","display_name":"AstraZeneca (Sweden)","ror":"https://ror.org/04wwrrg31","country_code":"SE","type":"company","lineage":["https://openalex.org/I105036370","https://openalex.org/I4210143795"]}],"countries":["SE"],"is_corresponding":false,"raw_author_name":"Daniel Muthas","raw_affiliation_strings":["Translational Science and Experimental Medicine , Early Respiratory, Inflammation and Autoimmunity, BioPharmaceuticals R&D, AstraZeneca, M\u00f6lndal 43183, Sweden"],"affiliations":[{"raw_affiliation_string":"Translational Science and Experimental Medicine , Early Respiratory, Inflammation and Autoimmunity, BioPharmaceuticals R&D, AstraZeneca, M\u00f6lndal 43183, Sweden","institution_ids":["https://openalex.org/I4210143795"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5000753874","display_name":"Mika Gustafsson","orcid":"https://orcid.org/0000-0002-0048-4063"},"institutions":[{"id":"https://openalex.org/I102134673","display_name":"Link\u00f6ping University","ror":"https://ror.org/05ynxx418","country_code":"SE","type":"education","lineage":["https://openalex.org/I102134673"]}],"countries":["SE"],"is_corresponding":true,"raw_author_name":"Mika Gustafsson","raw_affiliation_strings":["Department of Physics , Chemistry and Biology, Link\u00f6ping University, Link\u00f6ping 581 83, Sweden"],"affiliations":[{"raw_affiliation_string":"Department of Physics , Chemistry and Biology, Link\u00f6ping University, Link\u00f6ping 581 83, Sweden","institution_ids":["https://openalex.org/I102134673"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5038083124","display_name":"Zelmina Lubovac-Pilav","orcid":"https://orcid.org/0000-0001-6427-0315"},"institutions":[{"id":"https://openalex.org/I205158640","display_name":"University of Sk\u00f6vde","ror":"https://ror.org/051mrsz47","country_code":"SE","type":"education","lineage":["https://openalex.org/I205158640"]}],"countries":["SE"],"is_corresponding":true,"raw_author_name":"Zelmina Lubovac-Pilav","raw_affiliation_strings":["School of Bioscience , Systems Biology Research Center, Sk\u00f6vde 541 45, Sweden"],"affiliations":[{"raw_affiliation_string":"School of Bioscience , Systems Biology Research Center, Sk\u00f6vde 541 45, Sweden","institution_ids":["https://openalex.org/I205158640"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5000753874","https://openalex.org/A5038083124"],"corresponding_institution_ids":["https://openalex.org/I102134673","https://openalex.org/I205158640"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":1.5844,"has_fulltext":false,"cited_by_count":26,"citation_normalized_percentile":{"value":0.83066999,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":95,"max":98},"biblio":{"volume":"36","issue":"12","first_page":"3918","last_page":"3919"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10261","display_name":"Genetic Associations and Epidemiology","score":0.9962999820709229,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.983299970626831,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/inference","display_name":"Inference","score":0.8009017705917358},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7679960131645203},{"id":"https://openalex.org/keywords/r-package","display_name":"R package","score":0.6758182644844055},{"id":"https://openalex.org/keywords/identifier","display_name":"Identifier","score":0.5716395378112793},{"id":"https://openalex.org/keywords/mit-license","display_name":"MIT License","score":0.5097095966339111},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.46100422739982605},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4088952839374542},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.3827189803123474},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3309934735298157},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.3006018102169037}],"concepts":[{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.8009017705917358},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7679960131645203},{"id":"https://openalex.org/C2984074130","wikidata":"https://www.wikidata.org/wiki/Q73539779","display_name":"R package","level":2,"score":0.6758182644844055},{"id":"https://openalex.org/C154504017","wikidata":"https://www.wikidata.org/wiki/Q853614","display_name":"Identifier","level":2,"score":0.5716395378112793},{"id":"https://openalex.org/C174183944","wikidata":"https://www.wikidata.org/wiki/Q334661","display_name":"MIT License","level":3,"score":0.5097095966339111},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.46100422739982605},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4088952839374542},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.3827189803123474},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3309934735298157},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.3006018102169037}],"mesh":[{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btaa235","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa235","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/12/3918/33492272/btaa235.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:32271876","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/32271876","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:DiVA.org:his-18387","is_oa":true,"landing_page_url":"http://urn.kb.se/resolve?urn=urn:nbn:se:his:diva-18387","pdf_url":null,"source":{"id":"https://openalex.org/S4306401029","display_name":"University Library of Sk\u00f6vde (University of Sk\u00f6vde)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205158640","host_organization_name":"University of Sk\u00f6vde","host_organization_lineage":["https://openalex.org/I205158640"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},{"id":"pmh:oai:DiVA.org:liu-168277","is_oa":true,"landing_page_url":"http://urn.kb.se/resolve?urn=urn:nbn:se:liu:diva-168277","pdf_url":null,"source":{"id":"https://openalex.org/S4306401559","display_name":"KTH Publication Database DiVA (KTH Royal Institute of Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btaa235","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa235","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/12/3918/33492272/btaa235.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.4699999988079071,"id":"https://metadata.un.org/sdg/17","display_name":"Partnerships for the goals"}],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3015754762.pdf","grobid_xml":"https://content.openalex.org/works/W3015754762.grobid-xml"},"referenced_works_count":17,"referenced_works":["https://openalex.org/W2072245877","https://openalex.org/W2095898243","https://openalex.org/W2102972756","https://openalex.org/W2110553827","https://openalex.org/W2110684048","https://openalex.org/W2113446988","https://openalex.org/W2114104545","https://openalex.org/W2136850043","https://openalex.org/W2146512944","https://openalex.org/W2169101662","https://openalex.org/W2179438025","https://openalex.org/W2519972260","https://openalex.org/W2883758540","https://openalex.org/W2949184913","https://openalex.org/W2964507182","https://openalex.org/W2970771711","https://openalex.org/W4294329053"],"related_works":["https://openalex.org/W4378651134","https://openalex.org/W4292228088","https://openalex.org/W2137111266","https://openalex.org/W4323353411","https://openalex.org/W2119924680","https://openalex.org/W2098339479","https://openalex.org/W1905939051","https://openalex.org/W3027514154","https://openalex.org/W2566205467","https://openalex.org/W4295227149"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":5},{"year":2023,"cited_by_count":5},{"year":2022,"cited_by_count":4},{"year":2021,"cited_by_count":6},{"year":2020,"cited_by_count":4}],"updated_date":"2026-03-07T16:01:11.037858","created_date":"2025-10-10T00:00:00"}
