{"id":"https://openalex.org/W2028339001","doi":"https://doi.org/10.1093/nar/gkp1004","title":"The Immune Epitope Database 2.0","display_name":"The Immune Epitope Database 2.0","publication_year":2009,"publication_date":"2009-11-10","ids":{"openalex":"https://openalex.org/W2028339001","doi":"https://doi.org/10.1093/nar/gkp1004","mag":"2028339001","pmid":"https://pubmed.ncbi.nlm.nih.gov/19906713"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkp1004","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkp1004","pdf_url":"https://academic.oup.com/nar/article-pdf/38/suppl_1/D854/16771013/gkp1004.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/38/suppl_1/D854/16771013/gkp1004.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5069243187","display_name":"Randi Vita","orcid":"https://orcid.org/0000-0001-8957-7612"},"institutions":[{"id":"https://openalex.org/I1311191458","display_name":"La Jolla Institute for Immunology","ror":"https://ror.org/05vkpd318","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1311191458"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Randi Vita","raw_affiliation_strings":["La Jolla Institute for Allergy and Immunology, Center For Infectious Disease, Allergy and Asthma Research, 9420 Athena Circle, La Jolla, CA 92037, USA. rvita@liai.org","La Jolla Institute for Allergy and Immunology, Center For Infectious Disease, Allergy and Asthma Research, 9420 Athena Circle, La Jolla, CA 92037, USA"],"affiliations":[{"raw_affiliation_string":"La Jolla Institute for Allergy and Immunology, Center For Infectious Disease, Allergy and Asthma Research, 9420 Athena Circle, La Jolla, CA 92037, USA. rvita@liai.org","institution_ids":["https://openalex.org/I1311191458"]},{"raw_affiliation_string":"La Jolla Institute for Allergy and Immunology, Center For Infectious Disease, Allergy and Asthma Research, 9420 Athena Circle, La Jolla, CA 92037, USA","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002661827","display_name":"Laura Zarebski","orcid":null},"institutions":[{"id":"https://openalex.org/I1311191458","display_name":"La Jolla Institute for Immunology","ror":"https://ror.org/05vkpd318","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1311191458"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Laura Zarebski","raw_affiliation_strings":["La Jolla Institute for Allergy and Immunology, Center For Infectious Disease, Allergy and Asthma Research, 9420 Athena Circle, La Jolla, CA 92037, 2Science Applications International Corporation, IEDB, San Diego, CA, USA and 3Department of Systems Biology, Technical University of Denmark, Lyngby, Denmark","La Jolla Institute For Allergy & Immunology, San Diego, United States"],"affiliations":[{"raw_affiliation_string":"La Jolla Institute for Allergy and Immunology, Center For Infectious Disease, Allergy and Asthma Research, 9420 Athena Circle, La Jolla, CA 92037, 2Science Applications International Corporation, IEDB, San Diego, CA, USA and 3Department of Systems Biology, Technical University of Denmark, Lyngby, Denmark","institution_ids":["https://openalex.org/I1311191458"]},{"raw_affiliation_string":"La Jolla Institute For Allergy & Immunology, San Diego, United States","institution_ids":["https://openalex.org/I1311191458"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063725110","display_name":"Jason Greenbaum","orcid":"https://orcid.org/0000-0002-1381-0390"},"institutions":[{"id":"https://openalex.org/I1311191458","display_name":"La Jolla Institute for Immunology","ror":"https://ror.org/05vkpd318","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1311191458"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jason A. Greenbaum","raw_affiliation_strings":["La Jolla Institute for Allergy and Immunology, Center For Infectious Disease, Allergy and Asthma Research, 9420 Athena Circle, La Jolla, CA 92037, 2Science Applications International Corporation, IEDB, San Diego, CA, USA and 3Department of Systems Biology, Technical University of Denmark, Lyngby, Denmark","La Jolla Institute For Allergy & Immunology, San Diego, United States"],"affiliations":[{"raw_affiliation_string":"La Jolla Institute for Allergy and Immunology, Center For Infectious Disease, Allergy and Asthma Research, 9420 Athena Circle, La Jolla, CA 92037, 2Science Applications International Corporation, IEDB, San Diego, CA, USA and 3Department of Systems Biology, Technical University of Denmark, Lyngby, Denmark","institution_ids":["https://openalex.org/I1311191458"]},{"raw_affiliation_string":"La Jolla Institute For Allergy & Immunology, San Diego, United States","institution_ids":["https://openalex.org/I1311191458"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5048340582","display_name":"Hussein