{"id":"https://openalex.org/W2985948685","doi":"https://doi.org/10.1093/nar/gkz996","title":"Plant Reactome: a knowledgebase and resource for comparative pathway analysis","display_name":"Plant Reactome: a knowledgebase and resource for comparative pathway analysis","publication_year":2019,"publication_date":"2019-10-15","ids":{"openalex":"https://openalex.org/W2985948685","doi":"https://doi.org/10.1093/nar/gkz996","mag":"2985948685","pmid":"https://pubmed.ncbi.nlm.nih.gov/31680153"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkz996","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkz996","pdf_url":"https://academic.oup.com/nar/article-pdf/48/D1/D1093/31697958/gkz996.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/48/D1/D1093/31697958/gkz996.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5034396049","display_name":"Sushma Naithani","orcid":"https://orcid.org/0000-0001-7819-4552"},"institutions":[{"id":"https://openalex.org/I131249849","display_name":"Oregon State University","ror":"https://ror.org/00ysfqy60","country_code":"US","type":"education","lineage":["https://openalex.org/I131249849"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Sushma Naithani","raw_affiliation_strings":["Department of Botany & Plant Pathology, Oregon State University, Corvallis, OR, USA"],"affiliations":[{"raw_affiliation_string":"Department of Botany & Plant Pathology, Oregon State University, Corvallis, OR, USA","institution_ids":["https://openalex.org/I131249849"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054976266","display_name":"Parul Gupta","orcid":"https://orcid.org/0000-0002-0190-8753"},"institutions":[{"id":"https://openalex.org/I131249849","display_name":"Oregon State University","ror":"https://ror.org/00ysfqy60","country_code":"US","type":"education","lineage":["https://openalex.org/I131249849"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Parul Gupta","raw_affiliation_strings":["Department of Botany & Plant Pathology, Oregon State University, Corvallis, OR, USA"],"affiliations":[{"raw_affiliation_string":"Department of Botany & Plant Pathology, Oregon State University, Corvallis, OR, USA","institution_ids":["https://openalex.org/I131249849"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086541807","display_name":"Justin Preece","orcid":"https://orcid.org/0000-0001-5406-4905"},"institutions":[{"id":"https://openalex.org/I131249849","display_name":"Oregon State University","ror":"https://ror.org/00ysfqy60","country_code":"US","type":"education","lineage":["https://openalex.org/I131249849"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Justin Preece","raw_affiliation_strings":["Department of Botany & Plant Pathology, Oregon State University, Corvallis, OR, USA"],"affiliations":[{"raw_affiliation_string":"Department of Botany & Plant Pathology, Oregon State University, Corvallis, OR, USA","institution_ids":["https://openalex.org/I131249849"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074201106","display_name":"Peter D\u2019Eustachio","orcid":"https://orcid.org/0000-0002-5494-626X"},"institutions":[{"id":"https://openalex.org/I57206974","display_name":"New York University","ror":"https://ror.org/0190ak572","country_code":"US","type":"education","lineage":["https://openalex.org/I57206974"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Peter D\u2019Eustachio","raw_affiliation_strings":["NYU School of Medicine, New York, NY, USA"],"affiliations":[{"raw_affiliation_string":"NYU School of Medicine, New York, NY, USA","institution_ids":["https://openalex.org/I57206974"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037549619","display_name":"Justin Elser","orcid":"https://orcid.org/0000-0003-0921-1982"},"institutions":[{"id":"https://openalex.org/I131249849","display_name":"Oregon State University","ror":"https://ror.org/00ysfqy60","country_code":"US","type":"education","lineage":["https://openalex.org/I131249849"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Justin L Elser","raw_affiliation_strings":["Department of Botany & Plant Pathology, Oregon State University, Corvallis, OR, USA"],"affiliations":[{"raw_affiliation_string":"Department of Botany & Plant Pathology, Oregon State University, Corvallis, OR, USA","institution_ids":["https://openalex.org/I131249849"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101463738","display_name":"Priyanka Garg","orcid":"https://orcid.org/0009-0005-5107-0281"},"institutions":[{"id":"https://openalex.org/I131249849","display_name":"Oregon State University","ror":"https://ror.org/00ysfqy60","country_code":"US","type":"education","lineage":["https://openalex.org/I131249849"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Priyanka Garg","raw_affiliation_strings":["Department of Botany & Plant Pathology, Oregon State University, Corvallis, OR, USA"],"affiliations":[{"raw_affiliation_string":"Department of Botany & Plant Pathology, Oregon State University, Corvallis, OR, USA","institution_ids":["https://openalex.org/I131249849"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032241119","display_name":"Daemon Dikeman","orcid":"https://orcid.org/0000-0001-8644-2632"},"institutions":[{"id":"https://openalex.org/I131249849","display_name":"Oregon State