{"id":"https://openalex.org/W2107243418","doi":"https://doi.org/10.1093/bib/bbs070","title":"Bioinformatic approaches for functional annotation and pathway inference in metagenomics data","display_name":"Bioinformatic approaches for functional annotation and pathway inference in metagenomics data","publication_year":2012,"publication_date":"2012-11-01","ids":{"openalex":"https://openalex.org/W2107243418","doi":"https://doi.org/10.1093/bib/bbs070","mag":"2107243418","pmid":"https://pubmed.ncbi.nlm.nih.gov/23175748"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbs070","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbs070","pdf_url":"https://academic.oup.com/bib/article-pdf/13/6/696/484071/bbs070.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"review","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bib/article-pdf/13/6/696/484071/bbs070.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5006094365","display_name":"Carlotta De Filippo","orcid":"https://orcid.org/0000-0002-2222-6524"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"C. De Filippo","raw_affiliation_strings":["CRI-FEM, Trento, Italy"],"affiliations":[{"raw_affiliation_string":"CRI-FEM, Trento, Italy","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074531336","display_name":"Matteo Ramazzotti","orcid":"https://orcid.org/0000-0002-6862-9409"},"institutions":[{"id":"https://openalex.org/I103225651","display_name":"Fondazione Edmund Mach","ror":"https://ror.org/0381bab64","country_code":"IT","type":"other","lineage":["https://openalex.org/I103225651"]},{"id":"https://openalex.org/I2802934434","display_name":"The Microsoft Research - University of Trento Centre for Computational and Systems Biology","ror":"https://ror.org/04kcgyj43","country_code":"IT","type":"nonprofit","lineage":["https://openalex.org/I1290206253","https://openalex.org/I193223587","https://openalex.org/I2802934434","https://openalex.org/I4210164937"]},{"id":"https://openalex.org/I45084792","display_name":"University of Florence","ror":"https://ror.org/04jr1s763","country_code":"IT","type":"education","lineage":["https://openalex.org/I45084792"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"M. Ramazzotti","raw_affiliation_strings":["University of Florence, Italy","Fondazione Edmund Mach, Research and Innovation Centre, Via E. Mach, 1, 38010 San Michele all'Adige, Trento, Italy","University of Florence, Italy, and coordinator of the Centre for Computational Biology at CRI-FEM (Trento, Italy"],"affiliations":[{"raw_affiliation_string":"University of Florence, Italy","institution_ids":["https://openalex.org/I45084792"]},{"raw_affiliation_string":"Fondazione Edmund Mach, Research and Innovation Centre, Via E. Mach, 1, 38010 San Michele all'Adige, Trento, Italy","institution_ids":["https://openalex.org/I103225651"]},{"raw_affiliation_string":"University of Florence, Italy, and coordinator of the Centre for Computational Biology at CRI-FEM (Trento, Italy","institution_ids":["https://openalex.org/I2802934434","https://openalex.org/I45084792"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5042600667","display_name":"Paolo Fontana","orcid":"https://orcid.org/0000-0002-4523-4818"},"institutions":[{"id":"https://openalex.org/I2802934434","display_name":"The Microsoft Research - University of Trento Centre for Computational and Systems Biology","ror":"https://ror.org/04kcgyj43","country_code":"IT","type":"nonprofit","lineage":["https://openalex.org/I1290206253","https://openalex.org/I193223587","https://openalex.org/I2802934434","https://openalex.org/I4210164937"]},{"id":"https://openalex.org/I45084792","display_name":"University of Florence","ror":"https://ror.org/04jr1s763","country_code":"IT","type":"education","lineage":["https://openalex.org/I45084792"]},{"id":"https://openalex.org/I103225651","display_name":"Fondazione Edmund Mach","ror":"https://ror.org/0381bab64","country_code":"IT","type":"other","lineage":["https://openalex.org/I103225651"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"P. Fontana","raw_affiliation_strings":["University of Florence, Italy","Fondazione Edmund Mach, Research and Innovation Centre, Via E. Mach, 1, 38010 San Michele all'Adige, Trento, Italy","University of Florence, Italy, and coordinator of the Centre for Computational Biology at CRI-FEM (Trento, Italy"],"affiliations":[{"raw_affiliation_string":"University of Florence, Italy","institution_ids":["https://openalex.org/I45084792"]},{"raw_affiliation_string":"Fondazione Edmund Mach, Research and Innovation Centre, Via E. Mach, 1, 38010 San Michele