{"id":"https://openalex.org/W4206007286","doi":"https://doi.org/10.1093/bib/bbab555","title":"Predicting protein stability changes upon single-point mutation: a thorough comparison of the available tools on a new dataset","display_name":"Predicting protein stability changes upon single-point mutation: a thorough comparison of the available tools on a new dataset","publication_year":2021,"publication_date":"2021-12-06","ids":{"openalex":"https://openalex.org/W4206007286","doi":"https://doi.org/10.1093/bib/bbab555","pmid":"https://pubmed.ncbi.nlm.nih.gov/35021190"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbab555","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbab555","pdf_url":"https://academic.oup.com/bib/article-pdf/23/2/bbab555/42805194/bbab555.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bib/article-pdf/23/2/bbab555/42805194/bbab555.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5021498894","display_name":"Corrado Pancotti","orcid":"https://orcid.org/0000-0003-2327-1148"},"institutions":[{"id":"https://openalex.org/I55143463","display_name":"University of Turin","ror":"https://ror.org/048tbm396","country_code":"IT","type":"education","lineage":["https://openalex.org/I55143463"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Corrado Pancotti","raw_affiliation_strings":["Department of Medical Sciences, University of Torino, Via Santena 19, 10126 Torino, Italy"],"affiliations":[{"raw_affiliation_string":"Department of Medical Sciences, University of Torino, Via Santena 19, 10126 Torino, Italy","institution_ids":["https://openalex.org/I55143463"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5048522388","display_name":"Silvia Benevenuta","orcid":"https://orcid.org/0000-0002-4733-8338"},"institutions":[{"id":"https://openalex.org/I55143463","display_name":"University of Turin","ror":"https://ror.org/048tbm396","country_code":"IT","type":"education","lineage":["https://openalex.org/I55143463"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Silvia Benevenuta","raw_affiliation_strings":["Department of Medical Sciences, University of Torino, Via Santena 19, 10126 Torino, Italy"],"affiliations":[{"raw_affiliation_string":"Department of Medical Sciences, University of Torino, Via Santena 19, 10126 Torino, Italy","institution_ids":["https://openalex.org/I55143463"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090617021","display_name":"Giovanni Birolo","orcid":"https://orcid.org/0000-0003-0160-9312"},"institutions":[{"id":"https://openalex.org/I55143463","display_name":"University of Turin","ror":"https://ror.org/048tbm396","country_code":"IT","type":"education","lineage":["https://openalex.org/I55143463"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Giovanni Birolo","raw_affiliation_strings":["Department of Medical Sciences, University of Torino, Via Santena 19, 10126 Torino, Italy"],"affiliations":[{"raw_affiliation_string":"Department of Medical Sciences, University of Torino, Via Santena 19, 10126 Torino, Italy","institution_ids":["https://openalex.org/I55143463"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062662954","display_name":"Virginia Alberini","orcid":"https://orcid.org/0009-0004-6107-369X"},"institutions":[{"id":"https://openalex.org/I55143463","display_name":"University of Turin","ror":"https://ror.org/048tbm396","country_code":"IT","type":"education","lineage":["https://openalex.org/I55143463"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Virginia Alberini","raw_affiliation_strings":["Department of Medical Sciences, University of Torino, Via Santena 19, 10126 Torino, Italy"],"affiliations":[{"raw_affiliation_string":"Department of Medical Sciences, University of Torino, Via Santena 19, 10126 Torino, Italy","institution_ids":["https://openalex.org/I55143463"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044698263","display_name":"Valeria Repetto","orcid":"https://orcid.org/0000-0001-8678-3189"},"institutions":[{"id":"https://openalex.org/I55143463","display_name":"University of Turin","ror":"https://ror.org/048tbm396","country_code":"IT","type":"education","lineage":["https://openalex.org/I55143463"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Valeria Repetto","raw_affiliation_strings":["Department of Medical Sciences, University of Torino, Via Santena 19, 10126 Torino, Italy"],"affiliations":[{"raw_affiliation_string":"Department of Medical Sciences, University of Torino, Via Santena 19, 10126 Torino, Italy","institution_ids":["https://openalex.org/I55143463"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008327028","display_name":"Tiziana Sanavia","orcid":"https://orcid.org/0000-0003-3288-0631"},"institutions":[{"id":"https://openalex.org/I55143463","display_name":"University