University","ror":"https://ror.org/00ysfqy60","country_code":"US","type":"education","lineage":["https://openalex.org/I131249849"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Daemon A Dikeman","raw_affiliation_strings":["Department of Botany & Plant Pathology, Oregon State University, Corvallis, OR, USA"],"affiliations":[{"raw_affiliation_string":"Department of Botany & Plant Pathology, Oregon State University, Corvallis, OR, USA","institution_ids":["https://openalex.org/I131249849"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5069936017","display_name":"Jason Kiff","orcid":null},"institutions":[{"id":"https://openalex.org/I131249849","display_name":"Oregon State University","ror":"https://ror.org/00ysfqy60","country_code":"US","type":"education","lineage":["https://openalex.org/I131249849"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jason Kiff","raw_affiliation_strings":["Department of Botany & Plant Pathology, Oregon State University, Corvallis, OR, USA"],"affiliations":[{"raw_affiliation_string":"Department of Botany & Plant Pathology, Oregon State University, Corvallis, OR, USA","institution_ids":["https://openalex.org/I131249849"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026782519","display_name":"Justin Cook","orcid":"https://orcid.org/0000-0003-3457-2552"},"institutions":[{"id":"https://openalex.org/I112260969","display_name":"Ontario Institute for Cancer Research","ror":"https://ror.org/043q8yx54","country_code":"CA","type":"funder","lineage":["https://openalex.org/I112260969"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Justin Cook","raw_affiliation_strings":["Ontario Institute for Cancer Research, Toronto, ON, Canada"],"affiliations":[{"raw_affiliation_string":"Ontario Institute for Cancer Research, Toronto, ON, Canada","institution_ids":["https://openalex.org/I112260969"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089477212","display_name":"Andrew Olson","orcid":"https://orcid.org/0000-0003-4946-9021"},"institutions":[{"id":"https://openalex.org/I2750212522","display_name":"Cold Spring Harbor Laboratory","ror":"https://ror.org/02qz8b764","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I2750212522"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Andrew Olson","raw_affiliation_strings":["Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA"],"affiliations":[{"raw_affiliation_string":"Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA","institution_ids":["https://openalex.org/I2750212522"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067979067","display_name":"Sharon Wei","orcid":null},"institutions":[{"id":"https://openalex.org/I2750212522","display_name":"Cold Spring Harbor Laboratory","ror":"https://ror.org/02qz8b764","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I2750212522"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Sharon Wei","raw_affiliation_strings":["Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA"],"affiliations":[{"raw_affiliation_string":"Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA","institution_ids":["https://openalex.org/I2750212522"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074204283","display_name":"Marcela K Tello-Ruiz","orcid":"https://orcid.org/0000-0002-7499-5368"},"institutions":[{"id":"https://openalex.org/I2750212522","display_name":"Cold Spring Harbor Laboratory","ror":"https://ror.org/02qz8b764","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I2750212522"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Marcela K Tello-Ruiz","raw_affiliation_strings":["Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA"],"affiliations":[{"raw_affiliation_string":"Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA","institution_ids":["https://openalex.org/I2750212522"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017871846","display_name":"Antonio Fabregat","orcid":"https://orcid.org/0000-0002-3288-8599"},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Antonio Fabregat Mundo","raw_affiliation_strings":["European Molecular Biology Laboratory - European Bioinformatics Institute, Hinxton, UK"],"affiliations":[{"raw_affiliation_string":"European Molecular Biology Laboratory - European Bioinformatics Institute, Hinxton, UK","institution_ids":["https://openalex.org/I1303153112"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004715333","display_name":"Alfonso Mu\u00f1oz-Pomer Fuentes","orcid":"https://orcid.org/0000-0002-4054-6214"},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Alfonso Munoz-Pomer","raw_affiliation_strings":["European Molecular Biology Laboratory - European Bioinformatics Institute, Hinxton, UK"],"affiliations":[{"raw_affiliation_string":"European Molecular Biology Laboratory - European Bioinformatics Institute, Hinxton, UK","institution_ids":["https://openalex.org/I1303153112"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046977129","display_name":"Suhaib Mohammed","orcid":"https://orcid.org/0000-0003-1772-8690"},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Suhaib Mohammed","raw_affiliation_strings":["European Molecular Biology Laboratory - European Bioinformatics Institute, Hinxton, UK"],"affiliations":[{"raw_affiliation_string":"European Molecular Biology Laboratory - European Bioinformatics