{"id":"https://openalex.org/W2998008364","doi":"https://doi.org/10.1093/nar/gkz989","title":"pathDIP 4: an extended pathway annotations and enrichment analysis resource for human, model organisms and domesticated species","display_name":"pathDIP 4: an extended pathway annotations and enrichment analysis resource for human, model organisms and domesticated species","publication_year":2019,"publication_date":"2019-11-13","ids":{"openalex":"https://openalex.org/W2998008364","doi":"https://doi.org/10.1093/nar/gkz989","mag":"2998008364","pmid":"https://pubmed.ncbi.nlm.nih.gov/31733064"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkz989","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkz989","pdf_url":"https://academic.oup.com/nar/article-pdf/48/D1/D479/31697701/gkz989.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/48/D1/D479/31697701/gkz989.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5088667484","display_name":"Sara Rahmati","orcid":"https://orcid.org/0000-0002-2009-4660"},"institutions":[{"id":"https://openalex.org/I1325899441","display_name":"University Health Network","ror":"https://ror.org/042xt5161","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I1325899441"]},{"id":"https://openalex.org/I4388446386","display_name":"Krembil Research Institute","ror":"https://ror.org/01f6jys10","country_code":null,"type":"facility","lineage":["https://openalex.org/I1325899441","https://openalex.org/I1325899441","https://openalex.org/I2799337515","https://openalex.org/I4388446386"]},{"id":"https://openalex.org/I130438778","display_name":"Memorial University of Newfoundland","ror":"https://ror.org/04haebc03","country_code":"CA","type":"education","lineage":["https://openalex.org/I130438778"]},{"id":"https://openalex.org/I2799337515","display_name":"Toronto Western Hospital","ror":"https://ror.org/03qv8yq19","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I1325899441","https://openalex.org/I2799337515"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Sara Rahmati","raw_affiliation_strings":["Department of Medicine, Memorial University of Newfoundland, Saint John's, NL A1B 3V6, Canada","Department of Medicine, Toronto Western Hospital, University Health Network, Toronto, ON M5T 2S8, Canada","Krembil Research Institute, University Health Network, Toronto, ON M5T 0S8, Canada"],"affiliations":[{"raw_affiliation_string":"Department of Medicine, Memorial University of Newfoundland, Saint John's, NL A1B 3V6, Canada","institution_ids":["https://openalex.org/I130438778"]},{"raw_affiliation_string":"Department of Medicine, Toronto Western Hospital, University Health Network, Toronto, ON M5T 2S8, Canada","institution_ids":["https://openalex.org/I1325899441","https://openalex.org/I2799337515"]},{"raw_affiliation_string":"Krembil Research Institute, University Health Network, Toronto, ON M5T 0S8, Canada","institution_ids":["https://openalex.org/I1325899441","https://openalex.org/I4388446386"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004328926","display_name":"Mark Abovsky","orcid":null},"institutions":[{"id":"https://openalex.org/I1325899441","display_name":"University Health Network","ror":"https://ror.org/042xt5161","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I1325899441"]},{"id":"https://openalex.org/I4388446386","display_name":"Krembil Research Institute","ror":"https://ror.org/01f6jys10","country_code":null,"type":"facility","lineage":["https://openalex.org/I1325899441","https://openalex.org/I1325899441","https://openalex.org/I2799337515","https://openalex.org/I4388446386"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Mark Abovsky","raw_affiliation_strings":["Krembil Research Institute, University Health Network, Toronto, ON M5T 0S8, Canada"],"affiliations":[{"raw_affiliation_string":"Krembil Research Institute, University Health Network, Toronto, ON M5T 0S8, Canada","institution_ids":["https://openalex.org/I1325899441","https://openalex.org/I4388446386"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5085732287","display_name":"Chiara Pastrello","orcid":"https://orcid.org/0000-0002-1934-7472"},"institutions":[{"id":"https://openalex.org/I1325899441","display_name":"University Health Network","ror":"https://ror.org/042xt5161","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I1325899441"]},{"id":"https://openalex.org/I4388446386","display_name":"Krembil Research Institute","ror":"https://ror.org/01f6jys10","country_code":null,"type":"facility","lineage":["https://openalex.org/I1325899441","https://openalex.org/I1325899441","https://openalex.org/I2799337515","https://openalex.org/I4388446386"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Chiara Pastrello","raw_affiliation_strings":["Krembil