{"id":"https://openalex.org/W3009754656","doi":"https://doi.org/10.1093/bioinformatics/btaa156","title":"SCLpred-EMS: subcellular localization prediction of endomembrane system and secretory pathway proteins by Deep N-to-1 Convolutional Neural Networks","display_name":"SCLpred-EMS: subcellular localization prediction of endomembrane system and secretory pathway proteins by Deep N-to-1 Convolutional Neural Networks","publication_year":2020,"publication_date":"2020-03-02","ids":{"openalex":"https://openalex.org/W3009754656","doi":"https://doi.org/10.1093/bioinformatics/btaa156","mag":"3009754656","pmid":"https://pubmed.ncbi.nlm.nih.gov/32142105"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btaa156","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa156","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/11/3343/33329254/btaa156.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/36/11/3343/33329254/btaa156.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5065854767","display_name":"Manaz Kaleel","orcid":"https://orcid.org/0000-0001-9043-0802"},"institutions":[{"id":"https://openalex.org/I100930933","display_name":"University College Dublin","ror":"https://ror.org/05m7pjf47","country_code":"IE","type":"education","lineage":["https://openalex.org/I100930933"]}],"countries":["IE"],"is_corresponding":false,"raw_author_name":"Manaz Kaleel","raw_affiliation_strings":["School of Computer Science","UCD Institute for Discovery , University College Dublin, Dublin, Ireland"],"affiliations":[{"raw_affiliation_string":"School of Computer Science","institution_ids":[]},{"raw_affiliation_string":"UCD Institute for Discovery , University College Dublin, Dublin, Ireland","institution_ids":["https://openalex.org/I100930933"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036242153","display_name":"Yandan Zheng","orcid":"https://orcid.org/0000-0002-2290-5789"},"institutions":[{"id":"https://openalex.org/I37796252","display_name":"Beijing University of Technology","ror":"https://ror.org/037b1pp87","country_code":"CN","type":"education","lineage":["https://openalex.org/I37796252"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yandan Zheng","raw_affiliation_strings":["Beijing-Dublin International College , Beijing University of Technology, Chaoyang, China"],"affiliations":[{"raw_affiliation_string":"Beijing-Dublin International College , Beijing University of Technology, Chaoyang, China","institution_ids":["https://openalex.org/I37796252"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101461174","display_name":"Jialiang Chen","orcid":"https://orcid.org/0009-0008-9369-9979"},"institutions":[{"id":"https://openalex.org/I37796252","display_name":"Beijing University of Technology","ror":"https://ror.org/037b1pp87","country_code":"CN","type":"education","lineage":["https://openalex.org/I37796252"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jialiang Chen","raw_affiliation_strings":["Beijing-Dublin International College , Beijing University of Technology, Chaoyang, China"],"affiliations":[{"raw_affiliation_string":"Beijing-Dublin International College , Beijing University of Technology, Chaoyang, China","institution_ids":["https://openalex.org/I37796252"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027139269","display_name":"Xuanming Feng","orcid":null},"institutions":[{"id":"https://openalex.org/I37796252","display_name":"Beijing University of Technology","ror":"https://ror.org/037b1pp87","country_code":"CN","type":"education","lineage":["https://openalex.org/I37796252"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xuanming Feng","raw_affiliation_strings":["Beijing-Dublin International College , Beijing University of Technology, Chaoyang, China"],"affiliations":[{"raw_affiliation_string":"Beijing-Dublin International College , Beijing University of Technology, Chaoyang, China","institution_ids":["https://openalex.org/I37796252"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082032382","display_name":"Jeremy C. Simpson","orcid":"https://orcid.org/0000-0002-7956-7805"},"institutions":[{"id":"https://openalex.org/I100930933","display_name":"University College Dublin","ror":"https://ror.org/05m7pjf47","country_code":"IE","type":"education","lineage":["https://openalex.org/I100930933"]},{"id":"https://openalex.org/I4210152127","display_name":"Conway School of Landscape Design","ror":"https://ror.org/04q7y8a54","country_code":"US","type":"education","lineage":["https://openalex.org/I4210152127"]}],"countries":["IE","US"],"is_corresponding":false,"raw_author_name":"Jeremy C Simpson","raw_affiliation_strings":["Conway Institute of Biomolecular and Biomedical Research","School of Biology and Environmental