{"id":"https://openalex.org/W3170771812","doi":"https://doi.org/10.1093/database/baab069","title":"OBO Foundry in 2021: operationalizing open data principles to evaluate ontologies","display_name":"OBO Foundry in 2021: operationalizing open data principles to evaluate ontologies","publication_year":2021,"publication_date":"2021-10-01","ids":{"openalex":"https://openalex.org/W3170771812","doi":"https://doi.org/10.1093/database/baab069","mag":"3170771812","pmid":"https://pubmed.ncbi.nlm.nih.gov/34697637"},"language":"en","primary_location":{"id":"doi:10.1093/database/baab069","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baab069","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baab069/40854912/baab069.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","datacite","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baab069/40854912/baab069.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5072483501","display_name":"Rebecca Jackson","orcid":"https://orcid.org/0000-0003-4871-5569"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Rebecca Jackson","raw_affiliation_strings":["Bend Informatics LLC, 20770 Double Peaks Drive, Bend, OR 97701, USA"],"affiliations":[{"raw_affiliation_string":"Bend Informatics LLC, 20770 Double Peaks Drive, Bend, OR 97701, USA","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040603724","display_name":"Nicolas Matentzoglu","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Nicolas Matentzoglu","raw_affiliation_strings":["Semanticly, 71-75 Shelton Street, London WC2H 9JQ, UK"],"affiliations":[{"raw_affiliation_string":"Semanticly, 71-75 Shelton Street, London WC2H 9JQ, UK","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5009238690","display_name":"James A. Overton","orcid":"https://orcid.org/0000-0001-5139-5557"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"James A Overton","raw_affiliation_strings":["Knocean Inc., 2-107 Quebec Ave., Toronto, ON M6P 2T3, Canada"],"affiliations":[{"raw_affiliation_string":"Knocean Inc., 2-107 Quebec Ave., Toronto, ON M6P 2T3, Canada","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5069243187","display_name":"Randi Vita","orcid":"https://orcid.org/0000-0001-8957-7612"},"institutions":[{"id":"https://openalex.org/I1311191458","display_name":"La Jolla Institute for Immunology","ror":"https://ror.org/05vkpd318","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1311191458"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Randi Vita","raw_affiliation_strings":["La Jolla Institute for Immunology, 9420 Athena Cir, La Jolla, CA 92037, USA"],"affiliations":[{"raw_affiliation_string":"La Jolla Institute for Immunology, 9420 Athena Cir, La Jolla, CA 92037, USA","institution_ids":["https://openalex.org/I1311191458"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5021056529","display_name":"James P. Balhoff","orcid":"https://orcid.org/0000-0002-8688-6599"},"institutions":[{"id":"https://openalex.org/I69048370","display_name":"Renaissance Computing Institute","ror":"https://ror.org/01s91ey96","country_code":"US","type":"education","lineage":["https://openalex.org/I137902535","https://openalex.org/I170897317","https://openalex.org/I69048370"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"James P Balhoff","raw_affiliation_strings":["Renaissance Computing Institute, University of North Carolina, 100 Europa Drive, Suite 540, Chapel Hill, NC 27517, USA"],"affiliations":[{"raw_affiliation_string":"Renaissance Computing Institute, University of North Carolina, 100 Europa Drive, Suite 540, Chapel Hill, NC 27517, USA","institution_ids":["https://openalex.org/I69048370"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091806083","display_name":"Pier Luigi Buttigieg","orcid":"https://orcid.org/0000-0002-4366-3088"},"institutions":[{"id":"https://openalex.org/I127251866","display_name":"Alfred-Wegener-Institut Helmholtz-Zentrum f\u00fcr Polar- und Meeresforschung","ror":"https://ror.org/032e6b942","country_code":"DE","type":"facility","lineage":["https://openalex.org/I127251866","https://openalex.org/I1305996414"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Pier Luigi Buttigieg","raw_affiliation_strings":["Alfred Wegener Institute, Helmholtz Center for Polar and Marine Research, Am Handelshafen 12, Bremerhaven 27570, Germany"],"affiliations":[{"raw_affiliation_string":"Alfred Wegener Institute, Helmholtz Center for Polar and Marine Research, Am Handelshafen 12, Bremerhaven 27570, Germany","institution_ids":["https://openalex.org/I127251866"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089928926","display_name":"Seth Carbon","orcid":"https://orcid.org/0000-0001-8244-1536"},"institutions":[{"id":"https://openalex.org/I148283060","display_name":"Lawrence Berkeley National