Research Institute, University Health Network, Toronto, ON M5T 0S8, Canada"],"affiliations":[{"raw_affiliation_string":"Krembil Research Institute, University Health Network, Toronto, ON M5T 0S8, Canada","institution_ids":["https://openalex.org/I1325899441","https://openalex.org/I4388446386"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038607647","display_name":"Max Kotlyar","orcid":"https://orcid.org/0000-0002-1111-8667"},"institutions":[{"id":"https://openalex.org/I1325899441","display_name":"University Health Network","ror":"https://ror.org/042xt5161","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I1325899441"]},{"id":"https://openalex.org/I4388446386","display_name":"Krembil Research Institute","ror":"https://ror.org/01f6jys10","country_code":null,"type":"facility","lineage":["https://openalex.org/I1325899441","https://openalex.org/I1325899441","https://openalex.org/I2799337515","https://openalex.org/I4388446386"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Max Kotlyar","raw_affiliation_strings":["Krembil Research Institute, University Health Network, Toronto, ON M5T 0S8, Canada"],"affiliations":[{"raw_affiliation_string":"Krembil Research Institute, University Health Network, Toronto, ON M5T 0S8, Canada","institution_ids":["https://openalex.org/I1325899441","https://openalex.org/I4388446386"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089244721","display_name":"Richard Lu","orcid":null},"institutions":[{"id":"https://openalex.org/I4388446386","display_name":"Krembil Research Institute","ror":"https://ror.org/01f6jys10","country_code":null,"type":"facility","lineage":["https://openalex.org/I1325899441","https://openalex.org/I1325899441","https://openalex.org/I2799337515","https://openalex.org/I4388446386"]},{"id":"https://openalex.org/I1325899441","display_name":"University Health Network","ror":"https://ror.org/042xt5161","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I1325899441"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Richard Lu","raw_affiliation_strings":["Krembil Research Institute, University Health Network, Toronto, ON M5T 0S8, Canada"],"affiliations":[{"raw_affiliation_string":"Krembil Research Institute, University Health Network, Toronto, ON M5T 0S8, Canada","institution_ids":["https://openalex.org/I1325899441","https://openalex.org/I4388446386"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5020979888","display_name":"Christian Cumbaa","orcid":null},"institutions":[{"id":"https://openalex.org/I4388446386","display_name":"Krembil Research Institute","ror":"https://ror.org/01f6jys10","country_code":null,"type":"facility","lineage":["https://openalex.org/I1325899441","https://openalex.org/I1325899441","https://openalex.org/I2799337515","https://openalex.org/I4388446386"]},{"id":"https://openalex.org/I1325899441","display_name":"University Health Network","ror":"https://ror.org/042xt5161","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I1325899441"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Christian A Cumbaa","raw_affiliation_strings":["Krembil Research Institute, University Health Network, Toronto, ON M5T 0S8, Canada"],"affiliations":[{"raw_affiliation_string":"Krembil Research Institute, University Health Network, Toronto, ON M5T 0S8, Canada","institution_ids":["https://openalex.org/I1325899441","https://openalex.org/I4388446386"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5065964920","display_name":"Proton Rahman","orcid":"https://orcid.org/0000-0002-4521-2029"},"institutions":[{"id":"https://openalex.org/I130438778","display_name":"Memorial University of Newfoundland","ror":"https://ror.org/04haebc03","country_code":"CA","type":"education","lineage":["https://openalex.org/I130438778"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Proton Rahman","raw_affiliation_strings":["Department of Medicine, Memorial University of Newfoundland, Saint John's, NL A1B 3V6, Canada"],"affiliations":[{"raw_affiliation_string":"Department of Medicine, Memorial University of Newfoundland, Saint John's, NL A1B 3V6, Canada","institution_ids":["https://openalex.org/I130438778"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076364548","display_name":"Vinod Chandran","orcid":"https://orcid.org/0000-0002-8297-0275"},"institutions":[{"id":"https://openalex.org/I130438778","display_name":"Memorial University of Newfoundland","ror":"https://ror.org/04haebc03","country_code":"CA","type":"education","lineage":["https://openalex.org/I130438778"]},{"id":"https://openalex.org/I185261750","display_name":"University of Toronto","ror":"https://ror.org/03dbr7087","country_code":"CA","type":"education","lineage":["https://openalex.org/I185261750"]},{"id":"https://openalex.org/I2799337515","display_name":"Toronto