Science , University College Dublin, Dublin, Ireland"],"affiliations":[{"raw_affiliation_string":"Conway Institute of Biomolecular and Biomedical Research","institution_ids":["https://openalex.org/I4210152127"]},{"raw_affiliation_string":"School of Biology and Environmental Science , University College Dublin, Dublin, Ireland","institution_ids":["https://openalex.org/I100930933"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016630267","display_name":"Gianluca Pollastri","orcid":"https://orcid.org/0000-0002-5825-4949"},"institutions":[{"id":"https://openalex.org/I100930933","display_name":"University College Dublin","ror":"https://ror.org/05m7pjf47","country_code":"IE","type":"education","lineage":["https://openalex.org/I100930933"]}],"countries":["IE"],"is_corresponding":false,"raw_author_name":"Gianluca Pollastri","raw_affiliation_strings":["School of Computer Science","UCD Institute for Discovery , University College Dublin, Dublin, Ireland"],"affiliations":[{"raw_affiliation_string":"School of Computer Science","institution_ids":[]},{"raw_affiliation_string":"UCD Institute for Discovery , University College Dublin, Dublin, Ireland","institution_ids":["https://openalex.org/I100930933"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5061456583","display_name":"Catherine Mooney","orcid":"https://orcid.org/0000-0002-7696-1364"},"institutions":[{"id":"https://openalex.org/I37796252","display_name":"Beijing University of Technology","ror":"https://ror.org/037b1pp87","country_code":"CN","type":"education","lineage":["https://openalex.org/I37796252"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Catherine Mooney","raw_affiliation_strings":["Beijing-Dublin International College , Beijing University of Technology, Chaoyang, China","School of Computer Science"],"affiliations":[{"raw_affiliation_string":"Beijing-Dublin International College , Beijing University of Technology, Chaoyang, China","institution_ids":["https://openalex.org/I37796252"]},{"raw_affiliation_string":"School of Computer Science","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5061456583"],"corresponding_institution_ids":["https://openalex.org/I37796252"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":1.7518,"has_fulltext":false,"cited_by_count":36,"citation_normalized_percentile":{"value":0.8473707,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":96,"max":99},"biblio":{"volume":"36","issue":"11","first_page":"3343","last_page":"3349"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13326","display_name":"Biochemical and Structural Characterization","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9983999729156494,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/endomembrane-system","display_name":"Endomembrane system","score":0.9193682670593262},{"id":"https://openalex.org/keywords/subcellular-localization","display_name":"Subcellular localization","score":0.8097659349441528},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6779370307922363},{"id":"https://openalex.org/keywords/convolutional-neural-network","display_name":"Convolutional neural network","score":0.5919803380966187},{"id":"https://openalex.org/keywords/artificial-neural-network","display_name":"Artificial neural network","score":0.526379406452179},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5060779452323914},{"id":"https://openalex.org/keywords/protein-subcellular-localization-prediction","display_name":"Protein subcellular localization prediction","score":0.4604618549346924},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.38020259141921997},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.23792174458503723},{"id":"https://openalex.org/keywords/cell-biology","display_name":"Cell biology","score":0.13674360513687134},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.11531844735145569},{"id":"https://openalex.org/keywords/golgi-apparatus","display_name":"Golgi apparatus","score":0.0949658751487732},{"id":"https://openalex.org/keywords/endoplasmic-reticulum","display_name":"Endoplasmic reticulum","score":0.075034499168396}],"concepts":[{"id":"https://openalex.org/C206052861","wikidata":"https://www.wikidata.org/wiki/Q899827","display_name":"Endomembrane system","level":4,"score":0.9193682670593262},{"id":"https://openalex.org/C2776879804","wikidata":"https://www.wikidata.org/wiki/Q7630919","display_name":"Subcellular localization","level":3,"score":0.8097659349441528},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6779370307922363},{"id":"https://openalex.org/C81363708","wikidata":"https://www.wikidata.org/wiki/Q17084460","display_name":"Convolutional neural