Laboratory","ror":"https://ror.org/02jbv0t02","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Seth Carbon","raw_affiliation_strings":["Environmental Genomics and Systems Biology, Lawrence Berkeley National Laboratory, 1 Cyclotron Rd., Berkeley, CA 94720, USA"],"affiliations":[{"raw_affiliation_string":"Environmental Genomics and Systems Biology, Lawrence Berkeley National Laboratory, 1 Cyclotron Rd., Berkeley, CA 94720, USA","institution_ids":["https://openalex.org/I148283060"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008255694","display_name":"M\u00e9lanie Courtot","orcid":"https://orcid.org/0000-0002-9551-6370"},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Melanie Courtot","raw_affiliation_strings":["European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton CB10 1SD, UK"],"affiliations":[{"raw_affiliation_string":"European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton CB10 1SD, UK","institution_ids":["https://openalex.org/I1303153112"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5084833749","display_name":"Alexander D. Diehl","orcid":"https://orcid.org/0000-0001-9990-8331"},"institutions":[{"id":"https://openalex.org/I63190737","display_name":"University at Buffalo, State University of New York","ror":"https://ror.org/01y64my43","country_code":"US","type":"education","lineage":["https://openalex.org/I63190737"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Alexander D Diehl","raw_affiliation_strings":["Department of Biomedical Informatics, University at Buffalo, 77 Goodell St, Buffalo, NY 14203, USA"],"affiliations":[{"raw_affiliation_string":"Department of Biomedical Informatics, University at Buffalo, 77 Goodell St, Buffalo, NY 14203, USA","institution_ids":["https://openalex.org/I63190737"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5006394765","display_name":"Damion Dooley","orcid":"https://orcid.org/0000-0002-8844-9165"},"institutions":[{"id":"https://openalex.org/I18014758","display_name":"Simon Fraser University","ror":"https://ror.org/0213rcc28","country_code":"CA","type":"education","lineage":["https://openalex.org/I18014758"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Damion M Dooley","raw_affiliation_strings":["Centre for Infectious Disease Genomics and One Health, Simon Fraser University, 8888 University Dr, Burnaby, BC V5A 1S6, Canada"],"affiliations":[{"raw_affiliation_string":"Centre for Infectious Disease Genomics and One Health, Simon Fraser University, 8888 University Dr, Burnaby, BC V5A 1S6, Canada","institution_ids":["https://openalex.org/I18014758"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005828535","display_name":"William D. Duncan","orcid":"https://orcid.org/0000-0001-9625-1899"},"institutions":[{"id":"https://openalex.org/I148283060","display_name":"Lawrence Berkeley National Laboratory","ror":"https://ror.org/02jbv0t02","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"William D Duncan","raw_affiliation_strings":["Environmental Genomics and Systems Biology, Lawrence Berkeley National Laboratory, 1 Cyclotron Rd., Berkeley, CA 94720, USA"],"affiliations":[{"raw_affiliation_string":"Environmental Genomics and Systems Biology, Lawrence Berkeley National Laboratory, 1 Cyclotron Rd., Berkeley, CA 94720, USA","institution_ids":["https://openalex.org/I148283060"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031007073","display_name":"Nomi L. Harris","orcid":"https://orcid.org/0000-0001-6315-3707"},"institutions":[{"id":"https://openalex.org/I148283060","display_name":"Lawrence Berkeley National Laboratory","ror":"https://ror.org/02jbv0t02","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Nomi L Harris","raw_affiliation_strings":["Environmental Genomics and Systems Biology, Lawrence Berkeley National Laboratory, 1 Cyclotron Rd., Berkeley, CA 94720, USA"],"affiliations":[{"raw_affiliation_string":"Environmental Genomics and Systems Biology, Lawrence Berkeley National Laboratory, 1 Cyclotron Rd., Berkeley, CA 94720, USA","institution_ids":["https://openalex.org/I148283060"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064320417","display_name":"Melissa Haendel","orcid":"https://orcid.org/0000-0001-9114-8737"},"institutions":[{"id":"https://openalex.org/I921990950","display_name":"University of Colorado Denver","ror":"https://ror.org/02hh7en24","country_code":"US","type":"education","lineage":["https://openalex.org/I921990950"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Melissa A Haendel","raw_affiliation_strings":["Biochemistry and Molecular Genetics Department, University of Colorado School of Medicine, PO Box 6511, Aurora, CO 80045, USA"],"affiliations":[{"raw_affiliation_string":"Biochemistry and Molecular Genetics Department, University of Colorado School of Medicine, PO Box 6511, Aurora, CO 