Western Hospital","ror":"https://ror.org/03qv8yq19","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I1325899441","https://openalex.org/I2799337515"]},{"id":"https://openalex.org/I1325899441","display_name":"University Health Network","ror":"https://ror.org/042xt5161","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I1325899441"]},{"id":"https://openalex.org/I4388446386","display_name":"Krembil Research Institute","ror":"https://ror.org/01f6jys10","country_code":null,"type":"facility","lineage":["https://openalex.org/I1325899441","https://openalex.org/I1325899441","https://openalex.org/I2799337515","https://openalex.org/I4388446386"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Vinod Chandran","raw_affiliation_strings":["Department of Laboratory Medicine and Pathobiology (LMP), Medicine, University of Toronto, Toronto, ON M5S 1A8, Canada","Department of Medicine, Division of Rheumatology, University of Toronto, Toronto, ON M5G 2C4, Canada","Department of Medicine, Memorial University of Newfoundland, Saint John's, NL A1B 3V6, Canada","Department of Medicine, Toronto Western Hospital, University Health Network, Toronto, ON M5T 2S8, Canada","Krembil Research Institute, University Health Network, Toronto, ON M5T 0S8, Canada","Institute of Medical Science, University of Toronto, Toronto, ON M5S 1A8, Canada"],"affiliations":[{"raw_affiliation_string":"Department of Laboratory Medicine and Pathobiology (LMP), Medicine, University of Toronto, Toronto, ON M5S 1A8, Canada","institution_ids":["https://openalex.org/I185261750"]},{"raw_affiliation_string":"Department of Medicine, Division of Rheumatology, University of Toronto, Toronto, ON M5G 2C4, Canada","institution_ids":["https://openalex.org/I185261750"]},{"raw_affiliation_string":"Department of Medicine, Memorial University of Newfoundland, Saint John's, NL A1B 3V6, Canada","institution_ids":["https://openalex.org/I130438778"]},{"raw_affiliation_string":"Department of Medicine, Toronto Western Hospital, University Health Network, Toronto, ON M5T 2S8, Canada","institution_ids":["https://openalex.org/I1325899441","https://openalex.org/I2799337515"]},{"raw_affiliation_string":"Krembil Research Institute, University Health Network, Toronto, ON M5T 0S8, Canada","institution_ids":["https://openalex.org/I1325899441","https://openalex.org/I4388446386"]},{"raw_affiliation_string":"Institute of Medical Science, University of Toronto, Toronto, ON M5S 1A8, Canada","institution_ids":["https://openalex.org/I185261750"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5055656807","display_name":"Igor Juri\u0161ica","orcid":"https://orcid.org/0000-0002-2507-946X"},"institutions":[{"id":"https://openalex.org/I185261750","display_name":"University of Toronto","ror":"https://ror.org/03dbr7087","country_code":"CA","type":"education","lineage":["https://openalex.org/I185261750"]},{"id":"https://openalex.org/I1325899441","display_name":"University Health Network","ror":"https://ror.org/042xt5161","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I1325899441"]},{"id":"https://openalex.org/I207624831","display_name":"Slovak Academy of Sciences","ror":"https://ror.org/03h7qq074","country_code":"SK","type":"funder","lineage":["https://openalex.org/I207624831"]},{"id":"https://openalex.org/I4210145572","display_name":"Institute of Neuroimmunology of the Slovak Academy of Sciences","ror":"https://ror.org/05c516317","country_code":"SK","type":"facility","lineage":["https://openalex.org/I207624831","https://openalex.org/I4210145572"]},{"id":"https://openalex.org/I4388446386","display_name":"Krembil Research Institute","ror":"https://ror.org/01f6jys10","country_code":null,"type":"facility","lineage":["https://openalex.org/I1325899441","https://openalex.org/I1325899441","https://openalex.org/I2799337515","https://openalex.org/I4388446386"]}],"countries":["CA","SK"],"is_corresponding":true,"raw_author_name":"Igor Jurisica","raw_affiliation_strings":["Department of Computer Science, University of Toronto, ON M5S 1A4, Canada","Department of Medical Biophysics, University of Toronto, ON M 5G 1L7, Canada","Institute of Neuroimmunology, Slovak Academy of Sciences, Bratislava, Slovakia","Krembil Research Institute, University Health Network, Toronto, ON M5T 0S8, Canada"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Toronto, ON M5S 1A4, Canada","institution_ids":["https://openalex.org/I185261750"]},{"raw_affiliation_string":"Department of Medical Biophysics, University of Toronto, ON M 5G 1L7, Canada","institution_ids":["https://openalex.org/I185261750"]},{"raw_affiliation_string":"Institute of Neuroimmunology, Slovak Academy of