Emami","orcid":null},"institutions":[{"id":"https://openalex.org/I1311191458","display_name":"La Jolla Institute for Immunology","ror":"https://ror.org/05vkpd318","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1311191458"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Hussein Emami","raw_affiliation_strings":["La Jolla Institute for Allergy and Immunology, Center For Infectious Disease, Allergy and Asthma Research, 9420 Athena Circle, La Jolla, CA 92037, 2Science Applications International Corporation, IEDB, San Diego, CA, USA and 3Department of Systems Biology, Technical University of Denmark, Lyngby, Denmark","La Jolla Institute For Allergy & Immunology, San Diego, United States"],"affiliations":[{"raw_affiliation_string":"La Jolla Institute for Allergy and Immunology, Center For Infectious Disease, Allergy and Asthma Research, 9420 Athena Circle, La Jolla, CA 92037, 2Science Applications International Corporation, IEDB, San Diego, CA, USA and 3Department of Systems Biology, Technical University of Denmark, Lyngby, Denmark","institution_ids":["https://openalex.org/I1311191458"]},{"raw_affiliation_string":"La Jolla Institute For Allergy & Immunology, San Diego, United States","institution_ids":["https://openalex.org/I1311191458"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004763412","display_name":"Ilka Hoof","orcid":"https://orcid.org/0000-0003-3827-7227"},"institutions":[{"id":"https://openalex.org/I1311191458","display_name":"La Jolla Institute for Immunology","ror":"https://ror.org/05vkpd318","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1311191458"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ilka Hoof","raw_affiliation_strings":["La Jolla Institute for Allergy and Immunology, Center For Infectious Disease, Allergy and Asthma Research, 9420 Athena Circle, La Jolla, CA 92037, 2Science Applications International Corporation, IEDB, San Diego, CA, USA and 3Department of Systems Biology, Technical University of Denmark, Lyngby, Denmark","La Jolla Institute For Allergy & Immunology, San Diego, United States"],"affiliations":[{"raw_affiliation_string":"La Jolla Institute for Allergy and Immunology, Center For Infectious Disease, Allergy and Asthma Research, 9420 Athena Circle, La Jolla, CA 92037, 2Science Applications International Corporation, IEDB, San Diego, CA, USA and 3Department of Systems Biology, Technical University of Denmark, Lyngby, Denmark","institution_ids":["https://openalex.org/I1311191458"]},{"raw_affiliation_string":"La Jolla Institute For Allergy & Immunology, San Diego, United States","institution_ids":["https://openalex.org/I1311191458"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088422039","display_name":"Nima Salimi","orcid":"https://orcid.org/0000-0002-4522-9998"},"institutions":[{"id":"https://openalex.org/I1311191458","display_name":"La Jolla Institute for Immunology","ror":"https://ror.org/05vkpd318","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1311191458"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Nima Salimi","raw_affiliation_strings":["La Jolla Institute for Allergy and Immunology, Center For Infectious Disease, Allergy and Asthma Research, 9420 Athena Circle, La Jolla, CA 92037, 2Science Applications International Corporation, IEDB, San Diego, CA, USA and 3Department of Systems Biology, Technical University of Denmark, Lyngby, Denmark","La Jolla Institute For Allergy & Immunology, San Diego, United States"],"affiliations":[{"raw_affiliation_string":"La Jolla Institute for Allergy and Immunology, Center For Infectious Disease, Allergy and Asthma Research, 9420 Athena Circle, La Jolla, CA 92037, 2Science Applications International Corporation, IEDB, San Diego, CA, USA and 3Department of Systems Biology, Technical University of Denmark, Lyngby, Denmark","institution_ids":["https://openalex.org/I1311191458"]},{"raw_affiliation_string":"La Jolla Institute For Allergy & Immunology, San Diego, United States","institution_ids":["https://openalex.org/I1311191458"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5057826457","display_name":"Rohini Damle","orcid":null},"institutions":[{"id":"https://openalex.org/I1311191458","display_name":"La Jolla Institute for Immunology","ror":"https://ror.org/05vkpd318","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1311191458"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Rohini Damle","raw_affiliation_strings":["La Jolla Institute for Allergy and Immunology, Center For Infectious Disease, Allergy and Asthma Research, 9420 Athena Circle, La Jolla, CA 92037, 2Science Applications International Corporation, IEDB, San Diego, CA, USA and 3Department