{"id":"https://openalex.org/W2120604485","doi":"https://doi.org/10.1093/bib/2.3.289","title":"Ontologies of developmental anatomy: Their current and future roles","display_name":"Ontologies of developmental anatomy: Their current and future roles","publication_year":2001,"publication_date":"2001-01-01","ids":{"openalex":"https://openalex.org/W2120604485","doi":"https://doi.org/10.1093/bib/2.3.289","mag":"2120604485","pmid":"https://pubmed.ncbi.nlm.nih.gov/11589589"},"language":"en","primary_location":{"id":"doi:10.1093/bib/2.3.289","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/2.3.289","pdf_url":"https://academic.oup.com/bib/article-pdf/2/3/289/9731773/289.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bib/article-pdf/2/3/289/9731773/289.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5041987387","display_name":"Jonathan Bard","orcid":"https://orcid.org/0000-0002-4422-9726"},"institutions":[{"id":"https://openalex.org/I1309316440","display_name":"Developmental Studies Center","ror":"https://ror.org/03hgang94","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1309316440"]},{"id":"https://openalex.org/I98677209","display_name":"University of Edinburgh","ror":"https://ror.org/01nrxwf90","country_code":"GB","type":"education","lineage":["https://openalex.org/I98677209"]}],"countries":["GB","US"],"is_corresponding":true,"raw_author_name":"J. Bard","raw_affiliation_strings":["Department of Biomedical Sciences, University of Edinburgh, UK. j.bard@ed.ac.uk","Reader in developmental anatomy at Edinburgh University. His current interests are constructing ontologies of developmental anatomy for embryo databases and studying the development of the mouse kidney"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biomedical Sciences, University of Edinburgh, UK. j.bard@ed.ac.uk","institution_ids":["https://openalex.org/I98677209"]},{"raw_affiliation_string":"Reader in developmental anatomy at Edinburgh University. His current interests are constructing ontologies of developmental anatomy for embryo databases and studying the development of the mouse kidney","institution_ids":["https://openalex.org/I1309316440"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5041987387"],"corresponding_institution_ids":["https://openalex.org/I1309316440","https://openalex.org/I98677209"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":null,"fwci":0.8951,"has_fulltext":false,"cited_by_count":11,"citation_normalized_percentile":{"value":0.72791235,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"2","issue":"3","first_page":"289","last_page":"299"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.9973999857902527,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.980400025844574,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5060262084007263},{"id":"https://openalex.org/keywords/function","display_name":"Function (biology)","score":0.46483421325683594},{"id":"https://openalex.org/keywords/focus","display_name":"Focus (optics)","score":0.44350746273994446},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.4296819865703583},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4279882311820984},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.38027405738830566},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3597959280014038},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.15778270363807678}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5060262084007263},{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.46483421325683594},{"id":"https://openalex.org/C192209626","wikidata":"https://www.wikidata.org/wiki/Q190909","display_name":"Focus (optics)","level":2,"score":0.44350746273994446},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.4296819865703583},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4279882311820984},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.38027405738830566},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3597959280014038},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.15778270363807678},{"id":"https://openalex.org/C120665830","wikidata":"https://www.wikidata.org/wiki/Q14620","display_name":"Optics","level":1,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000013","descriptor_name":"Congenital Abnormalities","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D000013","descriptor_name":"Congenital Abnormalities","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D000013","descriptor_name":"Congenital Abnormalities","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D000715","descriptor_name":"Anatomy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000715","descriptor_name":"Anatomy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000715","descriptor_name":"Anatomy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015509","descriptor_name":"Developmental Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015509","descriptor_name":"Developmental Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015509","descriptor_name":"Developmental Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bib/2.3.289","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/2.3.289","pdf_url":"https://academic.oup.com/bib/article-pdf/2/3/289/9731773/289.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:11589589","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/11589589","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bib/2.3.289","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/2.3.289","pdf_url":"https://academic.oup.com/bib/article-pdf/2/3/289/9731773/289.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Industry, innovation and infrastructure","id":"https://metadata.un.org/sdg/9","score":0.6499999761581421}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2120604485.pdf"},"referenced_works_count":6,"referenced_works":["https://openalex.org/W1981021538","https://openalex.org/W1993591791","https://openalex.org/W2018576351","https://openalex.org/W2036314401","https://openalex.org/W2112493404","https://openalex.org/W3025343153"],"related_works":["https://openalex.org/W2012531322","https://openalex.org/W2785900585","https://openalex.org/W2353730437","https://openalex.org/W2490303674","https://openalex.org/W2609066826","https://openalex.org/W2810752900","https://openalex.org/W3186538219","https://openalex.org/W2365677836","https://openalex.org/W2531295127","https://openalex.org/W2355063696"],"abstract_inverted_index":{"A":[0],"central":[1],"problem":[2],"in":[3,61,83,115,140],"current":[4],"biology":[5],"is":[6,20,104,149],"elucidating":[7],"the":[8,105,125,138,146,152,164,175],"molecular":[9,172],"networks":[10,110,173],"that":[11,45,122],"drive":[12],"developmental":[13,120],"change":[14],"and":[15,34,38,74,90,98,133,151,158,166,174],"physiological":[16],"function.":[17],"Such":[18],"knowledge":[19],"needed":[21],"partly":[22,27,35],"to":[23,28,31,36,79,94,154],"understand":[24,37],"these":[25,109],"networks,":[26],"be":[29,80,95,160],"able":[30],"manipulate":[32],"them,":[33],"help":[39],"treat":[40],"those":[41],"human":[42],"congenital":[43,179],"abnormalities":[44],"arise":[46],"as":[47],"a":[48],"result":[49],"of":[50,58,81,87,119,178],"mutation.":[51],"Thus":[52],"far,":[53],"bioinformatics":[54,78],"technology":[55,73],"has":[56,69],"been":[57,70],"limited":[59],"use":[60,82],"this":[62,84,103],"enterprise,":[63],"mainly":[64],"because":[65],"its":[66],"core":[67],"focus":[68],"on":[71],"sequence":[72],"data":[75,92],"archiving.":[76],"For":[77],"next":[85],"tier":[86],"investigations,":[88],"genetic":[89,176],"protein":[91],"need":[93],"both":[96],"archived":[97],"searchable":[99],"by":[100],"tissue":[101],"since":[102],"level":[106],"at":[107],"which":[108,155],"operate.":[111],"The":[112],"resulting":[113],"databases":[114],"turn":[116],"require":[117],"ontologies":[118],"anatomy":[121],"can":[123],"provide":[124],"formal":[126],"infrastructure":[127],"for":[128,145,170],"handling":[129],"gene":[130],"expression,":[131],"microarray":[132],"other":[134],"tissue-based":[135],"data.":[136],"Here,":[137],"progress":[139],"making":[141],"such":[142],"ontologies,":[143],"particularly":[144],"developing":[147],"mouse,":[148],"reported":[150],"uses":[153],"they":[156],"are":[157,181],"will":[159],"put,":[161],"together":[162],"with":[163],"resources":[165],"tools":[167],"currently":[168],"available":[169],"investigating":[171],"basis":[177],"abnormalities,":[180],"considered.":[182]},"counts_by_year":[],"updated_date":"2026-07-30T17:31:21.811387","created_date":"2025-10-10T00:00:00"}
