{"id":"https://openalex.org/W3014831329","doi":"https://doi.org/10.1093/bioinformatics/btaa225","title":"EVICAN\u2014a balanced dataset for algorithm development in cell and nucleus segmentation","display_name":"EVICAN\u2014a balanced dataset for algorithm development in cell and nucleus segmentation","publication_year":2020,"publication_date":"2020-03-27","ids":{"openalex":"https://openalex.org/W3014831329","doi":"https://doi.org/10.1093/bioinformatics/btaa225","mag":"3014831329","pmid":"https://pubmed.ncbi.nlm.nih.gov/32239126"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btaa225","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa225","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/12/3863/33437424/btaa225.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/36/12/3863/33437424/btaa225.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5067084722","display_name":"Mischa Schwendy","orcid":null},"institutions":[{"id":"https://openalex.org/I4210095245","display_name":"Max Planck Institute for Polymer Research","ror":"https://ror.org/00sb7hc59","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210095245"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Mischa Schwendy","raw_affiliation_strings":["Max Planck Institute for Polymer Research , Mainz 55128, Germany"],"affiliations":[{"raw_affiliation_string":"Max Planck Institute for Polymer Research , Mainz 55128, Germany","institution_ids":["https://openalex.org/I4210095245"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5070721944","display_name":"Ronald E. Unger","orcid":"https://orcid.org/0000-0003-2482-9705"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Ronald E Unger","raw_affiliation_strings":["Institute of Pathology , Universit\u00e4tsmedizin-Mainz, Mainz 55131, Germany"],"affiliations":[{"raw_affiliation_string":"Institute of Pathology , Universit\u00e4tsmedizin-Mainz, Mainz 55131, Germany","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5078362785","display_name":"Sapun H. Parekh","orcid":"https://orcid.org/0000-0001-8522-1854"},"institutions":[{"id":"https://openalex.org/I4210095245","display_name":"Max Planck Institute for Polymer Research","ror":"https://ror.org/00sb7hc59","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210095245"]},{"id":"https://openalex.org/I86519309","display_name":"The University of Texas at Austin","ror":"https://ror.org/00hj54h04","country_code":"US","type":"education","lineage":["https://openalex.org/I86519309"]}],"countries":["DE","US"],"is_corresponding":true,"raw_author_name":"Sapun H Parekh","raw_affiliation_strings":["Department of Biomedical Engineering , University of Texas at Austin, Austin, TX 78712, USA","Max Planck Institute for Polymer Research , Mainz 55128, Germany"],"affiliations":[{"raw_affiliation_string":"Department of Biomedical Engineering , University of Texas at Austin, Austin, TX 78712, USA","institution_ids":["https://openalex.org/I86519309"]},{"raw_affiliation_string":"Max Planck Institute for Polymer Research , Mainz 55128, Germany","institution_ids":["https://openalex.org/I4210095245"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5067084722","https://openalex.org/A5078362785"],"corresponding_institution_ids":["https://openalex.org/I4210095245","https://openalex.org/I86519309"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":7.9043,"has_fulltext":false,"cited_by_count":65,"citation_normalized_percentile":{"value":0.97441393,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"36","issue":"12","first_page":"3863","last_page":"3870"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13114","display_name":"Image Processing Techniques and Applications","score":0.9975000023841858,"subfield":{"id":"https://openalex.org/subfields/2214","display_name":"Media Technology"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12874","display_name":"Digital Imaging for Blood Diseases","score":0.994700014591217,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/jaccard-index","display_name":"Jaccard index","score":0.8128422498703003},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7749080657958984},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.7267317771911621},{"id":"https://openalex.org/keywords/segmentation","display_name":"Segmentation","score":0.7119568586349487},{"id":"https://openalex.org/keywords/ground-truth","display_name":"Ground truth","score":0.6689543724060059},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.6241821050643921},{"id":"https://openalex.org/keywords/deep-learning","display_name":"Deep learning","score":0.6228001713752747},{"id":"https://openalex.org/keywords/usable","display_name":"USable","score":0.6171783208847046},{"id":"https://openalex.org/keywords/grayscale","display_name":"Grayscale","score":0.5553421974182129},{"id":"https://openalex.org/keywords/image","display_name":"Image (mathematics)","score":0.4848126471042633},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.45886892080307007},{"id":"https://openalex.org/keywords/image-segmentation","display_name":"Image segmentation","score":0.4306037425994873},{"id":"https://openalex.org/keywords/computer-vision","display_name":"Computer vision","score":0.36639267206192017}],"concepts":[{"id":"https://openalex.org/C203519979","wikidata":"https://www.wikidata.org/wiki/Q865360","display_name":"Jaccard