Institute, Hinxton, UK","institution_ids":["https://openalex.org/I1303153112"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5071322222","display_name":"Tiejun Cheng","orcid":"https://orcid.org/0000-0002-4486-3356"},"institutions":[{"id":"https://openalex.org/I1299303238","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238"]},{"id":"https://openalex.org/I4210109390","display_name":"National Center for Biotechnology Information","ror":"https://ror.org/02meqm098","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I2800548410","https://openalex.org/I4210109390"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Tiejun Cheng","raw_affiliation_strings":["National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD 20894, USA"],"affiliations":[{"raw_affiliation_string":"National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD 20894, USA","institution_ids":["https://openalex.org/I4210109390","https://openalex.org/I1299303238"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5015494748","display_name":"Evan Bolton","orcid":"https://orcid.org/0000-0002-5959-6190"},"institutions":[{"id":"https://openalex.org/I1299303238","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238"]},{"id":"https://openalex.org/I4210109390","display_name":"National Center for Biotechnology Information","ror":"https://ror.org/02meqm098","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I2800548410","https://openalex.org/I4210109390"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Evan Bolton","raw_affiliation_strings":["National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD 20894, USA"],"affiliations":[{"raw_affiliation_string":"National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD 20894, USA","institution_ids":["https://openalex.org/I4210109390","https://openalex.org/I1299303238"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027778199","display_name":"Irene Papatheodorou","orcid":"https://orcid.org/0000-0001-7270-5470"},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Irene Papatheodorou","raw_affiliation_strings":["European Molecular Biology Laboratory - European Bioinformatics Institute, Hinxton, UK"],"affiliations":[{"raw_affiliation_string":"European Molecular Biology Laboratory - European Bioinformatics Institute, Hinxton, UK","institution_ids":["https://openalex.org/I1303153112"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052076713","display_name":"Lincoln Stein","orcid":"https://orcid.org/0000-0002-1983-4588"},"institutions":[{"id":"https://openalex.org/I112260969","display_name":"Ontario Institute for Cancer Research","ror":"https://ror.org/043q8yx54","country_code":"CA","type":"funder","lineage":["https://openalex.org/I112260969"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Lincoln Stein","raw_affiliation_strings":["Ontario Institute for Cancer Research, Toronto, ON, Canada"],"affiliations":[{"raw_affiliation_string":"Ontario Institute for Cancer Research, Toronto, ON, Canada","institution_ids":["https://openalex.org/I112260969"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077105419","display_name":"Doreen Ware","orcid":"https://orcid.org/0000-0002-8125-3821"},"institutions":[{"id":"https://openalex.org/I4210142299","display_name":"Robert W. Holley Center for Agriculture & Health","ror":"https://ror.org/050z40a57","country_code":"US","type":"facility","lineage":["https://openalex.org/I1312222531","https://openalex.org/I1336096307","https://openalex.org/I4210138094","https://openalex.org/I4210142299"]},{"id":"https://openalex.org/I2750212522","display_name":"Cold Spring Harbor Laboratory","ror":"https://ror.org/02qz8b764","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I2750212522"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Doreen Ware","raw_affiliation_strings":["Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA","USDA-ARS, RW Holley Center for Agriculture & Health, Ithaca, NY, USA"],"affiliations":[{"raw_affiliation_string":"Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA","institution_ids":["https://openalex.org/I2750212522"]},{"raw_affiliation_string":"USDA-ARS, RW Holley Center for Agriculture & Health, Ithaca, NY, USA","institution_ids":["https://openalex.org/I4210142299"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5049418039","display_name":"Pankaj Jaiswal","orcid":"https://orcid.org/0000-0002-1005-8383"},"institutions":[{"id":"https://openalex.org/I131249849","display_name":"Oregon State University","ror":"https://ror.org/00ysfqy60","country_code":"US","type":"education","lineage":["https://openalex.org/I131249849"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Pankaj Jaiswal","raw_affiliation_strings":["Department of Botany & Plant Pathology, Oregon State University, Corvallis, OR, USA"],"affiliations":[{"raw_affiliation_string":"Department of Botany & Plant Pathology, Oregon State University, Corvallis, OR, USA","institution_ids":["https://openalex.org/I131249849"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":21,"corresponding_author_ids":["https://openalex.org/A5049418039"],"corresponding_institution_ids":["https://openalex.org/I131249849"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":4.5391,"has_fulltext":true,"cited_by_count":103,"citation_normalized_percentile":{"value":0.95754991,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":98,"max":100},"biblio":{"volume":"48","issue":"D1","first_page":"D1093","last_page":"D1103"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11882","display_name":"Plant