of Turin","ror":"https://ror.org/048tbm396","country_code":"IT","type":"education","lineage":["https://openalex.org/I55143463"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Tiziana Sanavia","raw_affiliation_strings":["Department of Medical Sciences, University of Torino, Via Santena 19, 10126 Torino, Italy"],"affiliations":[{"raw_affiliation_string":"Department of Medical Sciences, University of Torino, Via Santena 19, 10126 Torino, Italy","institution_ids":["https://openalex.org/I55143463"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5029911656","display_name":"Emidio Capriotti","orcid":"https://orcid.org/0000-0002-2323-0963"},"institutions":[{"id":"https://openalex.org/I9360294","display_name":"University of Bologna","ror":"https://ror.org/01111rn36","country_code":"IT","type":"education","lineage":["https://openalex.org/I9360294"]}],"countries":["IT"],"is_corresponding":true,"raw_author_name":"Emidio Capriotti","raw_affiliation_strings":["Department of Pharmacy and Biotechnology (FaBiT), University of Bologna, Bologna, Italy"],"affiliations":[{"raw_affiliation_string":"Department of Pharmacy and Biotechnology (FaBiT), University of Bologna, Bologna, Italy","institution_ids":["https://openalex.org/I9360294"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5060232841","display_name":"Piero Fariselli","orcid":"https://orcid.org/0000-0003-1811-4762"},"institutions":[{"id":"https://openalex.org/I55143463","display_name":"University of Turin","ror":"https://ror.org/048tbm396","country_code":"IT","type":"education","lineage":["https://openalex.org/I55143463"]}],"countries":["IT"],"is_corresponding":true,"raw_author_name":"Piero Fariselli","raw_affiliation_strings":["Department of Medical Sciences, University of Torino, Via Santena 19, 10126 Torino, Italy"],"affiliations":[{"raw_affiliation_string":"Department of Medical Sciences, University of Torino, Via Santena 19, 10126 Torino, Italy","institution_ids":["https://openalex.org/I55143463"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5029911656","https://openalex.org/A5060232841"],"corresponding_institution_ids":["https://openalex.org/I55143463","https://openalex.org/I9360294"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":{"value":4011,"currency":"USD","value_usd":4011},"fwci":8.0505,"has_fulltext":true,"cited_by_count":139,"citation_normalized_percentile":{"value":0.98552688,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"23","issue":"2","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9966999888420105,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9965999722480774,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/stability","display_name":"Stability (learning theory)","score":0.7048282027244568},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6391619443893433},{"id":"https://openalex.org/keywords/antisymmetry","display_name":"Antisymmetry","score":0.6170570850372314},{"id":"https://openalex.org/keywords/pearson-product-moment-correlation-coefficient","display_name":"Pearson product-moment correlation coefficient","score":0.6037285327911377},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.5162848830223083},{"id":"https://openalex.org/keywords/protein-stability","display_name":"Protein stability","score":0.48636820912361145},{"id":"https://openalex.org/keywords/property","display_name":"Property (philosophy)","score":0.47256770730018616},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.45777627825737},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4457729160785675},{"id":"https://openalex.org/keywords/correlation","display_name":"Correlation","score":0.4430602788925171},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.39996546506881714},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.31390246748924255},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.2546885311603546},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.25426584482192993},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.13743895292282104}],"concepts":[{"id":"https://openalex.org/C112972136","wikidata":"https://www.wikidata.org/wiki/Q7595718","display_name":"Stability (learning theory)","level":2,"score":0.7048282027244568},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6391619443893433},{"id":"https://openalex.org/C114825156","wikidata":"https://www.wikidata.org/wiki/Q4775328","display_name":"Antisymmetry","level":2,"score":0.6170570850372314},{"id":"https://openalex.org/C55078378","wikidata":"https://www.wikidata.org/wiki/Q1136628","display_name":"Pearson product-moment correlation coefficient","level":2,"score":0.6037285327911377},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.5162848830223083},{"id":"https://openalex.org/C2988375501","wikidata":"https://www.wikidata.org/wiki/Q847556","display_name":"Protein