80045, USA","institution_ids":["https://openalex.org/I921990950"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076920798","display_name":"Suzanna Lewis","orcid":null},"institutions":[{"id":"https://openalex.org/I148283060","display_name":"Lawrence Berkeley National Laboratory","ror":"https://ror.org/02jbv0t02","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Suzanna E Lewis","raw_affiliation_strings":["Environmental Genomics and Systems Biology, Lawrence Berkeley National Laboratory, 1 Cyclotron Rd., Berkeley, CA 94720, USA"],"affiliations":[{"raw_affiliation_string":"Environmental Genomics and Systems Biology, Lawrence Berkeley National Laboratory, 1 Cyclotron Rd., Berkeley, CA 94720, USA","institution_ids":["https://openalex.org/I148283060"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005555412","display_name":"Darren A. Natale","orcid":"https://orcid.org/0000-0001-5809-9523"},"institutions":[{"id":"https://openalex.org/I184565670","display_name":"Georgetown University","ror":"https://ror.org/05vzafd60","country_code":"US","type":"education","lineage":["https://openalex.org/I184565670"]},{"id":"https://openalex.org/I2799903593","display_name":"Georgetown University Medical Center","ror":"https://ror.org/00hjz7x27","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I2799903593"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Darren A Natale","raw_affiliation_strings":["Department of Biochemistry and Molecular & Cellular Biology, Georgetown University Medical Center, 2115 Wisconsin Avenue NW, Washington, DC 20007, USA"],"affiliations":[{"raw_affiliation_string":"Department of Biochemistry and Molecular & Cellular Biology, Georgetown University Medical Center, 2115 Wisconsin Avenue NW, Washington, DC 20007, USA","institution_ids":["https://openalex.org/I2799903593","https://openalex.org/I184565670"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053103903","display_name":"David Osumi-Sutherland","orcid":"https://orcid.org/0000-0002-7073-9172"},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"David Osumi-Sutherland","raw_affiliation_strings":["European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton CB10 1SD, UK"],"affiliations":[{"raw_affiliation_string":"European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton CB10 1SD, UK","institution_ids":["https://openalex.org/I1303153112"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053171726","display_name":"Alan Ruttenberg","orcid":"https://orcid.org/0000-0002-1604-3078"},"institutions":[{"id":"https://openalex.org/I63190737","display_name":"University at Buffalo, State University of New York","ror":"https://ror.org/01y64my43","country_code":"US","type":"education","lineage":["https://openalex.org/I63190737"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Alan Ruttenberg","raw_affiliation_strings":["Department of Biomedical Informatics, University at Buffalo, 77 Goodell St, Buffalo, NY 14203, USA"],"affiliations":[{"raw_affiliation_string":"Department of Biomedical Informatics, University at Buffalo, 77 Goodell St, Buffalo, NY 14203, USA","institution_ids":["https://openalex.org/I63190737"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089183537","display_name":"Lynn M. Schriml","orcid":"https://orcid.org/0000-0001-8910-9851"},"institutions":[{"id":"https://openalex.org/I126744593","display_name":"University of Maryland, Baltimore","ror":"https://ror.org/04rq5mt64","country_code":"US","type":"education","lineage":["https://openalex.org/I126744593"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Lynn M Schriml","raw_affiliation_strings":["School of Medicine, University of Maryland, 655 W Baltimore St S, Baltimore, MD 21201, USA"],"affiliations":[{"raw_affiliation_string":"School of Medicine, University of Maryland, 655 W Baltimore St S, Baltimore, MD 21201, USA","institution_ids":["https://openalex.org/I126744593"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051216244","display_name":"Barry Smith","orcid":"https://orcid.org/0000-0003-1384-116X"},"institutions":[{"id":"https://openalex.org/I63190737","display_name":"University at Buffalo, State University of New York","ror":"https://ror.org/01y64my43","country_code":"US","type":"education","lineage":["https://openalex.org/I63190737"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Barry Smith","raw_affiliation_strings":["Department of Biomedical Informatics, University at Buffalo, 77 Goodell St, Buffalo, NY 14203, USA"],"affiliations":[{"raw_affiliation_string":"Department of Biomedical Informatics, University at Buffalo, 77 Goodell St, Buffalo, NY 14203, USA","institution_ids":["https://openalex.org/I63190737"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5069334659","display_name":"Christian