biochemistry and biosynthesis","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11882","display_name":"Plant biochemistry and biosynthesis","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10252","display_name":"Microbial Natural Products and Biosynthesis","score":0.9983999729156494,"subfield":{"id":"https://openalex.org/subfields/2736","display_name":"Pharmacology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9966999888420105,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.9401201009750366},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5581291913986206},{"id":"https://openalex.org/keywords/resource","display_name":"Resource (disambiguation)","score":0.4875897765159607},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.37295228242874146},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.3334720730781555},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.10360124707221985}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.9401201009750366},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5581291913986206},{"id":"https://openalex.org/C206345919","wikidata":"https://www.wikidata.org/wiki/Q20380951","display_name":"Resource (disambiguation)","level":2,"score":0.4875897765159607},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.37295228242874146},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.3334720730781555},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.10360124707221985},{"id":"https://openalex.org/C31258907","wikidata":"https://www.wikidata.org/wiki/Q1301371","display_name":"Computer network","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010944","descriptor_name":"Plants","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D010944","descriptor_name":"Plants","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D010944","descriptor_name":"Plants","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D010944","descriptor_name":"Plants","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D010944","descriptor_name":"Plants","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D010944","descriptor_name":"Plants","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D010944","descriptor_name":"Plants","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D010944","descriptor_name":"Plants","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055432","descriptor_name":"Metabolomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D055432","descriptor_name":"Metabolomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D055432","descriptor_name":"Metabolomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D055432","descriptor_name":"Metabolomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D064878","descriptor_name":"Web Browser","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D064878","descriptor_name":"Web Browser","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D064878","descriptor_name":"Web Browser","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D064878","descriptor_name":"Web Browser","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/nar/gkz996","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkz996","pdf_url":"https://academic.oup.com/nar/article-pdf/48/D1/D1093/31697958/gkz996.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:31680153","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31680153","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:repository.cshl.edu:38702","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4306402288","display_name":"Cold Spring Harbor Laboratory Institutional Repository (Cold Spring Harbor Laboratory)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I2750212522","host_organization_name":"Cold Spring Harbor Laboratory","host_organization_lineage":["https://openalex.org/I2750212522"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":null,"raw_type":"PeerReviewed"},{"id":"pmh:oai:pubmedcentral.nih.gov:7145600","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7145600","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkz996","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkz996","pdf_url":"https://academic.oup.com/nar/article-pdf/48/D1/D1093/31697958/gkz996.