{"id":"https://openalex.org/W3008215845","doi":"https://doi.org/10.1093/bioinformatics/btaa106","title":"SSIF: Subsumption-based Sub-term Inference Framework to audit Gene Ontology","display_name":"SSIF: Subsumption-based Sub-term Inference Framework to audit Gene Ontology","publication_year":2020,"publication_date":"2020-02-12","ids":{"openalex":"https://openalex.org/W3008215845","doi":"https://doi.org/10.1093/bioinformatics/btaa106","mag":"3008215845","pmid":"https://pubmed.ncbi.nlm.nih.gov/32065617"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btaa106","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa106","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/10/3207/33204161/btaa106.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/36/10/3207/33204161/btaa106.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5083171882","display_name":"Rashmie Abeysinghe","orcid":"https://orcid.org/0000-0001-9297-9540"},"institutions":[{"id":"https://openalex.org/I919571938","display_name":"The University of Texas Health Science Center at Houston","ror":"https://ror.org/03gds6c39","country_code":"US","type":"education","lineage":["https://openalex.org/I919571938"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Rashmie Abeysinghe","raw_affiliation_strings":["Department of Computer Science","School of Biomedical Informatics , University of Texas Health Science Center at Houston, Houston, TX 77030, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science","institution_ids":[]},{"raw_affiliation_string":"School of Biomedical Informatics , University of Texas Health Science Center at Houston, Houston, TX 77030, USA","institution_ids":["https://openalex.org/I919571938"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026865750","display_name":"Eugene W. Hinderer","orcid":"https://orcid.org/0000-0001-8045-7083"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Eugene W Hinderer","raw_affiliation_strings":["Department of Molecular and Cellular Biochemistry"],"affiliations":[{"raw_affiliation_string":"Department of Molecular and Cellular Biochemistry","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040212698","display_name":"Hunter Moseley","orcid":"https://orcid.org/0000-0003-3995-5368"},"institutions":[{"id":"https://openalex.org/I143302722","display_name":"University of Kentucky","ror":"https://ror.org/02k3smh20","country_code":"US","type":"education","lineage":["https://openalex.org/I143302722"]},{"id":"https://openalex.org/I2802239656","display_name":"Markey Cancer Center","ror":"https://ror.org/01dhvva97","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1285210727","https://openalex.org/I2802239656"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Hunter N B Moseley","raw_affiliation_strings":["Center for Environmental and Systems Biochemistry , University of Kentucky, Lexington, KY 40506, USA","Department of Molecular and Cellular Biochemistry","Institute for Biomedical Informatics","Markey Cancer Center"],"affiliations":[{"raw_affiliation_string":"Center for Environmental and Systems Biochemistry , University of Kentucky, Lexington, KY 40506, USA","institution_ids":["https://openalex.org/I143302722"]},{"raw_affiliation_string":"Department of Molecular and Cellular Biochemistry","institution_ids":[]},{"raw_affiliation_string":"Institute for Biomedical Informatics","institution_ids":[]},{"raw_affiliation_string":"Markey Cancer Center","institution_ids":["https://openalex.org/I2802239656"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5049834185","display_name":"Licong Cui","orcid":"https://orcid.org/0000-0001-5549-8780"},"institutions":[{"id":"https://openalex.org/I919571938","display_name":"The University of Texas Health Science Center at Houston","ror":"https://ror.org/03gds6c39","country_code":"US","type":"education","lineage":["https://openalex.org/I919571938"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Licong Cui","raw_affiliation_strings":["School of Biomedical Informatics , University of Texas Health Science Center at Houston, Houston, TX 77030, USA"],"affiliations":[{"raw_affiliation_string":"School of Biomedical Informatics , University of Texas Health Science Center at Houston, Houston, TX 77030, USA","institution_ids":["https://openalex.org/I919571938"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5049834185"],"corresponding_institution_ids":["https://openalex.org/I919571938"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.6688,"has_fulltext":true,"cited_by_count":8,"citation_normalized_percentile":{"value":0.66691125,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":97},"biblio":{"volume":"36","issue":"10","first_page":"3207","last_page":"3214"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9944000244140625,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7860437631607056},{"id":"https://openalex.org/keywords/inference","display_name":"Inference","score":0.6899816393852234},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.6210106611251831},{"id":"https://openalex.org/keywords/term","display_name":"Term (time)","score":0.5467991232872009},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.48950207233428955},{"id":"https://openalex.org/keywords/intersection","display_name":"Intersection (aeronautics)","score":0.47983166575431824},{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.4420904815196991},{"id":"https://openalex.org/keywords/quality","display_name":"Quality (philosophy)","score":0.4249940514564514},{"id":"https://openalex.org/keywords/vocabulary","display_name":"Vocabulary","score":0.41812461614608765},{"id":"https://openalex.org/keywords/domain","display_name":"Domain (mathematical