stability","level":2,"score":0.48636820912361145},{"id":"https://openalex.org/C189950617","wikidata":"https://www.wikidata.org/wiki/Q937228","display_name":"Property (philosophy)","level":2,"score":0.47256770730018616},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.45777627825737},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4457729160785675},{"id":"https://openalex.org/C117220453","wikidata":"https://www.wikidata.org/wiki/Q5172842","display_name":"Correlation","level":2,"score":0.4430602788925171},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.39996546506881714},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.31390246748924255},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.2546885311603546},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.25426584482192993},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.13743895292282104},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C95444343","wikidata":"https://www.wikidata.org/wiki/Q7141","display_name":"Cell biology","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.0},{"id":"https://openalex.org/C187736073","wikidata":"https://www.wikidata.org/wiki/Q2920921","display_name":"Management","level":1,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D013816","descriptor_name":"Thermodynamics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013816","descriptor_name":"Thermodynamics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013816","descriptor_name":"Thermodynamics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017354","descriptor_name":"Point Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017354","descriptor_name":"Point Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017354","descriptor_name":"Point Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D055550","descriptor_name":"Protein Stability","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055550","descriptor_name":"Protein Stability","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055550","descriptor_name":"Protein Stability","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1093/bib/bbab555","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbab555","pdf_url":"https://academic.oup.com/bib/article-pdf/23/2/bbab555/42805194/bbab555.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:35021190","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/35021190","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:8921618","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8921618","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Brief Bioinform","raw_type":"Text"},{"id":"pmh:oai:iris.unito.it:2318/1832154","is_oa":true,"landing_page_url":"http://hdl.handle.net/2318/1832154","pdf_url":"http://hdl.handle.net/2318/1832154","source":{"id":"https://openalex.org/S4306400637","display_name":"Institutional Research Information System University of Turin (University of Turin)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I55143463","host_organization_name":"University of Turin","host_organization_lineage":["https://openalex.org/I55143463"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:cris.unibo.it:11585/849300","is_oa":true,"landing_page_url":"https://hdl.handle.net/11585/849300","pdf_url":null,"source":{"id":"https://openalex.org/S4306402579","display_name":"Archivio istituzionale della ricerca (Alma Mater Studiorum Universit\u00e0 di Bologna)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210117483","host_organization_name":"Istituto di Ematologia di Bologna","host_organization_lineage":["https://openalex.org/I4210117483"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1093/bib/bbab555","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbab555","pdf_url":"https://academic.oup.com/bib/article-pdf/23/2/bbab555/42805194/bbab555.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G6389209724","display_name":null,"funder_award_id":"D15D18000410001","funder_id":"https://openalex.org/F4320317295","funder_display_name":"Dipartimenti di Eccellenza"}],"funders":[{"id":"https://openalex.org/F4320317295","display_name":"Dipartimenti di