of Systems Biology, Technical University of Denmark, Lyngby, Denmark","La Jolla Institute For Allergy & Immunology, San Diego, United States"],"affiliations":[{"raw_affiliation_string":"La Jolla Institute for Allergy and Immunology, Center For Infectious Disease, Allergy and Asthma Research, 9420 Athena Circle, La Jolla, CA 92037, 2Science Applications International Corporation, IEDB, San Diego, CA, USA and 3Department of Systems Biology, Technical University of Denmark, Lyngby, Denmark","institution_ids":["https://openalex.org/I1311191458"]},{"raw_affiliation_string":"La Jolla Institute For Allergy & Immunology, San Diego, United States","institution_ids":["https://openalex.org/I1311191458"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010966529","display_name":"Alessandro Sette","orcid":"https://orcid.org/0000-0001-7013-2250"},"institutions":[{"id":"https://openalex.org/I1311191458","display_name":"La Jolla Institute for Immunology","ror":"https://ror.org/05vkpd318","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1311191458"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Alessandro Sette","raw_affiliation_strings":["La Jolla Institute for Allergy and Immunology, Center For Infectious Disease, Allergy and Asthma Research, 9420 Athena Circle, La Jolla, CA 92037, 2Science Applications International Corporation, IEDB, San Diego, CA, USA and 3Department of Systems Biology, Technical University of Denmark, Lyngby, Denmark","La Jolla Institute For Allergy & Immunology, San Diego, United States"],"affiliations":[{"raw_affiliation_string":"La Jolla Institute for Allergy and Immunology, Center For Infectious Disease, Allergy and Asthma Research, 9420 Athena Circle, La Jolla, CA 92037, 2Science Applications International Corporation, IEDB, San Diego, CA, USA and 3Department of Systems Biology, Technical University of Denmark, Lyngby, Denmark","institution_ids":["https://openalex.org/I1311191458"]},{"raw_affiliation_string":"La Jolla Institute For Allergy & Immunology, San Diego, United States","institution_ids":["https://openalex.org/I1311191458"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5023547268","display_name":"Bjoern Peters","orcid":"https://orcid.org/0000-0002-8457-6693"},"institutions":[{"id":"https://openalex.org/I1311191458","display_name":"La Jolla Institute for Immunology","ror":"https://ror.org/05vkpd318","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1311191458"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Bjoern Peters","raw_affiliation_strings":["La Jolla Institute for Allergy and Immunology, Center For Infectious Disease, Allergy and Asthma Research, 9420 Athena Circle, La Jolla, CA 92037, 2Science Applications International Corporation, IEDB, San Diego, CA, USA and 3Department of Systems Biology, Technical University of Denmark, Lyngby, Denmark","La Jolla Institute For Allergy & Immunology, San Diego, United States"],"affiliations":[{"raw_affiliation_string":"La Jolla Institute for Allergy and Immunology, Center For Infectious Disease, Allergy and Asthma Research, 9420 Athena Circle, La Jolla, CA 92037, 2Science Applications International Corporation, IEDB, San Diego, CA, USA and 3Department of Systems Biology, Technical University of Denmark, Lyngby, Denmark","institution_ids":["https://openalex.org/I1311191458"]},{"raw_affiliation_string":"La Jolla Institute For Allergy & Immunology, San Diego, United States","institution_ids":["https://openalex.org/I1311191458"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":9,"corresponding_author_ids":["https://openalex.org/A5069243187"],"corresponding_institution_ids":["https://openalex.org/I1311191458"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":20.6951,"has_fulltext":true,"cited_by_count":642,"citation_normalized_percentile":{"value":0.99692275,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"38","issue":"suppl_1","first_page":"D854","last_page":"D862"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11016","display_name":"Monoclonal and Polyclonal Antibodies Research","score":0.9958999752998352,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T13326","display_name":"Biochemical and Structural Characterization","score":0.9930999875068665,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/epitope","display_name":"Epitope","score":0.9497354030609131},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.831507682800293},{"id":"https://openalex.org/keywords/major-histocompatibility-complex","display_name":"Major histocompatibility complex","score":0.7433101534843445},{"id":"https://openalex.org/keywords/immune-system","display_name":"Immune