all'Adige, Trento, Italy","institution_ids":["https://openalex.org/I103225651"]},{"raw_affiliation_string":"University of Florence, Italy, and coordinator of the Centre for Computational Biology at CRI-FEM (Trento, Italy","institution_ids":["https://openalex.org/I2802934434","https://openalex.org/I45084792"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5056119983","display_name":"Duccio Cavalieri","orcid":"https://orcid.org/0000-0001-6426-5719"},"institutions":[{"id":"https://openalex.org/I2802934434","display_name":"The Microsoft Research - University of Trento Centre for Computational and Systems Biology","ror":"https://ror.org/04kcgyj43","country_code":"IT","type":"nonprofit","lineage":["https://openalex.org/I1290206253","https://openalex.org/I193223587","https://openalex.org/I2802934434","https://openalex.org/I4210164937"]},{"id":"https://openalex.org/I103225651","display_name":"Fondazione Edmund Mach","ror":"https://ror.org/0381bab64","country_code":"IT","type":"other","lineage":["https://openalex.org/I103225651"]},{"id":"https://openalex.org/I45084792","display_name":"University of Florence","ror":"https://ror.org/04jr1s763","country_code":"IT","type":"education","lineage":["https://openalex.org/I45084792"]}],"countries":["IT"],"is_corresponding":true,"raw_author_name":"D. Cavalieri","raw_affiliation_strings":["University of Florence, Italy","University of Florence, Italy, and coordinator of the Centre for Computational Biology at CRI-FEM (Trento, Italy","Fondazione Edmund Mach, Research and Innovation Centre, Via E. Mach, 1, 38010 San Michele all'Adige, Trento, Italy"],"affiliations":[{"raw_affiliation_string":"University of Florence, Italy","institution_ids":["https://openalex.org/I45084792"]},{"raw_affiliation_string":"University of Florence, Italy, and coordinator of the Centre for Computational Biology at CRI-FEM (Trento, Italy","institution_ids":["https://openalex.org/I2802934434","https://openalex.org/I45084792"]},{"raw_affiliation_string":"Fondazione Edmund Mach, Research and Innovation Centre, Via E. Mach, 1, 38010 San Michele all'Adige, Trento, Italy","institution_ids":["https://openalex.org/I103225651"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5056119983"],"corresponding_institution_ids":["https://openalex.org/I103225651","https://openalex.org/I2802934434","https://openalex.org/I45084792"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":3.7535,"has_fulltext":true,"cited_by_count":86,"citation_normalized_percentile":{"value":0.9414695,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":91,"max":100},"biblio":{"volume":"13","issue":"6","first_page":"696","last_page":"710"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11791","display_name":"Microbial Community Ecology and Physiology","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/metagenomics","display_name":"Metagenomics","score":0.8127011656761169},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.6183040738105774},{"id":"https://openalex.org/keywords/inference","display_name":"Inference","score":0.5929129123687744},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5830501317977905},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.5343037843704224},{"id":"https://openalex.org/keywords/function","display_name":"Function (biology)","score":0.5259880423545837},{"id":"https://openalex.org/keywords/microbiome","display_name":"Microbiome","score":0.517665445804596},{"id":"https://openalex.org/keywords/organism","display_name":"Organism","score":0.47925758361816406},{"id":"https://openalex.org/keywords/evolutionary-biology","display_name":"Evolutionary biology","score":0.34479111433029175},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.34251612424850464},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.26290637254714966},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.24817565083503723},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.2011793851852417},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.1447366178035736}],"concepts":[{"id":"https://openalex.org/C15151743","wikidata":"https://www.wikidata.org/wiki/Q903778","display_name":"Metagenomics","level":3,"score":0.8127011656761169},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6183040738105774},{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.5929129123687744},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5830501317977905},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.5343037843704224},{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.5259880423545837},{"id":"https://openalex.org/C143121216","wikidata":"https://www.wikidata.org/wiki/Q1330402","display_name":"Microbiome","level":2,"score":0.517665445804596},{"id":"https://openalex.org/C137858568","wikidata":"https://www.wikidata.org/wiki/Q7239","display_name":"Organism","level":2,"score":0.47925758361816406},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.34479111433029175},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.34251612424850464},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.26290637254714966},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.24817565083503723},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.2011793851852417},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.1447366178035736}],"mesh":[{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D054892","descriptor_name":"Metagenome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D054892","descriptor_name":"Metagenome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D054892","descriptor_name":"Metagenome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":5,"locations":[{"id":"doi:10.1093/bib/bbs070","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbs070","pdf_url":"https://academic.oup.com/bib/article-pdf/13/6/696/484071/bbs070.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:23175748","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/23175748","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:openpub.fmach.it:10449/21562","is_oa":true,"landing_page_url":"http://hdl.handle.net/10449/21562","pdf_url":"http://hdl.handle.net/10449/21562","source":{"id":"https://openalex.org/S4377196413","display_name":"CINECA IRIS Institutional Research Information System (Fondazione Edmund Mach)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I103225651","host_organization_name":"Fondazione Edmund Mach","host_organization_lineage":["https://openalex.org/I103225651"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:europepmc.org:2501851","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3505041","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:flore.unifi.it:2158/778246","is_oa":true,"landing_page_url":"http://bib.oxfordjournals.org/content/13/6/696.abstract","pdf_url":null,"source":{"id":"https://openalex.org/S4306402033","display_name":"Florence Research (University of Florence)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I45084792","host_organization_name":"University of Florence","host_organization_lineage":["https://openalex.org/I45084792"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1093/bib/bbs070","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbs070","pdf_url":"https://academic.oup.com/bib/article-pdf/13/6/696/484071/bbs070.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.7400000095367432,"display_name":"Life in Land","id":"https://metadata.un.org/sdg/15"}],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2107243418.pdf","grobid_xml":"https://content.openalex.org/works/W2107243418.grobid-xml"},"referenced_works_count":105,"referenced_works":["https://openalex.org/W203623169","https://openalex.org/W1562379206","https://openalex.org/W1587277135","https://openalex.org/W1598134722","https://openalex.org/W1968644052","https://openalex.org/W1969709265","https://openalex.org/W1970556744","https://openalex.org/W1971061059","https://openalex.org/W1972924519","https://openalex.org/W1982013068","https://openalex.org/W1983169073","https://openalex.org/W1984602113","https://openalex.org/W1988925586","https://openalex.org/W1992738052","https://openalex.org/W1994456450","https://openalex.org/W1995393174","https://openalex.org/W1998077837","https://openalex.org/W1998125620","https://openalex.org/W1998767819","https://openalex.org/W2000589358","https://openalex.org/W2018686814","https://openalex.org/W2022616740","https://openalex.org/W2023046869","https://openalex.org/W2031893281","https://openalex.org/W2032230795","https://openalex.org/W2037993016","https://openalex.org/W2046506207","https://openalex.org/W2047927409","https://openalex.org/W2048673910","https://openalex.org/W2048818637","https://openalex.org/W2051915802","https://openalex.org/W2055503200","https://openalex.org/W2058501095","https://openalex.org/W2059497349","https://openalex.org/W2067164255","https://openalex.org/W2069157810","https://openalex.org/W2069689025","https://openalex.org/W2073141486","https://openalex.org/W2077631777","https://openalex.org/W2079048673","https://openalex.org/W2082382448","https://openalex.org/W2087292184","https://openalex.org/W2091922579","https://openalex.org/W2095200684","https://openalex.org/W2097606916