{"id":"https://openalex.org/W3013632913","doi":"https://doi.org/10.1093/bioinformatics/btaa216","title":"A parallelized strategy for epistasis analysis based on Empirical Bayesian Elastic Net models","display_name":"A parallelized strategy for epistasis analysis based on Empirical Bayesian Elastic Net models","publication_year":2020,"publication_date":"2020-03-26","ids":{"openalex":"https://openalex.org/W3013632913","doi":"https://doi.org/10.1093/bioinformatics/btaa216","mag":"3013632913","pmid":"https://pubmed.ncbi.nlm.nih.gov/32227194"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btaa216","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa216","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/12/3803/33437380/btaa216.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/36/12/3803/33437380/btaa216.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5031945784","display_name":"Jia Wen","orcid":"https://orcid.org/0000-0003-3273-7704"},"institutions":[{"id":"https://openalex.org/I114027177","display_name":"University of North Carolina at Chapel Hill","ror":"https://ror.org/0130frc33","country_code":"US","type":"education","lineage":["https://openalex.org/I114027177"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jia Wen","raw_affiliation_strings":["Department of Genetics , University of North Carolina at Chapel Hill, Chapel Hill, NC 27514, USA"],"affiliations":[{"raw_affiliation_string":"Department of Genetics , University of North Carolina at Chapel Hill, Chapel Hill, NC 27514, USA","institution_ids":["https://openalex.org/I114027177"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5081135152","display_name":"Colby T. Ford","orcid":"https://orcid.org/0000-0002-7859-3622"},"institutions":[{"id":"https://openalex.org/I102149020","display_name":"University of North Carolina at Charlotte","ror":"https://ror.org/04dawnj30","country_code":"US","type":"education","lineage":["https://openalex.org/I102149020"]},{"id":"https://openalex.org/I4210118410","display_name":"Institut th\u00e9matique G\u00e9n\u00e9tique, g\u00e9nomique et bioinformatique","ror":"https://ror.org/01rfstj90","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488","https://openalex.org/I4210118410"]}],"countries":["FR","US"],"is_corresponding":false,"raw_author_name":"Colby T Ford","raw_affiliation_strings":["Department of Bioinformatics and Genomics , College of Computing and Informatics","School of Data Science , University of North Carolina at Charlotte, Charlotte, NC 28223, USA"],"affiliations":[{"raw_affiliation_string":"Department of Bioinformatics and Genomics , College of Computing and Informatics","institution_ids":["https://openalex.org/I4210118410"]},{"raw_affiliation_string":"School of Data Science , University of North Carolina at Charlotte, Charlotte, NC 28223, USA","institution_ids":["https://openalex.org/I102149020"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5022518932","display_name":"Daniel Janies","orcid":"https://orcid.org/0000-0002-7890-9906"},"institutions":[{"id":"https://openalex.org/I4210118410","display_name":"Institut th\u00e9matique G\u00e9n\u00e9tique, g\u00e9nomique et bioinformatique","ror":"https://ror.org/01rfstj90","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488","https://openalex.org/I4210118410"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Daniel Janies","raw_affiliation_strings":["Department of Bioinformatics and Genomics , College of Computing and Informatics"],"affiliations":[{"raw_affiliation_string":"Department of Bioinformatics and Genomics , College of Computing and Informatics","institution_ids":["https://openalex.org/I4210118410"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5103054154","display_name":"Xinghua Shi","orcid":"https://orcid.org/0000-0003-4662-3177"},"institutions":[{"id":"https://openalex.org/I84392919","display_name":"Temple University","ror":"https://ror.org/00kx1jb78","country_code":"US","type":"education","lineage":["https://openalex.org/I84392919"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Xinghua Shi","raw_affiliation_strings":["Department of Computer and Information Sciences , Temple University, Philadelphia, PA 19122, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer and Information Sciences , Temple University, Philadelphia, PA 19122, USA","institution_ids":["https://openalex.org/I84392919"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5103054154"],"corresponding_institution_ids":["https://openalex.org/I84392919"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.7174,"has_fulltext":true,"cited_by_count":4,"citation_normalized_percentile":{"value":0.73361939,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"36","issue":"12","first_page":"3803","last_page":"3810"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11468","display_name":"Genetic Mapping and Diversity in Plants and Animals","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11468","display_name":"Genetic Mapping and Diversity in Plants and Animals","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9969000220298767,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11229","display_name":"Genetics and Plant Breeding","score":0.9940999746322632,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/epistasis","display_name":"Epistasis","score":0.9428015947341919},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7239049077033997},{"id":"https://openalex.org/keywords/bayesian-probability","display_name":"Bayesian