{"id":"https://openalex.org/W3015124682","doi":"https://doi.org/10.1093/bioinformatics/btaa230","title":"Learning transferable deep convolutional neural networks for the classification of bacterial virulence factors","display_name":"Learning transferable deep convolutional neural networks for the classification of bacterial virulence factors","publication_year":2020,"publication_date":"2020-04-01","ids":{"openalex":"https://openalex.org/W3015124682","doi":"https://doi.org/10.1093/bioinformatics/btaa230","mag":"3015124682","pmid":"https://pubmed.ncbi.nlm.nih.gov/32251507"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btaa230","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa230","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/12/3693/33437294/btaa230.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/36/12/3693/33437294/btaa230.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101001495","display_name":"Dandan Zheng","orcid":"https://orcid.org/0000-0002-3025-3557"},"institutions":[{"id":"https://openalex.org/I200296433","display_name":"Chinese Academy of Medical Sciences & Peking Union Medical College","ror":"https://ror.org/02drdmm93","country_code":"CN","type":"education","lineage":["https://openalex.org/I200296433"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Dandan Zheng","raw_affiliation_strings":["NHC Key Laboratory of Systems Biology of Pathogens , Institute of Pathogen Biology, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing 100176, China"],"affiliations":[{"raw_affiliation_string":"NHC Key Laboratory of Systems Biology of Pathogens , Institute of Pathogen Biology, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing 100176, China","institution_ids":["https://openalex.org/I200296433"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039104219","display_name":"Guansong Pang","orcid":"https://orcid.org/0000-0002-9877-2716"},"institutions":[{"id":"https://openalex.org/I4210127558","display_name":"Australian Centre for Robotic Vision","ror":"https://ror.org/02zv9xv82","country_code":"AU","type":"facility","lineage":["https://openalex.org/I4210127558"]},{"id":"https://openalex.org/I5681781","display_name":"The University of Adelaide","ror":"https://ror.org/00892tw58","country_code":"AU","type":"education","lineage":["https://openalex.org/I5681781"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Guansong Pang","raw_affiliation_strings":["Australian Institute for Machine Learning , The University of Adelaide, Adelaide, SA 5005, Australia"],"affiliations":[{"raw_affiliation_string":"Australian Institute for Machine Learning , The University of Adelaide, Adelaide, SA 5005, Australia","institution_ids":["https://openalex.org/I4210127558","https://openalex.org/I5681781"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100461773","display_name":"Bo Liu","orcid":"https://orcid.org/0009-0007-3672-4894"},"institutions":[{"id":"https://openalex.org/I200296433","display_name":"Chinese Academy of Medical Sciences & Peking Union Medical College","ror":"https://ror.org/02drdmm93","country_code":"CN","type":"education","lineage":["https://openalex.org/I200296433"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Bo Liu","raw_affiliation_strings":["NHC Key Laboratory of Systems Biology of Pathogens , Institute of Pathogen Biology, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing 100176, China"],"affiliations":[{"raw_affiliation_string":"NHC Key Laboratory of Systems Biology of Pathogens , Institute of Pathogen Biology, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing 100176, China","institution_ids":["https://openalex.org/I200296433"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100725291","display_name":"Lihong Chen","orcid":"https://orcid.org/0000-0002-2302-6890"},"institutions":[{"id":"https://openalex.org/I200296433","display_name":"Chinese Academy of Medical Sciences & Peking Union Medical College","ror":"https://ror.org/02drdmm93","country_code":"CN","type":"education","lineage":["https://openalex.org/I200296433"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Lihong Chen","raw_affiliation_strings":["NHC Key Laboratory of Systems Biology of Pathogens , Institute of Pathogen Biology, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing 100176, China"],"affiliations":[{"raw_affiliation_string":"NHC Key Laboratory of Systems Biology of Pathogens , Institute of Pathogen Biology, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing 100176, China","institution_ids":["https://openalex.org/I200296433"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5083088618","display_name":"Jian Yang","orcid":"https://orcid.org/0000-0002-8826-5198"},"institutions":[{"id":"https://openalex.org/I200296433","display_name":"Chinese Academy of Medical Sciences & Peking Union Medical College","ror":"https://ror.org/02drdmm93","country_code":"CN","type":"education","lineage":["https://openalex.org/I200296433"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Jian Yang","raw_affiliation_strings":["NHC Key Laboratory of Systems Biology of Pathogens , Institute of Pathogen Biology, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing 100176, China"],"affiliations":[{"raw_affiliation_string":"NHC Key Laboratory of Systems Biology of Pathogens , Institute of Pathogen Biology, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing 100176, China","institution_ids":["https://openalex.org/I200296433"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5083088618"],"corresponding_institution_ids":["https://openalex.org/I200296433"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.9193,"has_fulltext":false,"cited_by_count":19,"citation_normalized_percentile":{"value":0.72754453,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":91,"max":99},"biblio":{"volume":"36","issue":"12","first_page":"3693","last_page":"3702"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.979200005531311,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11103","display_name":"Antimicrobial Peptides and Activities","score":0.9703999757766724,"subfield":{"id":"https://openalex.org/subfields/2404","display_name":"Microbiology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7424271702766418},{"id":"https://openalex.org/keywords/convolutional-neural-network","display_name":"Convolutional neural network","score":0.7289326190948486},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.7143200635910034},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.6755927801132202},{"id":"https://openalex.org/keywords/binary-classification","display_name":"Binary classification","score":0.5657437443733215},{"id":"https://openalex.org/keywords/construct","display_name":"Construct (python library)","score":0.5430194735527039},{"id":"https://openalex.org/keywords/f1-score","display_name":"F1 score","score":0.5365092754364014},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.5271543860435486},{"id":"https://openalex.org/keywords/artificial-neural-network","display_name":"Artificial