network","level":2,"score":0.5919803380966187},{"id":"https://openalex.org/C50644808","wikidata":"https://www.wikidata.org/wiki/Q192776","display_name":"Artificial neural network","level":2,"score":0.526379406452179},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5060779452323914},{"id":"https://openalex.org/C140051345","wikidata":"https://www.wikidata.org/wiki/Q7251501","display_name":"Protein subcellular localization prediction","level":3,"score":0.4604618549346924},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.38020259141921997},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.23792174458503723},{"id":"https://openalex.org/C95444343","wikidata":"https://www.wikidata.org/wiki/Q7141","display_name":"Cell biology","level":1,"score":0.13674360513687134},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.11531844735145569},{"id":"https://openalex.org/C119062480","wikidata":"https://www.wikidata.org/wiki/Q83181","display_name":"Golgi apparatus","level":3,"score":0.0949658751487732},{"id":"https://openalex.org/C158617107","wikidata":"https://www.wikidata.org/wiki/Q79927","display_name":"Endoplasmic reticulum","level":2,"score":0.075034499168396},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C190062978","wikidata":"https://www.wikidata.org/wiki/Q79899","display_name":"Cytoplasm","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D055571","descriptor_name":"Secretory Pathway","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D055571","descriptor_name":"Secretory Pathway","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D055571","descriptor_name":"Secretory Pathway","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btaa156","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa156","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/11/3343/33329254/btaa156.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:32142105","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/32142105","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:researchrepository.ucd.ie:10197/12182","is_oa":true,"landing_page_url":"http://hdl.handle.net/10197/12182","pdf_url":"http://hdl.handle.net/10197/12182","source":{"id":"https://openalex.org/S4306402280","display_name":"Research Repository UCD (University College Dublin)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I100930933","host_organization_name":"University College Dublin","host_organization_lineage":["https://openalex.org/I100930933"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Journal Article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btaa156","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa156","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/11/3343/33329254/btaa156.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G5834093015","display_name":null,"funder_award_id":"GOIPG/2014/603","funder_id":"https://openalex.org/F4320321056","funder_display_name":"Irish Research Council"}],"funders":[{"id":"https://openalex.org/F4320321056","display_name":"Irish Research Council","ror":"https://ror.org/051xex213"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3009754656.pdf","grobid_xml":"https://content.openalex.org/works/W3009754656.grobid-xml"},"referenced_works_count":23,"referenced_works":["https://openalex.org/W1228335733","https://openalex.org/W1486817521","https://openalex.org/W1949937941","https://openalex.org/W1966526845","https://openalex.org/W1973253766","https://openalex.org/W2057583586","https://openalex.org/W2103132055","https://openalex.org/W2107432340","https://openalex.org/W2111127373","https://openalex.org/W2116572072","https://openalex.org/W2120671490","https://openalex.org/W2124056645","https://openalex.org/W2139333712","https://openalex.org/W2158714788","https://openalex.org/W2730472814","https://openalex.org/W2776525063","https://openalex.org/W2801813992","https://openalex.org/W2912990441","https://openalex.org/W2965945358","https://openalex.org/W2969644707","https://openalex.org/W2993302057","https://openalex.org/W3136918052","https://openalex.org/W6627936258"],"related_works":["https://openalex.org/W2351398203","https://openalex.org/W4205775722","https://openalex.org/W4366498163","https://openalex.org/W2773309700","https://openalex.org/W2402975874","https://openalex.org/W3215969703","https://openalex.org/W4389024241","https://openalex.org/W2384565783","https://openalex.org/W2406531951","https://openalex.org/W2359358093"],"abstract_inverted_index":{"catherine.mooney@ucd.ie.":[0]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":10},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":4},{"year":2021,"cited_by_count":10},{"year":2020,"cited_by_count":4}],"updated_date":"2026-03-13T16:22:10.518609","created_date":"2025-10-10T00:00:00"}
