{"id":"https://openalex.org/W3117392845","doi":"https://doi.org/10.1093/bioinformatics/btaa1056","title":"PStrain: an iterative microbial strains profiling algorithm for shotgun metagenomic sequencing data","display_name":"PStrain: an iterative microbial strains profiling algorithm for shotgun metagenomic sequencing data","publication_year":2020,"publication_date":"2020-12-01","ids":{"openalex":"https://openalex.org/W3117392845","doi":"https://doi.org/10.1093/bioinformatics/btaa1056","mag":"3117392845","pmid":"https://pubmed.ncbi.nlm.nih.gov/33346799"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btaa1056","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa1056","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/22-23/5499/36855972/btaa1056.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/36/22-23/5499/36855972/btaa1056.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100328276","display_name":"Shuai Wang","orcid":"https://orcid.org/0000-0002-1922-4878"},"institutions":[{"id":"https://openalex.org/I168719708","display_name":"City University of Hong Kong","ror":"https://ror.org/03q8dnn23","country_code":"HK","type":"education","lineage":["https://openalex.org/I168719708"]}],"countries":["HK"],"is_corresponding":false,"raw_author_name":"Shuai Wang","raw_affiliation_strings":["Department of Computer Science, City University of Hong Kong , Kowloon Tong, Hong Kong"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, City University of Hong Kong , Kowloon Tong, Hong Kong","institution_ids":["https://openalex.org/I168719708"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046942454","display_name":"Yiqi Jiang","orcid":"https://orcid.org/0000-0003-4950-937X"},"institutions":[{"id":"https://openalex.org/I168719708","display_name":"City University of Hong Kong","ror":"https://ror.org/03q8dnn23","country_code":"HK","type":"education","lineage":["https://openalex.org/I168719708"]}],"countries":["HK"],"is_corresponding":false,"raw_author_name":"Yiqi Jiang","raw_affiliation_strings":["Department of Computer Science, City University of Hong Kong , Kowloon Tong, Hong Kong"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, City University of Hong Kong , Kowloon Tong, Hong Kong","institution_ids":["https://openalex.org/I168719708"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5083428910","display_name":"Shuai Cheng Li","orcid":"https://orcid.org/0000-0001-6246-6349"},"institutions":[{"id":"https://openalex.org/I168719708","display_name":"City University of Hong Kong","ror":"https://ror.org/03q8dnn23","country_code":"HK","type":"education","lineage":["https://openalex.org/I168719708"]}],"countries":["HK"],"is_corresponding":true,"raw_author_name":"Shuaicheng Li","raw_affiliation_strings":["Department of Computer Science, City University of Hong Kong , Kowloon Tong, Hong Kong"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, City University of Hong Kong , Kowloon Tong, Hong Kong","institution_ids":["https://openalex.org/I168719708"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5083428910"],"corresponding_institution_ids":["https://openalex.org/I168719708"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":1.0771,"has_fulltext":true,"cited_by_count":18,"citation_normalized_percentile":{"value":0.76809466,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":95,"max":99},"biblio":{"volume":"36","issue":"22-23","first_page":"5499","last_page":"5506"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10066","display_name":"Gut microbiota and health","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10066","display_name":"Gut microbiota and health","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10141","display_name":"Probiotics and Fermented Foods","score":0.9901000261306763,"subfield":{"id":"https://openalex.org/subfields/1106","display_name":"Food Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/metagenomics","display_name":"Metagenomics","score":0.8266334533691406},{"id":"https://openalex.org/keywords/shotgun-sequencing","display_name":"Shotgun sequencing","score":0.7787579298019409},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.7267971038818359},{"id":"https://openalex.org/keywords/genotype","display_name":"Genotype","score":0.6256588101387024},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5899701714515686},{"id":"https://openalex.org/keywords/locus","display_name":"Locus (genetics)","score":0.5812942385673523},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.5269913077354431},{"id":"https://openalex.org/keywords/shotgun","display_name":"Shotgun","score":0.5053644776344299},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.46264755725860596},{"id":"https://openalex.org/keywords/dna-sequencing","display_name":"DNA sequencing","score":0.4386936128139496},{"id":"https://openalex.org/keywords/strain","display_name":"Strain (injury)","score":0.41012558341026306},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.3936629295349121}],"concepts":[{"id":"https://openalex.org/C15151743","wikidata":"https://www.wikidata.org/wiki/Q903778","display_name":"Metagenomics","level":3,"score":0.8266334533691406},{"id":"https://openalex.org/C101985253","wikidata":"https://www.wikidata.org/wiki/Q1073526","display_name":"Shotgun sequencing","level":4,"score":0.7787579298019409},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.7267971038818359},{"id":"https://openalex.org/C135763542","wikidata":"https://www.wikidata.org/wiki/Q106016","display_name":"Genotype","level":3,"score":0.6256588101387024},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5899701714515686},{"id":"https://openalex.org/C84597430","wikidata":"https://www.wikidata.org/wiki/Q106227","display_name":"Locus (genetics)","level":3,"score":0.5812942385673523},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.5269913077354431},{"id":"https://openalex.org/C2781434637","wikidata":"https://www.wikidata.org/wiki/Q486396","display_name":"Shotgun","level":3,"score":0.5053644776344299},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.46264755725860596},{"id":"https://openalex.org/C51679486","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"DNA sequencing","level":3,"score":0.4386936128139496},{"id":"https://openalex.org/C2778022156","wikidata":"https://www.wikidata.org/wiki/Q576145","display_name":"Strain (injury)","level":2,"score":0.41012558341026306},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.3936629295349121},{"id":"https://openalex.org/C105702510","wikidata":"https://www.wikidata.org/wiki/Q514","display_name":"Anatomy","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btaa1056","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa1056","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/22-23/5499/36855972/btaa1056.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:33346799","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/33346799","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btaa1056","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaa1056","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/36/22-23/5499/36855972/btaa1056.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G7256901109","display_name":null,"funder_award_id":"7005215","funder_id":"https://openalex.org/F4320309893","funder_display_name":"City University of Hong Kong"}],"funders":[{"id":"https://openalex.org/F4320309893","display_name":"City University of Hong Kong","ror":"https://ror.org/03q8dnn23"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3117392845.pdf","grobid_xml":"https://content.openalex.org/works/W3117392845.grobid-xml"},"referenced_works_count":44,"referenced_works":["https://openalex.org/W1433995531","https://openalex.org/W1703384511","https://openalex.org/W1736545692","https://openalex.org/W1919257374","https://openalex.org/W1972924519","https://openalex.org/W1992050568","https://openalex.org/W2001561488","https://openalex.org/W2023566940","https://openalex.org/W2031611770","https://openalex.org/W2037279825","https://openalex.org/W2059410416","https://openalex.org/W2078770291","https://openalex.org/W2093062709","https://openalex.org/W2107414352","https://openalex.org/W2108234281","https://openalex.org/W2113287691","https://openalex.org/W2126948011","https://openalex.org/W2130725058","https://openalex.org/W2131026689","https://openalex.org/W2137270994","https://openalex.org/W2143280034","https://openalex.org/W2147581876","https://openalex.org/W2149481560","https://openalex.org/W2150131459","https://openalex.org/W2151372451","https://openalex.org/W2157539385","https://openalex.org/W2167062509","https://openalex.org/W2170551349","https://openalex.org/W2178425989","https://openalex.org/W2212407137","https://openalex.org/W2307206101","https://openalex.org/W2533132894","https://openalex.org/W2583923782","https://openalex.org/W2586360538","https://openalex.org/W2777544090","https://openalex.org/W2785719692","https://openalex.org/W2792841057","https://openalex.org/W2887136521","https://openalex.org/W2895335732","https://openalex.org/W2908747555","https://openalex.org/W2922904366","https://openalex.org/W2927961455","https://openalex.org/W2952247682","https://openalex.org/W6732599157"],"related_works":["https://openalex.org/W4210312276","https://openalex.org/W2417514914","https://openalex.org/W4389452281","https://openalex.org/W3043668926","https://openalex.org/W3036436206","https://openalex.org/W3194449900","https://openalex.org/W3111832393","https://openalex.org/W4321764688","https://openalex.org/W4226340145","https://openalex.org/W1989359751"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":4},{"year":2022,"cited_by_count":9}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