neural network","score":0.5087645649909973},{"id":"https://openalex.org/keywords/code","display_name":"Code (set theory)","score":0.5028867125511169},{"id":"https://openalex.org/keywords/deep-learning","display_name":"Deep learning","score":0.4594403803348541},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.43906983733177185},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.40264004468917847},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3319903612136841},{"id":"https://openalex.org/keywords/support-vector-machine","display_name":"Support vector machine","score":0.1011359691619873},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.1004544198513031},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.06338346004486084}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7424271702766418},{"id":"https://openalex.org/C81363708","wikidata":"https://www.wikidata.org/wiki/Q17084460","display_name":"Convolutional neural network","level":2,"score":0.7289326190948486},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.7143200635910034},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.6755927801132202},{"id":"https://openalex.org/C66905080","wikidata":"https://www.wikidata.org/wiki/Q17005494","display_name":"Binary classification","level":3,"score":0.5657437443733215},{"id":"https://openalex.org/C2780801425","wikidata":"https://www.wikidata.org/wiki/Q5164392","display_name":"Construct (python library)","level":2,"score":0.5430194735527039},{"id":"https://openalex.org/C148524875","wikidata":"https://www.wikidata.org/wiki/Q6975395","display_name":"F1 score","level":2,"score":0.5365092754364014},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.5271543860435486},{"id":"https://openalex.org/C50644808","wikidata":"https://www.wikidata.org/wiki/Q192776","display_name":"Artificial neural network","level":2,"score":0.5087645649909973},{"id":"https://openalex.org/C2776760102","wikidata":"https://www.wikidata.org/wiki/Q5139990","display_name":"Code (set theory)","level":3,"score":0.5028867125511169},{"id":"https://openalex.org/C108583219","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep learning","level":2,"score":0.4594403803348541},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.43906983733177185},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.40264004468917847},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3319903612136841},{"id":"https://openalex.org/C12267149","wikidata":"https://www.wikidata.org/wiki/Q282453","display_name":"Support vector machine","level":2,"score":0.1011359691619873},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.1004544198513031},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.06338346004486084},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D037521","descriptor_name":"Virulence Factors","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D037521","descriptor_name":"Virulence Factors","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D037521","descriptor_name":"Virulence Factors","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btaa230","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa230","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/12/3693/33437294/btaa230.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:32251507","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/32251507","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:ink.library.smu.edu.sg:sis_research-8041","is_oa":true,"landing_page_url":"https://ink.library.smu.edu.sg/cgi/viewcontent.cgi?article=8041&context=sis_research","pdf_url":null,"source":{"id":"https://openalex.org/S4377196871","display_name":"Institutional Knowledge (InK) - Institutional Knowledge at Singapore Management University (Singapore Management University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I79891267","host_organization_name":"Singapore Management University","host_organization_lineage":["https://openalex.org/I79891267"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"https://doi.org/10.1093/bioinformatics/btaa230","raw_type":"Journal Article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btaa230","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa230","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/12/3693/33437294/btaa230.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G34446136","display_name":null,"funder_award_id":"31970635","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320322725","display_name":"China Scholarship Council","ror":"https://ror.org/04atp4p48"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3015124682.pdf","grobid_xml":"https://content.openalex.org/works/W3015124682.grobid-xml"},"referenced_works_count":48,"referenced_works":["https://openalex.org/W1622925613","https://openalex.org/W1970356669","https://openalex.org/W1971452142","https://openalex.org/W1990606937","https://openalex.org/W1992965194","https://openalex.org/W2012673943","https://openalex.org/W2024648909","https://openalex.org/W2039095343","https://openalex.org/W2062176149","https://openalex.org/W2085102470","https://openalex.org/W2087563064","https://openalex.org/W2089468765","https://openalex.org/W2095705004","https://openalex.org/W2115434912","https://openalex.org/W2125031621","https://openalex.org/W2133790733","https://openalex.org/W2138874847","https://openalex.org/W2143411246","https://openalex.org/W2148853951","https://openalex.org/W2158266834","https://openalex.org/W2166125113","https://openalex.org/W2170240176","https://openalex.org/W2170747616","https://openalex.org/W2173913502","https://openalex.org/W2187089797","https://openalex.org/W2265987962","https://openalex.org/W2311607323","https://openalex.org/W2395579298","https://openalex.org/W2737918457","https://openalex.org/W2790865507","https://openalex.org/W2791848964","https://openalex.org/W2807818025","https://openalex.org/W2855293443","https://openalex.org/W2889664156","https://openalex.org/W2898402099","https://openalex.org/W2900102202","https://openalex.org/W2908351833","https://openalex.org/W2911079020","https://openalex.org/W2919115771","https://openalex.org/W2944735543","https://openalex.org/W2951765074","https://openalex.org/W2963012544","https://openalex.org/W3125937743","https://openalex.org/W6674330103","https://openalex.org/W6678885109","https://openalex.org/W6684534429","https://openalex.org/W6685053522","https://openalex.org/W6698064614"],"related_works":["https://openalex.org/W4226493464","https://openalex.org/W4312417841","https://openalex.org/W3193565141","https://openalex.org/W3133861977","https://openalex.org/W2951211570","https://openalex.org/W3103566983","https://openalex.org/W3167935049","https://openalex.org/W3029198973","https://openalex.org/W4399254932","https://openalex.org/W3202613528"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":5},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":3}],"updated_date":"2026-04-05T17:49:38.594831","created_date":"2025-10-10T00:00:00"}