J. Stoeckert","orcid":"https://orcid.org/0000-0002-5714-991X"},"institutions":[{"id":"https://openalex.org/I79576946","display_name":"University of Pennsylvania","ror":"https://ror.org/00b30xv10","country_code":"US","type":"education","lineage":["https://openalex.org/I79576946"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Christian J Stoeckert Jr.","raw_affiliation_strings":["Department of Genetics and Institute for Biomedical Informatics, Perelman School of Medicine, University of Pennsylvania, 3400 Civic Center Blvd, Philadelphia, PA 19104, USA"],"affiliations":[{"raw_affiliation_string":"Department of Genetics and Institute for Biomedical Informatics, Perelman School of Medicine, University of Pennsylvania, 3400 Civic Center Blvd, Philadelphia, PA 19104, USA","institution_ids":["https://openalex.org/I79576946"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041814853","display_name":"Nicole Vasilevsky","orcid":"https://orcid.org/0000-0001-5208-3432"},"institutions":[{"id":"https://openalex.org/I921990950","display_name":"University of Colorado Denver","ror":"https://ror.org/02hh7en24","country_code":"US","type":"education","lineage":["https://openalex.org/I921990950"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Nicole A Vasilevsky","raw_affiliation_strings":["Biochemistry and Molecular Genetics Department, University of Colorado School of Medicine, PO Box 6511, Aurora, CO 80045, USA"],"affiliations":[{"raw_affiliation_string":"Biochemistry and Molecular Genetics Department, University of Colorado School of Medicine, PO Box 6511, Aurora, CO 80045, USA","institution_ids":["https://openalex.org/I921990950"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5015253000","display_name":"Ramona Walls","orcid":"https://orcid.org/0000-0001-8815-0078"},"institutions":[{"id":"https://openalex.org/I2801686373","display_name":"Critical Path Institute","ror":"https://ror.org/02mgtg880","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I2801686373"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ramona L Walls","raw_affiliation_strings":["Critical Path Institute, 1730 E River Rd #200, Tucson, AZ 85718, USA"],"affiliations":[{"raw_affiliation_string":"Critical Path Institute, 1730 E River Rd #200, Tucson, AZ 85718, USA","institution_ids":["https://openalex.org/I2801686373"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100652277","display_name":"Jie Zheng","orcid":"https://orcid.org/0000-0002-2999-0103"},"institutions":[{"id":"https://openalex.org/I79576946","display_name":"University of Pennsylvania","ror":"https://ror.org/00b30xv10","country_code":"US","type":"education","lineage":["https://openalex.org/I79576946"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jie Zheng","raw_affiliation_strings":["Department of Genetics and Institute for Biomedical Informatics, Perelman School of Medicine, University of Pennsylvania, 3400 Civic Center Blvd, Philadelphia, PA 19104, USA"],"affiliations":[{"raw_affiliation_string":"Department of Genetics and Institute for Biomedical Informatics, Perelman School of Medicine, University of Pennsylvania, 3400 Civic Center Blvd, Philadelphia, PA 19104, USA","institution_ids":["https://openalex.org/I79576946"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002223413","display_name":"Chris Mungall","orcid":"https://orcid.org/0000-0002-6601-2165"},"institutions":[{"id":"https://openalex.org/I148283060","display_name":"Lawrence Berkeley National Laboratory","ror":"https://ror.org/02jbv0t02","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Christopher J Mungall","raw_affiliation_strings":["Environmental Genomics and Systems Biology, Lawrence Berkeley National Laboratory, 1 Cyclotron Rd., Berkeley, CA 94720, USA"],"affiliations":[{"raw_affiliation_string":"Environmental Genomics and Systems Biology, Lawrence Berkeley National Laboratory, 1 Cyclotron Rd., Berkeley, CA 94720, USA","institution_ids":["https://openalex.org/I148283060"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5023547268","display_name":"Bjoern Peters","orcid":"https://orcid.org/0000-0002-8457-6693"},"institutions":[{"id":"https://openalex.org/I1311191458","display_name":"La Jolla Institute for Immunology","ror":"https://ror.org/05vkpd318","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1311191458"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Bjoern Peters","raw_affiliation_strings":["La Jolla Institute for Immunology, 9420 Athena Cir, La Jolla, CA 92037, USA"],"affiliations":[{"raw_affiliation_string":"La Jolla Institute for Immunology, 9420 Athena Cir, La Jolla, CA 