{"id":"https://openalex.org/W3118960334","doi":"https://doi.org/10.1093/bioinformatics/btaa1091","title":"The iPPI-DB initiative: a community-centered database of protein\u2013protein interaction modulators","display_name":"The iPPI-DB initiative: a community-centered database of protein\u2013protein interaction modulators","publication_year":2020,"publication_date":"2020-12-23","ids":{"openalex":"https://openalex.org/W3118960334","doi":"https://doi.org/10.1093/bioinformatics/btaa1091","mag":"3118960334","pmid":"https://pubmed.ncbi.nlm.nih.gov/33416858"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btaa1091","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa1091","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/37/1/89/37005885/btaa1091.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/37/1/89/37005885/btaa1091.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5078197677","display_name":"Rachel Torchet","orcid":"https://orcid.org/0000-0002-2306-5566"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I157536573","display_name":"Institut Pasteur","ror":"https://ror.org/0495fxg12","country_code":"FR","type":"nonprofit","lineage":["https://openalex.org/I157536573"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Rachel Torchet","raw_affiliation_strings":["Hub de Bioinformatique et Biostatistique D\u00e9partement Biologie Computationnelle, Institut Pasteur, USR 3756 CNRS , Paris 75015, France"],"affiliations":[{"raw_affiliation_string":"Hub de Bioinformatique et Biostatistique D\u00e9partement Biologie Computationnelle, Institut Pasteur, USR 3756 CNRS , Paris 75015, France","institution_ids":["https://openalex.org/I157536573","https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5030610216","display_name":"Karen Druart","orcid":"https://orcid.org/0000-0002-9572-7741"},"institutions":[{"id":"https://openalex.org/I157536573","display_name":"Institut Pasteur","ror":"https://ror.org/0495fxg12","country_code":"FR","type":"nonprofit","lineage":["https://openalex.org/I157536573"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Karen Druart","raw_affiliation_strings":["Department of Structural Biology and Chemistry, Institut Pasteur , Paris 75015, France"],"affiliations":[{"raw_affiliation_string":"Department of Structural Biology and Chemistry, Institut Pasteur , Paris 75015, France","institution_ids":["https://openalex.org/I157536573"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5006957048","display_name":"Luis Checa Ruano","orcid":"https://orcid.org/0000-0001-6437-5379"},"institutions":[{"id":"https://openalex.org/I157536573","display_name":"Institut Pasteur","ror":"https://ror.org/0495fxg12","country_code":"FR","type":"nonprofit","lineage":["https://openalex.org/I157536573"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Luis Checa Ruano","raw_affiliation_strings":["Department of Structural Biology and Chemistry, Institut Pasteur , Paris 75015, France"],"affiliations":[{"raw_affiliation_string":"Department of Structural Biology and Chemistry, Institut Pasteur , Paris 75015, France","institution_ids":["https://openalex.org/I157536573"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058642213","display_name":"Alexandra Moine-Franel","orcid":"https://orcid.org/0000-0002-4421-628X"},"institutions":[{"id":"https://openalex.org/I157536573","display_name":"Institut Pasteur","ror":"https://ror.org/0495fxg12","country_code":"FR","type":"nonprofit","lineage":["https://openalex.org/I157536573"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Alexandra Moine-Franel","raw_affiliation_strings":["Department of Structural Biology and Chemistry, Institut Pasteur , Paris 75015, France"],"affiliations":[{"raw_affiliation_string":"Department of Structural Biology and Chemistry, Institut Pasteur , Paris 75015, France","institution_ids":["https://openalex.org/I157536573"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090565093","display_name":"H\u00e9l\u00e8ne Borges","orcid":"https://orcid.org/0000-0001-6769-1836"},"institutions":[{"id":"https://openalex.org/I157536573","display_name":"Institut Pasteur","ror":"https://ror.org/0495fxg12","country_code":"FR","type":"nonprofit","lineage":["https://openalex.org/I157536573"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"H\u00e9l\u00e8ne Borges","raw_affiliation_strings":["Department of Structural Biology and Chemistry, Institut Pasteur , Paris 75015, France"],"affiliations":[{"raw_affiliation_string":"Department of Structural Biology and Chemistry, Institut Pasteur , Paris 75015, France","institution_ids":["https://openalex.org/I157536573"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004627077","display_name":"Olivia Doppelt\u2010Azeroual","orcid":"https://orcid.org/0000-0001-5451-5171"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I157536573","display_name":"Institut