analysis)","score":0.4111436605453491},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.37123143672943115},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3672849237918854},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.30709558725357056}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7860437631607056},{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.6899816393852234},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.6210106611251831},{"id":"https://openalex.org/C61797465","wikidata":"https://www.wikidata.org/wiki/Q1188986","display_name":"Term (time)","level":2,"score":0.5467991232872009},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.48950207233428955},{"id":"https://openalex.org/C64543145","wikidata":"https://www.wikidata.org/wiki/Q162942","display_name":"Intersection (aeronautics)","level":2,"score":0.47983166575431824},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.4420904815196991},{"id":"https://openalex.org/C2779530757","wikidata":"https://www.wikidata.org/wiki/Q1207505","display_name":"Quality (philosophy)","level":2,"score":0.4249940514564514},{"id":"https://openalex.org/C2777601683","wikidata":"https://www.wikidata.org/wiki/Q6499736","display_name":"Vocabulary","level":2,"score":0.41812461614608765},{"id":"https://openalex.org/C36503486","wikidata":"https://www.wikidata.org/wiki/Q11235244","display_name":"Domain (mathematical analysis)","level":2,"score":0.4111436605453491},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.37123143672943115},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3672849237918854},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.30709558725357056},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C187736073","wikidata":"https://www.wikidata.org/wiki/Q2920921","display_name":"Management","level":1,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C146978453","wikidata":"https://www.wikidata.org/wiki/Q3798668","display_name":"Aerospace engineering","level":1,"score":0.0},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.0},{"id":"https://openalex.org/C94625758","wikidata":"https://www.wikidata.org/wiki/Q7163","display_name":"Politics","level":2,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D063990","descriptor_name":"Gene Ontology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D063990","descriptor_name":"Gene Ontology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D063990","descriptor_name":"Gene Ontology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D063990","descriptor_name":"Gene Ontology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btaa106","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa106","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/10/3207/33204161/btaa106.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:32065617","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/32065617","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:7214018","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7214018","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btaa106","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa106","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/10/3207/33204161/btaa106.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2652762446","display_name":null,"funder_award_id":"UL1TR001998","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G3497591915","display_name":null,"funder_award_id":"(NIH)","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G3608896873","display_name":null,"funder_award_id":"TR001998","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G4747148265","display_name":null,"funder_award_id":"UL1TR001998-01","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G6400215437","display_name":null,"funder_award_id":"1931134","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G6680138726","display_name":null,"funder_award_id":"1419282","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G7457546411","display_name":null,"funder_award_id":"1657306","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G790741312","display_name":null,"funder_award_id":"R21CA231904","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3008215845.pdf","grobid_xml":"https://content.openalex.org/works/W3008215845.grobid-xml"},"referenced_works_count":25,"referenced_works":["https://openalex.org/W55962619","https://openalex.org/W2041428546","https://openalex.org/W2047391928","https://openalex.org/W2078161054","https://openalex.org/W2100017293","https://openalex.org/W2103017472","https://openalex.org/W2119780191","https://openalex.org/W2124954099","https://openalex.org/W2141545183","https://openalex.org/W2143962926","https://openalex.org/W2150392051","https://openalex.org/W2171030481","https://openalex.org/W2194675750","https://openalex.org/W2260376738","https://openalex.org/W2402498766","https://openalex.org/W2531566782","https://openalex.org/W2546848075","https://openalex.org/W2591123247","https://openalex.org/W2609436323","https://openalex.org/W2778655071","https://openalex.org/W2785571806","https://openalex.org/W2950595506","https://openalex.org/W6660511571","https://openalex.org/W6682436242","https://openalex.org/W6713112013"],"related_works":["https://openalex.org/W2348909947","https://openalex.org/W4292672442","https://openalex.org/W2362101859","https://openalex.org/W2003333417","https://openalex.org/W2791431590","https://openalex.org/W2941610985","https://openalex.org/W4235810826","https://openalex.org/W2350688482","https://openalex.org/W2122135111","https://openalex.org/W2053575972"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":4},{"year":2020,"cited_by_count":2}],"updated_date":"2026-04-21T08:09:41.155169","created_date":"2025-10-10T00:00:00"}