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1549051233","display_name":null,"funder_award_id":"2019-67032-29072","funder_id":"https://openalex.org/F4320332299","funder_display_name":"National Institute of Food and Agriculture"},{"id":"https://openalex.org/G2064538194","display_name":null,"funder_award_id":"1743442","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G3678716737","display_name":null,"funder_award_id":"P41 HG003751","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G5828286889","display_name":null,"funder_award_id":"1340112","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G6257960709","display_name":null,"funder_award_id":"1127112","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G6730254669","display_name":null,"funder_award_id":"1U54GM114833-01","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320311401","display_name":"Oregon State University","ror":"https://ror.org/00ysfqy60"},{"id":"https://openalex.org/F4320313288","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52"},{"id":"https://openalex.org/F4320313290","display_name":"Ontario Institute for Cancer Research","ror":"https://ror.org/043q8yx54"},{"id":"https://openalex.org/F4320314202","display_name":"Cold Spring Harbor Laboratory","ror":"https://ror.org/02qz8b764"},{"id":"https://openalex.org/F4320314997","display_name":"Strong","ror":"https://ror.org/041vyzr56"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320332299","display_name":"National Institute of Food and Agriculture","ror":"https://ror.org/05qx3fv49"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2985948685.pdf","grobid_xml":"https://content.openalex.org/works/W2985948685.grobid-xml"},"referenced_works_count":55,"referenced_works":["https://openalex.org/W1539889048","https://openalex.org/W1935434993","https://openalex.org/W1979316294","https://openalex.org/W1989277387","https://openalex.org/W1999236770","https://openalex.org/W2043764521","https://openalex.org/W2089047063","https://openalex.org/W2093265063","https://openalex.org/W2101924832","https://openalex.org/W2108284180","https://openalex.org/W2110763841","https://openalex.org/W2122245399","https://openalex.org/W2130810176","https://openalex.org/W2136221868","https://openalex.org/W2136651963","https://openalex.org/W2141292707","https://openalex.org/W2150646520","https://openalex.org/W2154129128","https://openalex.org/W2159181928","https://openalex.org/W2161920970","https://openalex.org/W2167896636","https://openalex.org/W2168465568","https://openalex.org/W2179109865","https://openalex.org/W2224343643","https://openalex.org/W2227814076","https://openalex.org/W2260252849","https://openalex.org/W2292734588","https://openalex.org/W2418044989","https://openalex.org/W2438112042","https://openalex.org/W2474227261","https://openalex.org/W2545591455","https://openalex.org/W2549937192","https://openalex.org/W2562792762","https://openalex.org/W2589515024","https://openalex.org/W2626569399","https://openalex.org/W2768308516","https://openalex.org/W2769436351","https://openalex.org/W2769591387","https://openalex.org/W2786122698","https://openalex.org/W2891264165","https://openalex.org/W2891678595","https://openalex.org/W2898440040","https://openalex.org/W2899070097","https://openalex.org/W2899669628","https://openalex.org/W2909224061","https://openalex.org/W2910442120","https://openalex.org/W2912806568","https://openalex.org/W2988775587","https://openalex.org/W3025159719","https://openalex.org/W4233698560","https://openalex.org/W4236875018","https://openalex.org/W4249526157","https://openalex.org/W4251330949","https://openalex.org/W4251969446","https://openalex.org/W6685540066"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2082860237","https://openalex.org/W2119695867","https://openalex.org/W2130076355","https://openalex.org/W1990804418","https://openalex.org/W1993764875","https://openalex.org/W2046158694","https://openalex.org/W2788277189","https://openalex.org/W2013243191","https://openalex.org/W1971568933"],"abstract_inverted_index":{"Plant":[0,118],"Reactome":[1,42,119],"(https://plantreactome.gramene.org)":[2],"is":[3],"an":[4],"open-source,":[5],"comparative":[6],"plant":[7,35,64,71],"pathway":[8,30,96,109],"knowledgebase":[9],"of":[10,26],"the":[11,41,83,125],"Gramene":[12],"project.":[13],"It":[14,47],"uses":[15],"Oryza":[16],"sativa":[17],"(rice)":[18],"as":[19,82],"a":[20],"reference":[21,51],"species":[22,36],"for":[23],"manual":[24],"curation":[25,99,110],"pathways":[27,138],"and":[28,45,55,63,76,86,104,108,114,122,131,137,142],"extends":[29],"knowledge":[31],"to":[32,69,94,128,134],"another":[33],"82":[34],"via":[37],"gene-orthology":[38],"projection":[39],"using":[40],"data":[43,93,130],"model":[44],"framework.":[46],"currently":[48],"hosts":[49],"298":[50],"pathways,":[52,57,62,72],"including":[53],"metabolic":[54],"transport":[56],"transcriptional":[58],"networks,":[59],"hormone":[60],"signaling":[61],"developmental":[65],"processes.":[66],"In":[67],"addition":[68],"browsing":[70],"users":[73],"can":[74],"upload":[75],"analyze":[77],"their":[78],"omics":[79],"data,":[80,85],"such":[81],"gene-expression":[84],"overlay":[87],"curated":[88],"or":[89],"experimental":[90],"gene-gene":[91],"interaction":[92],"extend":[95],"knowledge.":[97],"The":[98,117],"team":[100],"actively":[101],"engages":[102],"researchers":[103],"students":[105],"on":[106],"gene":[107],"by":[111],"offering":[112],"workshops":[113],"online":[115],"tutorials.":[116],"supports,":[120],"implements":[121],"collaborates":[123],"with":[124],"wider":[126],"community":[127],"make":[129],"tools":[132],"related":[133],"genes,":[135],"genomes,":[136],"Findable,":[139],"Accessible,":[140],"Interoperable":[141],"Re-usable":[143],"(FAIR).":[144]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":11},{"year":2024,"cited_by_count":18},{"year":2023,"cited_by_count":19},{"year":2022,"cited_by_count":30},{"year":2021,"cited_by_count":17},{"year":2020,"cited_by_count":6}],"updated_date":"2026-03-10T16:38:18.471706","created_date":"2025-10-10T00:00:00"}