Pasteur","ror":"https://ror.org/0495fxg12","country_code":"FR","type":"nonprofit","lineage":["https://openalex.org/I157536573"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Olivia Doppelt-Azeroual","raw_affiliation_strings":["Hub de Bioinformatique et Biostatistique D\u00e9partement Biologie Computationnelle, Institut Pasteur, USR 3756 CNRS , Paris 75015, France"],"affiliations":[{"raw_affiliation_string":"Hub de Bioinformatique et Biostatistique D\u00e9partement Biologie Computationnelle, Institut Pasteur, USR 3756 CNRS , Paris 75015, France","institution_ids":["https://openalex.org/I157536573","https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058120731","display_name":"Bryan Brancotte","orcid":"https://orcid.org/0000-0001-8669-5525"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I157536573","display_name":"Institut Pasteur","ror":"https://ror.org/0495fxg12","country_code":"FR","type":"nonprofit","lineage":["https://openalex.org/I157536573"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Bryan Brancotte","raw_affiliation_strings":["Hub de Bioinformatique et Biostatistique D\u00e9partement Biologie Computationnelle, Institut Pasteur, USR 3756 CNRS , Paris 75015, France"],"affiliations":[{"raw_affiliation_string":"Hub de Bioinformatique et Biostatistique D\u00e9partement Biologie Computationnelle, Institut Pasteur, USR 3756 CNRS , Paris 75015, France","institution_ids":["https://openalex.org/I157536573","https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091794640","display_name":"Fabien Mareuil","orcid":"https://orcid.org/0000-0002-3832-9157"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I157536573","display_name":"Institut Pasteur","ror":"https://ror.org/0495fxg12","country_code":"FR","type":"nonprofit","lineage":["https://openalex.org/I157536573"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Fabien Mareuil","raw_affiliation_strings":["Hub de Bioinformatique et Biostatistique D\u00e9partement Biologie Computationnelle, Institut Pasteur, USR 3756 CNRS , Paris 75015, France"],"affiliations":[{"raw_affiliation_string":"Hub de Bioinformatique et Biostatistique D\u00e9partement Biologie Computationnelle, Institut Pasteur, USR 3756 CNRS , Paris 75015, France","institution_ids":["https://openalex.org/I157536573","https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5024276029","display_name":"Micha\u00ebl Nilges","orcid":"https://orcid.org/0000-0002-1451-8092"},"institutions":[{"id":"https://openalex.org/I157536573","display_name":"Institut Pasteur","ror":"https://ror.org/0495fxg12","country_code":"FR","type":"nonprofit","lineage":["https://openalex.org/I157536573"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Michael Nilges","raw_affiliation_strings":["Department of Structural Biology and Chemistry, Institut Pasteur , Paris 75015, France"],"affiliations":[{"raw_affiliation_string":"Department of Structural Biology and Chemistry, Institut Pasteur , Paris 75015, France","institution_ids":["https://openalex.org/I157536573"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5057666741","display_name":"Herv\u00e9 M\u00e9nager","orcid":"https://orcid.org/0000-0002-7552-1009"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I157536573","display_name":"Institut Pasteur","ror":"https://ror.org/0495fxg12","country_code":"FR","type":"nonprofit","lineage":["https://openalex.org/I157536573"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Herv\u00e9 M\u00e9nager","raw_affiliation_strings":["Hub de Bioinformatique et Biostatistique D\u00e9partement Biologie Computationnelle, Institut Pasteur, USR 3756 CNRS , Paris 75015, France"],"affiliations":[{"raw_affiliation_string":"Hub de Bioinformatique et Biostatistique D\u00e9partement Biologie Computationnelle, Institut Pasteur, USR 3756 CNRS , Paris 75015, France","institution_ids":["https://openalex.org/I157536573","https://openalex.org/I1294671590"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5064154680","display_name":"Olivier Sp\u00e9randio","orcid":"https://orcid.org/0000-0001-6610-2729"},"institutions":[{"id":"https://openalex.org/I157536573","display_name":"Institut Pasteur","ror":"https://ror.org/0495fxg12","country_code":"FR","type":"nonprofit","lineage":["https://openalex.org/I157536573"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Olivier Sperandio","raw_affiliation_strings":["Department of Structural Biology and Chemistry, Institut Pasteur , Paris 75015, France"],"affiliations":[{"raw_affiliation_string":"Department of Structural Biology and Chemistry, Institut Pasteur , Paris 