system","score":0.5536377429962158},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4836615025997162},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.43298307061195374},{"id":"https://openalex.org/keywords/antigen","display_name":"Antigen","score":0.3641499876976013},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.3239523470401764},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.08155238628387451}],"concepts":[{"id":"https://openalex.org/C195616568","wikidata":"https://www.wikidata.org/wiki/Q128711","display_name":"Epitope","level":3,"score":0.9497354030609131},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.831507682800293},{"id":"https://openalex.org/C207936829","wikidata":"https://www.wikidata.org/wiki/Q423163","display_name":"Major histocompatibility complex","level":3,"score":0.7433101534843445},{"id":"https://openalex.org/C8891405","wikidata":"https://www.wikidata.org/wiki/Q1059","display_name":"Immune system","level":2,"score":0.5536377429962158},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4836615025997162},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.43298307061195374},{"id":"https://openalex.org/C147483822","wikidata":"https://www.wikidata.org/wiki/Q103537","display_name":"Antigen","level":2,"score":0.3641499876976013},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.3239523470401764},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.08155238628387451}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000939","descriptor_name":"Epitopes","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D000939","descriptor_name":"Epitopes","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D000939","descriptor_name":"Epitopes","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D003141","descriptor_name":"Communicable Diseases","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D003141","descriptor_name":"Communicable Diseases","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D003141","descriptor_name":"Communicable Diseases","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D003141","descriptor_name":"Communicable Diseases","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D003141","descriptor_name":"Communicable Diseases","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D003141","descriptor_name":"Communicable Diseases","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007107","descriptor_name":"Immune System","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D007107","descriptor_name":"Immune System","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D007107","descriptor_name":"Immune System","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D007125","descriptor_name":"Immunogenetics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D007125","descriptor_name":"Immunogenetics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D007125","descriptor_name":"Immunogenetics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D008285","descriptor_name":"Major Histocompatibility Complex","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008285","descriptor_name":"Major Histocompatibility Complex","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008285","descriptor_name":"Major Histocompatibility Complex","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1093/nar/gkp1004","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkp1004","pdf_url":"https://academic.oup.com/nar/article-pdf/38/suppl_1/D854/16771013/gkp1004.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:19906713","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/19906713","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:open-archive.highwire.org:nar:38/suppl_1/D854","is_oa":false,"landing_page_url":"http://nar.oxfordjournals.org/cgi/content/short/38/suppl_1/D854","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"},{"id":"pmh:oai:pubmedcentral.nih.gov:2808938","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2808938","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"},{"id":"pmh:oai:pure.atira.dk:publications/2248bbfa-5d8c-4b05-a920-b22bf0ef8b61","is_oa":true,"landing_page_url":"https://orbit.dtu.dk/en/publications/2248bbfa-5d8c-4b05-a920-b22bf0ef8b61","pdf_url":null,"source":{"id":"https://openalex.org/S4306400705","display_name":"Technical University of Denmark, DTU Orbit (Technical University of Denmark, DTU)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I96673099","host_organization_name":"Technical University of Denmark","host_organization_lineage":["https://openalex.org/I96673099"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Hoof , I , Vita , R , Zarebski , L , Greenbaum , JA , Emami , H , Salimi , N , Damle , R , Sette , A &amp; Peters , B 2010 , ' The Immune Epitope Database 2.0 ' , Nucleic Acids Research , vol. 38 , pp. 854-862 . https://doi.org/10.1093/nar/gkp1004","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1093/nar/gkp1004","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkp1004","pdf_url":"https://academic.oup.com/nar/article-pdf/38/suppl_1/D854/16771013/gkp1004.