","https://openalex.org/W2098824895","https://openalex.org/W2100084634","https://openalex.org/W2102118387","https://openalex.org/W2103441770","https://openalex.org/W2107854630","https://openalex.org/W2108718991","https://openalex.org/W2109848222","https://openalex.org/W2111381495","https://openalex.org/W2113601822","https://openalex.org/W2113915152","https://openalex.org/W2114956488","https://openalex.org/W2116398954","https://openalex.org/W2118277309","https://openalex.org/W2118526609","https://openalex.org/W2120365168","https://openalex.org/W2122210493","https://openalex.org/W2122302420","https://openalex.org/W2123837003","https://openalex.org/W2124985265","https://openalex.org/W2125826054","https://openalex.org/W2127844534","https://openalex.org/W2128124531","https://openalex.org/W2128601422","https://openalex.org/W2129014750","https://openalex.org/W2130410032","https://openalex.org/W2130956021","https://openalex.org/W2133253129","https://openalex.org/W2133423359","https://openalex.org/W2133856765","https://openalex.org/W2135621733","https://openalex.org/W2136168229","https://openalex.org/W2136720095","https://openalex.org/W2140638310","https://openalex.org/W2141920662","https://openalex.org/W2143842034","https://openalex.org/W2145336165","https://openalex.org/W2149021569","https://openalex.org/W2149202898","https://openalex.org/W2150337627","https://openalex.org/W2150840247","https://openalex.org/W2150908245","https://openalex.org/W2152885278","https://openalex.org/W2154431984","https://openalex.org/W2154972152","https://openalex.org/W2155066423","https://openalex.org/W2155985338","https://openalex.org/W2156296225","https://openalex.org/W2158714788","https://openalex.org/W2160945762","https://openalex.org/W2162088497","https://openalex.org/W2162704968","https://openalex.org/W2164560148","https://openalex.org/W2167639526","https://openalex.org/W2168465568","https://openalex.org/W2168782082","https://openalex.org/W2170196186","https://openalex.org/W2320659568","https://openalex.org/W2914081640","https://openalex.org/W4233060585","https://openalex.org/W4233334497"],"related_works":["https://openalex.org/W638577851","https://openalex.org/W2968354375","https://openalex.org/W2359440920","https://openalex.org/W4242417330","https://openalex.org/W2889550857","https://openalex.org/W3013372948","https://openalex.org/W24843447","https://openalex.org/W3135997498","https://openalex.org/W3139084279","https://openalex.org/W4368360101"],"abstract_inverted_index":{"Metagenomic":[0],"approaches":[1],"are":[2],"increasingly":[3],"recognized":[4],"as":[5,124],"a":[6,33,36,42,101],"baseline":[7],"for":[8,21],"understanding":[9],"the":[10,77,85,105,125],"ecology":[11],"and":[12,52,60,110,118,121,137],"evolution":[13],"of":[14,19,28,38,44,47,79,87,104,107,112,127,129,135],"microbial":[15,89],"ecosystems.":[16],"The":[17,95],"development":[18,111],"methods":[20],"pathway":[22],"inference":[23],"from":[24,41],"metagenomics":[25],"data":[26],"is":[27,72],"paramount":[29],"importance":[30],"to":[31,35,115],"link":[32],"phenotype":[34],"cascade":[37],"events":[39],"stemming":[40],"series":[43],"connected":[45],"sets":[46],"genes":[48],"or":[49],"proteins.":[50],"Biochemical":[51],"regulatory":[53,122],"pathways":[54,123],"have":[55],"until":[56],"recently":[57],"been":[58],"thought":[59],"modelled":[61],"within":[62],"one":[63,66,68],"cell":[64,140],"type,":[65],"organism,":[67],"species.":[69],"This":[70],"vision":[71],"being":[73],"dramatically":[74],"changed":[75],"by":[76],"advent":[78],"whole":[80],"microbiome":[81],"sequencing":[82],"studies,":[83],"revealing":[84],"role":[86],"symbiotic":[88,133],"populations":[90],"in":[91,131],"fundamental":[92],"biochemical":[93,120],"functions.":[94],"new":[96,113],"landscape":[97],"we":[98],"face":[99],"requires":[100],"clear":[102],"picture":[103],"potentialities":[106],"existing":[108],"tools":[109,114],"characterize,":[116],"reconstruct":[117],"model":[119],"result":[126],"integration":[128],"function":[130],"complex":[132],"interactions":[134],"ontologically":[136],"evolutionary":[138],"distinct":[139],"types.":[141]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":3},{"year":2022,"cited_by_count":6},{"year":2021,"cited_by_count":9},{"year":2020,"cited_by_count":5},{"year":2019,"cited_by_count":8},{"year":2018,"cited_by_count":10},{"year":2017,"cited_by_count":6},{"year":2016,"cited_by_count":9},{"year":2015,"cited_by_count":11},{"year":2014,"cited_by_count":13},{"year":2013,"cited_by_count":4}],"updated_date":"2026-03-10T16:38:18.471706","created_date":"2025-10-10T00:00:00"}