92037, USA","institution_ids":["https://openalex.org/I1311191458"]}]}],"institutions":[],"countries_distinct_count":4,"institutions_distinct_count":25,"corresponding_author_ids":["https://openalex.org/A5002223413","https://openalex.org/A5023547268"],"corresponding_institution_ids":["https://openalex.org/I1311191458","https://openalex.org/I148283060"],"apc_list":{"value":1415,"currency":"GBP","value_usd":1735},"apc_paid":{"value":1415,"currency":"GBP","value_usd":1735},"fwci":11.3872,"has_fulltext":true,"cited_by_count":204,"citation_normalized_percentile":{"value":0.99210592,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":100},"biblio":{"volume":"2021","issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9980999827384949,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9980999827384949,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.9922999739646912,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11937","display_name":"Research Data Management Practices","score":0.972100019454956,"subfield":{"id":"https://openalex.org/subfields/1710","display_name":"Information Systems"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6554346680641174},{"id":"https://openalex.org/keywords/operationalization","display_name":"Operationalization","score":0.6542301177978516},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.48230648040771484},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.42680540680885315}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6554346680641174},{"id":"https://openalex.org/C9354725","wikidata":"https://www.wikidata.org/wiki/Q286017","display_name":"Operationalization","level":2,"score":0.6542301177978516},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.48230648040771484},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.42680540680885315},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000071253","descriptor_name":"Metadata","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000071253","descriptor_name":"Metadata","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000071253","descriptor_name":"Metadata","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":11,"locations":[{"id":"doi:10.1093/database/baab069","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baab069","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baab069/40854912/baab069.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},{"id":"pmid:34697637","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/34697637","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database : the journal of biological databases and curation","raw_type":null},{"id":"pmh:oai:osti.gov:1834582","is_oa":true,"landing_page_url":"https://www.osti.gov/biblio/1834582","pdf_url":"https://www.osti.gov/servlets/purl/1834582","source":{"id":"https://openalex.org/S4306402487","display_name":"OSTI OAI (U.S. Department of Energy Office of Scientific and Technical Information)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I139351228","host_organization_name":"Office of Scientific and Technical Information","host_organization_lineage":["https://openalex.org/I139351228"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null},{"id":"pmh:ark:/13030/qt1pr0q0n1","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null},{"id":"pmh:oai:escholarship.org/ark:/13030/qt1pr0q0n1","is_oa":false,"landing_page_url":"https://escholarship.org/uc/item/1pr0q0n1","pdf_url":null,"source":{"id":"https://openalex.org/S4306400115","display_name":"eScholarship (California Digital Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I2801248553","host_organization_name":"California Digital Library","host_organization_lineage":["https://openalex.org/I2801248553"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"article"},{"id":"pmh:oai:europepmc.org:7434930","is_oa":true,"landing_page_url":"http://europepmc.org/pmc/articles/PMC8546234","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:philarchive.org/rec/JACOFI","is_oa":false,"landing_page_url":"https://philarchive.org/rec/JACOFI","pdf_url":null,"source":{"id":"https://openalex.org/S4306402130","display_name":"PhilPapers (PhilPapers Foundation)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:philpapers.org/rec/JACOFI","is_oa":false,"landing_page_url":"https://philpapers.org/rec/JACOFI","pdf_url":null,"source":{"id":"https://openalex.org/S4306402131","display_name":"PhilPapers (PhilPapers Foundation)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:pubmedcentral.nih.gov:8546234","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8546234","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Database (Oxford)","raw_type":"Text"},{"id":"doi:10.25504/fairsharing.01fd84","is_oa":true,"landing_page_url":"https://doi.org/10.25504/fairsharing.01fd84","pdf_url":null,"source":{"id":"https://openalex.org/S7407053452","display_name":"FAIRsharing.org","issn_l":null,"issn":[],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"dataset"},{"id":"doi:10.25504/fairsharing.09616b","is_oa":true,"landing_page_url":"https://doi.org/10.25504/fairsharing.09616b","pdf_url":null,"source":{"id":"https://openalex.org/S7407053452","display_name":"FAIRsharing.org","issn_l":null,"issn":[],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"dataset"}],"best_oa_location":{"id":"doi:10.1093/database/baab069","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baab069","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baab069/40854912/baab069.