75015, France","institution_ids":["https://openalex.org/I157536573"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":11,"corresponding_author_ids":["https://openalex.org/A5064154680"],"corresponding_institution_ids":["https://openalex.org/I157536573"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3403,"currency":"EUR","value_usd":3670},"fwci":4.0464,"has_fulltext":true,"cited_by_count":47,"citation_normalized_percentile":{"value":0.95023768,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":98,"max":100},"biblio":{"volume":"37","issue":"1","first_page":"89","last_page":"96"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9968000054359436,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9968000054359436,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9919000267982483,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10252","display_name":"Microbial Natural Products and Biosynthesis","score":0.967199981212616,"subfield":{"id":"https://openalex.org/subfields/2736","display_name":"Pharmacology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5664064288139343},{"id":"https://openalex.org/keywords/protein\u2013protein-interaction","display_name":"Protein\u2013protein interaction","score":0.44718843698501587},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.36853066086769104},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.19991183280944824},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.08480244874954224}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5664064288139343},{"id":"https://openalex.org/C11804247","wikidata":"https://www.wikidata.org/wiki/Q896177","display_name":"Protein\u2013protein interaction","level":2,"score":0.44718843698501587},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.36853066086769104},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.19991183280944824},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.08480244874954224}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btaa1091","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa1091","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/37/1/89/37005885/btaa1091.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:33416858","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/33416858","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:8034526","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8034526","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:HAL:hal-03252561v1","is_oa":false,"landing_page_url":"https://hal.science/hal-03252561","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics, 2021, 37 (1), pp.89-96. ⟨10.1093/bioinformatics/btaa1091⟩","raw_type":"Journal articles"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btaa1091","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa1091","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/37/1/89/37005885/btaa1091.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Partnerships for the goals","score":0.4699999988079071,"id":"https://metadata.un.org/sdg/17"}],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3118960334.pdf","grobid_xml":"https://content.openalex.org/works/W3118960334.grobid-xml"},"referenced_works_count":37,"referenced_works":["https://openalex.org/W1944929196","https://openalex.org/W1989277387","https://openalex.org/W2038359277","https://openalex.org/W2041971736","https://openalex.org/W2052214665","https://openalex.org/W2056283033","https://openalex.org/W2096525273","https://openalex.org/W2100773022","https://openalex.org/W2121666644","https://openalex.org/W2130479394","https://openalex.org/W2135732933","https://openalex.org/W2155721378","https://openalex.org/W2157253968","https://openalex.org/W2169678694","https://openalex.org/W2224056471","https://openalex.org/W2227799525","https://openalex.org/W2273267066","https://openalex.org/W2338762894","https://openalex.org/W2539166933","https://openalex.org/W2558643140","https://openalex.org/W2558999090","https://openalex.org/W2724155158","https://openalex.org/W2765384588","https://openalex.org/W2767891136","https://openalex.org/W2767957539","https://openalex.org/W2779144909","https://openalex.org/W2899070097","https://openalex.org/W2917207851","https://openalex.org/W2950595506","https://openalex.org/W3023019135","https://openalex.org/W3136918052","https://openalex.org/W3211402536","https://openalex.org/W4212919921","https://openalex.org/W4234797890","https://openalex.org/W6740188257","https://openalex.org/W6813094581","https://openalex.org/W6825567165"],"related_works":["https://openalex.org/W2899084033","https://openalex.org/W2748952813","https://openalex.org/W2099982459","https://openalex.org/W2109298101","https://openalex.org/W2007507741","https://openalex.org/W2159860826","https://openalex.org/W3192210502","https://openalex.org/W1981737222","https://openalex.org/W1569394480","https://openalex.org/W1998222399"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2026,"cited_by_count":5},{"year":2025,"cited_by_count":7},{"year":2024,"cited_by_count":7},{"year":2023,"cited_by_count":10},{"year":2022,"cited_by_count":8},{"year":2021,"cited_by_count":10}],"updated_date":"2026-04-21T08:09:41.155169","created_date":"2025-10-10T00:00:00"}