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/3","display_name":"Good health and well-being","score":0.6800000071525574}],"awards":[],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2028339001.pdf","grobid_xml":"https://content.openalex.org/works/W2028339001.grobid-xml"},"referenced_works_count":20,"referenced_works":["https://openalex.org/W1540550673","https://openalex.org/W1543448539","https://openalex.org/W1795576732","https://openalex.org/W1967494780","https://openalex.org/W1979874740","https://openalex.org/W2025729280","https://openalex.org/W2028147409","https://openalex.org/W2033377040","https://openalex.org/W2046060933","https://openalex.org/W2059874211","https://openalex.org/W2068945309","https://openalex.org/W2096525273","https://openalex.org/W2100785155","https://openalex.org/W2117064132","https://openalex.org/W2123229604","https://openalex.org/W2130979001","https://openalex.org/W2144264324","https://openalex.org/W2161749616","https://openalex.org/W2916936443","https://openalex.org/W4250297812"],"related_works":["https://openalex.org/W1979044599","https://openalex.org/W2021824670","https://openalex.org/W2009867644","https://openalex.org/W2363997565","https://openalex.org/W1981120125","https://openalex.org/W3036615648","https://openalex.org/W2408448169","https://openalex.org/W2182598264","https://openalex.org/W2075879923","https://openalex.org/W2060253881"],"abstract_inverted_index":{"The":[0,32,142,159,179],"Immune":[1],"Epitope":[2],"Database":[3],"(IEDB,":[4],"www.iedb.org)":[5],"provides":[6],"a":[7],"catalog":[8],"of":[9,84,102,118,144,157],"experimentally":[10],"characterized":[11],"B":[12],"and":[13,27,43,66,75,116,188],"T":[14],"cell":[15],"epitopes,":[16],"as":[17,19,182,184],"well":[18,183],"data":[20,88,125],"on":[21,107],"Major":[22],"Histocompatibility":[23],"Complex":[24],"(MHC)":[25],"binding":[26],"MHC":[28,169],"ligand":[29],"elution":[30],"experiments.":[31],"database":[33,160,180],"represents":[34],"the":[35,44,82,87,96,132,155,195],"molecular":[36],"structures":[37],"recognized":[38,58],"by":[39,140,154,164],"adaptive":[40],"immune":[41,55],"receptors":[42],"experimental":[45,77],"contexts":[46],"in":[47,59,111,121,203],"which":[48,98,199],"these":[49],"molecules":[50],"were":[51,92,137],"determined":[52],"to":[53,131,147,151],"be":[54,129,152,162],"epitopes.":[56],"Epitopes":[57],"humans,":[60],"nonhuman":[61],"primates,":[62],"rodents,":[63],"pigs,":[64],"cats":[65],"all":[67,103],"other":[68,177],"tested":[69],"species":[70],"are":[71,79],"included.":[72],"Both":[73],"positive":[74],"negative":[76],"results":[78],"captured.":[80],"Over":[81],"course":[83],"4":[85],"years,":[86],"from":[89,95,134],"180,978":[90],"experiments":[91,136],"curated":[93],"manually":[94],"literature,":[97],"covers":[99],"approximately":[100],"99%":[101],"publicly":[104,201],"available":[105,202],"information":[106],"peptide":[108],"epitopes":[109,145],"mapped":[110,120],"infectious":[112],"agents":[113],"(excluding":[114],"HIV)":[115],"93%":[117],"those":[119],"allergens.":[122],"In":[123],"addition,":[124],"that":[126],"would":[127],"otherwise":[128],"unavailable":[130],"public":[133],"129,186":[135],"submitted":[138],"directly":[139],"investigators.":[141],"curation":[143],"related":[146],"autoimmunity":[148],"is":[149],"expected":[150],"completed":[153],"end":[156],"2010.":[158],"can":[161],"queried":[163],"epitope":[165],"structure,":[166,181],"source":[167],"organism,":[168,175],"restriction,":[170],"assay":[171],"type":[172],"or":[173],"host":[174],"among":[176],"criteria.":[178],"its":[185],"querying,":[186],"browsing":[187],"reporting":[189],"interfaces,":[190],"was":[191],"completely":[192],"redesigned":[193],"for":[194],"IEDB":[196],"2.0":[197],"release,":[198],"became":[200],"early":[204],"2009.":[205]},"counts_by_year":[{"year":2025,"cited_by_count":9},{"year":2024,"cited_by_count":9},{"year":2023,"cited_by_count":17},{"year":2022,"cited_by_count":15},{"year":2021,"cited_by_count":22},{"year":2020,"cited_by_count":31},{"year":2019,"cited_by_count":23},{"year":2018,"cited_by_count":35},{"year":2017,"cited_by_count":29},{"year":2016,"cited_by_count":50},{"year":2015,"cited_by_count":70},{"year":2014,"cited_by_count":86},{"year":2013,"cited_by_count":90},{"year":2012,"cited_by_count":59}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}