Eccellenza","ror":null}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4206007286.pdf","grobid_xml":"https://content.openalex.org/works/W4206007286.grobid-xml"},"referenced_works_count":54,"referenced_works":["https://openalex.org/W1979965027","https://openalex.org/W2023490488","https://openalex.org/W2031553026","https://openalex.org/W2064488723","https://openalex.org/W2083771969","https://openalex.org/W2095036253","https://openalex.org/W2099672241","https://openalex.org/W2103459989","https://openalex.org/W2121519777","https://openalex.org/W2134488721","https://openalex.org/W2136513422","https://openalex.org/W2149580316","https://openalex.org/W2151529283","https://openalex.org/W2153457180","https://openalex.org/W2160529747","https://openalex.org/W2168749685","https://openalex.org/W2324374958","https://openalex.org/W2335773464","https://openalex.org/W2418388116","https://openalex.org/W2469640117","https://openalex.org/W2608970480","https://openalex.org/W2794503008","https://openalex.org/W2799513065","https://openalex.org/W2801491392","https://openalex.org/W2893067056","https://openalex.org/W2902559445","https://openalex.org/W2953906682","https://openalex.org/W2955704392","https://openalex.org/W2969598887","https://openalex.org/W2998716839","https://openalex.org/W3028862763","https://openalex.org/W3029124060","https://openalex.org/W3045100294","https://openalex.org/W3048947632","https://openalex.org/W3083008290","https://openalex.org/W3086313594","https://openalex.org/W3093556707","https://openalex.org/W3105751341","https://openalex.org/W3109312535","https://openalex.org/W3117622225","https://openalex.org/W3119533938","https://openalex.org/W3124262119","https://openalex.org/W3127067218","https://openalex.org/W3128822439","https://openalex.org/W3133259203","https://openalex.org/W3136963718","https://openalex.org/W3157741906","https://openalex.org/W3161468334","https://openalex.org/W3164662464","https://openalex.org/W3171481040","https://openalex.org/W3183009512","https://openalex.org/W6679879843","https://openalex.org/W6720748455","https://openalex.org/W6797360896"],"related_works":["https://openalex.org/W2961085424","https://openalex.org/W4306674287","https://openalex.org/W3013810674","https://openalex.org/W4224009465","https://openalex.org/W4286629047","https://openalex.org/W4306321456","https://openalex.org/W4285260836","https://openalex.org/W2376162334","https://openalex.org/W4206007286","https://openalex.org/W4386319337"],"abstract_inverted_index":{"Predicting":[0],"the":[1,16,41,63,67,77,87,91,111,116,123,137,147,158,165,180,184,187,195,199,215],"difference":[2],"in":[3,76,115,146],"thermodynamic":[4,196],"stability":[5,197],"between":[6],"protein":[7,12],"variants":[8,73,100,134,166,203,228],"is":[9,183,214],"crucial":[10],"for":[11,122],"design":[13],"and":[14,43,59,86,98,120,125,132,172],"understanding":[15],"genotype-phenotype":[17],"relationships.":[18],"So":[19],"far,":[20],"several":[21],"computational":[22],"tools":[23,113],"have":[24,35],"been":[25,36],"created":[26],"to":[27,89,157,206,210],"address":[28],"this":[29],"task.":[30],"Nevertheless,":[31],"most":[32,78,200,216],"of":[33,66,71,110,118,149,186,198,219,227],"them":[34],"trained":[37],"or":[38],"optimized":[39],"on":[40,164],"same":[42],"'all'":[44],"available":[45],"data,":[46],"making":[47],"a":[48,55,143],"fair":[49],"comparison":[50],"unfeasible.":[51],"Here,":[52],"we":[53],"introduce":[54],"novel":[56,225],"dataset,":[57],"collected":[58],"manually":[60],"cleaned":[61],"from":[62],"latest":[64],"version":[65],"ThermoMutDB":[68],"database,":[69],"consisting":[70],"669":[72],"not":[74],"included":[75],"widely":[79],"used":[80],"training":[81],"datasets.":[82],"The":[83,107,151],"prediction":[84,220],"performance":[85],"ability":[88],"satisfy":[90],"antisymmetry":[92],"property":[93],"by":[94],"considering":[95],"both":[96,130],"direct":[97,124,131],"reverse":[99,126,133],"were":[101,114],"evaluated":[102],"across":[103],"21":[104],"different":[105],"tools.":[106],"Pearson":[108,144],"correlations":[109],"tested":[112,152,181,230],"ranges":[117],"0.21-0.5":[119],"0-0.45":[121],"variants,":[127],"respectively.":[128],"When":[129],"are":[135],"considered,":[136],"antisymmetric":[138],"methods":[139,153,182,221],"perform":[140],"better":[141],"achieving":[142],"correlation":[145],"range":[148],"0.51-0.62.":[150],"seem":[154],"relatively":[155],"insensitive":[156],"physiological":[159],"conditions,":[160],"performing":[161],"well":[162],"also":[163],"measured":[167],"with":[168,178],"more":[169,208],"extreme":[170],"pH":[171],"temperature":[173],"values.":[174],"A":[175],"common":[176],"issue":[177],"all":[179],"compression":[185],"$\\Delta":[188],"\\Delta":[189],"G$":[190],"predictions":[191],"toward":[192],"zero.":[193],"Furthermore,":[194],"significantly":[201],"stabilizing":[202],"was":[204],"found":[205],"be":[207],"challenging":[209],"predict.":[211],"This":[212],"study":[213],"extensive":[217],"comparisons":[218],"using":[222],"an":[223],"entirely":[224],"set":[226],"never":[229],"before.":[231]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":38},{"year":2024,"cited_by_count":49},{"year":2023,"cited_by_count":35},{"year":2022,"cited_by_count":13}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