index","level":3,"score":0.8128422498703003},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7749080657958984},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.7267317771911621},{"id":"https://openalex.org/C89600930","wikidata":"https://www.wikidata.org/wiki/Q1423946","display_name":"Segmentation","level":2,"score":0.7119568586349487},{"id":"https://openalex.org/C146849305","wikidata":"https://www.wikidata.org/wiki/Q370766","display_name":"Ground truth","level":2,"score":0.6689543724060059},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.6241821050643921},{"id":"https://openalex.org/C108583219","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep learning","level":2,"score":0.6228001713752747},{"id":"https://openalex.org/C2780615836","wikidata":"https://www.wikidata.org/wiki/Q2471869","display_name":"USable","level":2,"score":0.6171783208847046},{"id":"https://openalex.org/C78201319","wikidata":"https://www.wikidata.org/wiki/Q685727","display_name":"Grayscale","level":3,"score":0.5553421974182129},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.4848126471042633},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.45886892080307007},{"id":"https://openalex.org/C124504099","wikidata":"https://www.wikidata.org/wiki/Q56933","display_name":"Image segmentation","level":3,"score":0.4306037425994873},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.36639267206192017},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D002467","descriptor_name":"Cell Nucleus","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D002467","descriptor_name":"Cell Nucleus","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D002467","descriptor_name":"Cell Nucleus","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008853","descriptor_name":"Microscopy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008853","descriptor_name":"Microscopy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008853","descriptor_name":"Microscopy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btaa225","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa225","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/12/3863/33437424/btaa225.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:32239126","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/32239126","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:7320615","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7320615","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:pure.mpg.de:item_3242774","is_oa":true,"landing_page_url":"http://hdl.handle.net/21.11116/0000-0006-AFFA-C","pdf_url":null,"source":{"id":"https://openalex.org/S4306400654","display_name":"MPG.PuRe (Max Planck Society)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I149899117","host_organization_name":"Max Planck Society","host_organization_lineage":["https://openalex.org/I149899117"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btaa225","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa225","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/12/3863/33437424/btaa225.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G3159459035","display_name":null,"funder_award_id":"F-2008-20190330","funder_id":"https://openalex.org/F4320306196","funder_display_name":"Welch Foundation"}],"funders":[{"id":"https://openalex.org/F4320306196","display_name":"Welch Foundation","ror":"https://ror.org/00np6vq88"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3014831329.pdf","grobid_xml":"https://content.openalex.org/works/W3014831329.grobid-xml"},"referenced_works_count":28,"referenced_works":["https://openalex.org/W639708223","https://openalex.org/W1901129140","https://openalex.org/W1986053522","https://openalex.org/W2019062120","https://openalex.org/W2047584624","https://openalex.org/W2111358200","https://openalex.org/W2112796928","https://openalex.org/W2144144709","https://openalex.org/W2159828012","https://openalex.org/W2167279371","https://openalex.org/W2194775991","https://openalex.org/W2342840547","https://openalex.org/W2581082771","https://openalex.org/W2604272474","https://openalex.org/W2612118981","https://openalex.org/W2758694956","https://openalex.org/W2794777010","https://openalex.org/W2797749376","https://openalex.org/W2799093543","https://openalex.org/W2883426678","https://openalex.org/W2886281300","https://openalex.org/W2912067199","https://openalex.org/W2949902333","https://openalex.org/W2961912654","https://openalex.org/W6687483927","https://openalex.org/W6704559304","https://openalex.org/W6749795962","https://openalex.org/W6967010625"],"related_works":["https://openalex.org/W4254879869","https://openalex.org/W3022576529","https://openalex.org/W2628526247","https://openalex.org/W2596401011","https://openalex.org/W2913569734","https://openalex.org/W4401519790","https://openalex.org/W2702570413","https://openalex.org/W3127229356","https://openalex.org/W2901284887","https://openalex.org/W2294604808"],"abstract_inverted_index":{"The":[0],"dataset":[1],"is":[2],"freely":[3],"available":[4],"(https://edmond.mpdl.mpg.de/imeji/collection/l45s16atmi6Aa4sI?q=).":[5],"Using":[6],"a":[7,23,31],"Mask":[8],"R-CNN":[9],"implementation,":[10],"we":[11],"demonstrate":[12],"automated":[13],"segmentation":[14],"of":[15,27],"cells":[16],"and":[17],"nuclei":[18],"from":[19],"brightfield":[20],"images":[21],"with":[22],"mean":[24],"average":[25],"precision":[26],"61.6":[28],"%":[29],"at":[30],"Jaccard":[32],"Index":[33],"above":[34],"0.5.":[35]},"counts_by_year":[{"year":2026,"cited_by_count":5},{"year":2025,"cited_by_count":15},{"year":2024,"cited_by_count":10},{"year":2023,"cited_by_count":15},{"year":2022,"cited_by_count":10},{"year":2021,"cited_by_count":10}],"updated_date":"2026-04-09T08:11:56.329763","created_date":"2025-10-10T00:00:00"}