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.5099999904632568,"id":"https://metadata.un.org/sdg/17","display_name":"Partnerships for the goals"}],"awards":[{"id":"https://openalex.org/G836559973","display_name":null,"funder_award_id":"R24HG010032","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3170771812.pdf","grobid_xml":"https://content.openalex.org/works/W3170771812.grobid-xml"},"referenced_works_count":18,"referenced_works":["https://openalex.org/W1571901602","https://openalex.org/W1740034975","https://openalex.org/W1744779065","https://openalex.org/W1967176062","https://openalex.org/W2003012803","https://openalex.org/W2113142309","https://openalex.org/W2123152121","https://openalex.org/W2148118756","https://openalex.org/W2302501749","https://openalex.org/W2487956853","https://openalex.org/W2498137302","https://openalex.org/W2770044072","https://openalex.org/W2773787581","https://openalex.org/W2888427035","https://openalex.org/W2965518110","https://openalex.org/W3170771812","https://openalex.org/W6634242532","https://openalex.org/W6637796072"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2899084033","https://openalex.org/W2748952813","https://openalex.org/W2944277854","https://openalex.org/W2258359646","https://openalex.org/W2493324121","https://openalex.org/W4234402960","https://openalex.org/W4210958110","https://openalex.org/W2483613126","https://openalex.org/W4210994448"],"abstract_inverted_index":{"Biological":[0,45],"ontologies":[1,29,143,166],"are":[2,35],"used":[3],"to":[4,41,53,138,145,169,171],"organize,":[5],"curate":[6,139],"and":[7,46,62,92,113,121,144,185,195,207,218],"interpret":[8],"the":[9,58,81,107,156,201,204,209],"vast":[10],"quantities":[11],"of":[12,64,70,117,160,203,212],"data":[13,214],"arising":[14],"from":[15],"biological":[16],"experiments.":[17],"While":[18],"this":[19,55,103],"works":[20],"well":[21],"when":[22],"using":[23],"a":[24,68,89,115,122,135,178],"single":[25],"ontology,":[26],"integrating":[27],"multiple":[28],"can":[30,39,182],"be":[31,183],"problematic,":[32],"as":[33,110],"they":[34],"developed":[36],"independently,":[37],"which":[38,197],"lead":[40],"incompatibilities.":[42],"The":[43],"Open":[44],"Biomedical":[47],"Ontologies":[48],"(OBO)":[49],"Foundry":[50],"was":[51,79,94],"created":[52],"address":[54],"by":[56,67,104],"facilitating":[57],"development,":[59],"harmonization,":[60],"application":[61],"sharing":[63],"ontologies,":[65,161],"guided":[66],"set":[69],"overarching":[71],"principles.":[72,173],"One":[73],"challenge":[74],"in":[75,88],"reaching":[76],"these":[77,153],"goals":[78,211],"that":[80,190],"OBO":[82,108,158,205],"principles":[83,109],"were":[84],"not":[85],"originally":[86],"encoded":[87],"precise":[90],"fashion,":[91],"interpretation":[93],"subjective.":[95],"Here,":[96],"we":[97,100],"show":[98],"how":[99,177],"have":[101,151],"addressed":[102],"formally":[105],"encoding":[106],"operational":[111],"rules":[112],"implementing":[114],"suite":[116,159],"automated":[118],"validation":[119],"checks":[120,154],"dashboard":[123],"for":[124,200],"objectively":[125],"evaluating":[126],"each":[127,131],"ontology's":[128],"compliance":[129],"with":[130,147],"principle.":[132],"This":[133],"entailed":[134],"substantial":[136],"effort":[137],"metadata":[140],"across":[141,155],"all":[142],"coordinate":[146],"individual":[148,165],"stakeholders.":[149],"We":[150],"applied":[152],"full":[157],"revealing":[162],"areas":[163],"where":[164],"require":[167],"changes":[168],"conform":[170],"our":[172],"Our":[174],"work":[175],"demonstrates":[176],"sizable,":[179],"federated":[180],"community":[181],"organized":[184],"evaluated":[186],"on":[187],"objective":[188],"criteria":[189],"help":[191],"improve":[192],"overall":[193,210],"quality":[194],"interoperability,":[196],"is":[198],"vital":[199],"sustenance":[202],"project":[206],"towards":[208],"making":[213],"Findable,":[215],"Accessible,":[216],"Interoperable,":[217],"Reusable":[219],"(FAIR).":[220],"Database":[221],"URL":[222],"http://obofoundry.org/.":[223]},"counts_by_year":[{"year":2026,"cited_by_count":19},{"year":2025,"cited_by_count":44},{"year":2024,"cited_by_count":52},{"year":2023,"cited_by_count":53},{"year":2022,"cited_by_count":30},{"year":2021,"cited_by_count":5},{"year":2020,"cited_by_count":1}],"updated_date":"2026-04-17T18:11:37.981687","created_date":"2021-06-22T00:00:00"}