probability","score":0.4761483669281006},{"id":"https://openalex.org/keywords/curse-of-dimensionality","display_name":"Curse of dimensionality","score":0.4346412718296051},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.4331151247024536},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4007921814918518},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.38505101203918457},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.18862837553024292},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.15335851907730103},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.0984204113483429}],"concepts":[{"id":"https://openalex.org/C61727976","wikidata":"https://www.wikidata.org/wiki/Q751748","display_name":"Epistasis","level":3,"score":0.9428015947341919},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7239049077033997},{"id":"https://openalex.org/C107673813","wikidata":"https://www.wikidata.org/wiki/Q812534","display_name":"Bayesian probability","level":2,"score":0.4761483669281006},{"id":"https://openalex.org/C111030470","wikidata":"https://www.wikidata.org/wiki/Q1430460","display_name":"Curse of dimensionality","level":2,"score":0.4346412718296051},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.4331151247024536},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4007921814918518},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.38505101203918457},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.18862837553024292},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.15335851907730103},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0984204113483429}],"mesh":[{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004843","descriptor_name":"Epistasis, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004843","descriptor_name":"Epistasis, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004843","descriptor_name":"Epistasis, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btaa216","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa216","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/12/3803/33437380/btaa216.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:32227194","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/32227194","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:7320619","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7320619","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btaa216","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa216","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/12/3803/33437380/btaa216.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G8287464903","display_name":null,"funder_award_id":"R15HG009565","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320333028","display_name":"University of North Carolina at Charlotte","ror":"https://ror.org/04dawnj30"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3013632913.pdf","grobid_xml":"https://content.openalex.org/works/W3013632913.grobid-xml"},"referenced_works_count":56,"referenced_works":["https://openalex.org/W990924570","https://openalex.org/W1510646616","https://openalex.org/W1542772707","https://openalex.org/W1826688396","https://openalex.org/W1979450315","https://openalex.org/W1980175560","https://openalex.org/W1980341945","https://openalex.org/W1981704956","https://openalex.org/W1981723690","https://openalex.org/W1987620105","https://openalex.org/W2007334402","https://openalex.org/W2012069179","https://openalex.org/W2015523078","https://openalex.org/W2017406452","https://openalex.org/W2022821295","https://openalex.org/W2024799373","https://openalex.org/W2035300844","https://openalex.org/W2041170649","https://openalex.org/W2069320285","https://openalex.org/W2075745677","https://openalex.org/W2083413750","https://openalex.org/W2085164119","https://openalex.org/W2085800019","https://openalex.org/W2090713084","https://openalex.org/W2096694006","https://openalex.org/W2100697281","https://openalex.org/W2110559492","https://openalex.org/W2110808585","https://openalex.org/W2118108490","https://openalex.org/W2130498969","https://openalex.org/W2135046866","https://openalex.org/W2135107356","https://openalex.org/W2139674591","https://openalex.org/W2140249224","https://openalex.org/W2140514146","https://openalex.org/W2144966952","https://openalex.org/W2145022912","https://openalex.org/W2145750053","https://openalex.org/W2155078868","https://openalex.org/W2156200251","https://openalex.org/W2161633633","https://openalex.org/W2166787058","https://openalex.org/W2170133641","https://openalex.org/W2319195321","https://openalex.org/W2542459869","https://openalex.org/W2568174673","https://openalex.org/W2594760713","https://openalex.org/W2616923975","https://openalex.org/W2626606138","https://openalex.org/W2765601566","https://openalex.org/W2922369430","https://openalex.org/W2949625879","https://openalex.org/W2950718985","https://openalex.org/W2952835495","https://openalex.org/W3105952390","https://openalex.org/W6682691165"],"related_works":["https://openalex.org/W1547817677","https://openalex.org/W2615678788","https://openalex.org/W2023460495","https://openalex.org/W2109954095","https://openalex.org/W1967902778","https://openalex.org/W1981509636","https://openalex.org/W3139253026","https://openalex.org/W3035525216","https://openalex.org/W2157308673","https://openalex.org/W2099041096"],"abstract_inverted_index":{"The":[0],"software":[1],"is":[2],"available":[3],"at":[4],"github.com/shilab/parEBEN.":[5]},"counts_by_year":[{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