Sciences, Bratislava, Slovakia","institution_ids":["https://openalex.org/I4210145572","https://openalex.org/I207624831"]},{"raw_affiliation_string":"Krembil Research Institute, University Health Network, Toronto, ON M5T 0S8, Canada","institution_ids":["https://openalex.org/I1325899441","https://openalex.org/I4388446386"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":9,"corresponding_author_ids":["https://openalex.org/A5055656807"],"corresponding_institution_ids":["https://openalex.org/I1325899441","https://openalex.org/I185261750","https://openalex.org/I207624831","https://openalex.org/I4210145572","https://openalex.org/I4388446386"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":4.454,"has_fulltext":true,"cited_by_count":77,"citation_normalized_percentile":{"value":0.95646925,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":98,"max":100},"biblio":{"volume":"48","issue":"D1","first_page":"D479","last_page":"D488"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9950000047683716,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.9872999787330627,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.9619910717010498},{"id":"https://openalex.org/keywords/domestication","display_name":"Domestication","score":0.6919727921485901},{"id":"https://openalex.org/keywords/resource","display_name":"Resource (disambiguation)","score":0.523522138595581},{"id":"https://openalex.org/keywords/evolutionary-biology","display_name":"Evolutionary biology","score":0.5183930993080139},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.48531287908554077},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.40325266122817993},{"id":"https://openalex.org/keywords/ecology","display_name":"Ecology","score":0.3325392007827759}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.9619910717010498},{"id":"https://openalex.org/C134387633","wikidata":"https://www.wikidata.org/wiki/Q11395","display_name":"Domestication","level":2,"score":0.6919727921485901},{"id":"https://openalex.org/C206345919","wikidata":"https://www.wikidata.org/wiki/Q20380951","display_name":"Resource (disambiguation)","level":2,"score":0.523522138595581},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.5183930993080139},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.48531287908554077},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.40325266122817993},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.3325392007827759},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.0},{"id":"https://openalex.org/C31258907","wikidata":"https://www.wikidata.org/wiki/Q1301371","display_name":"Computer network","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000829","descriptor_name":"Animals, Domestic","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D000829","descriptor_name":"Animals, Domestic","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D000829","descriptor_name":"Animals, Domestic","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001947","descriptor_name":"Breeding","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D001947","descriptor_name":"Breeding","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D001947","descriptor_name":"Breeding","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D055432","descriptor_name":"Metabolomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D055432","descriptor_name":"Metabolomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D055432","descriptor_name":"Metabolomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D060066","descriptor_name":"Protein Interaction Maps","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D060066","descriptor_name":"Protein Interaction Maps","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D060066","descriptor_name":"Protein Interaction Maps","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/nar/gkz989","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkz989","pdf_url":"https://academic.oup.com/nar/article-pdf/48/D1/D479/31697701/gkz989.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:31733064","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31733064","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:7145646","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7145646","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkz989","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkz989","pdf_url":"https://academic.oup.com/nar/article-pdf/48/D1/D479/31697701/gkz989.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1641369808","display_name":null,"funder_award_id":"#2254","funder_id":"https://openalex.org/F4320334593","funder_display_name":"Natural Sciences and Engineering Research Council of Canada"},{"id":"https://openalex.org/G2165548363","display_name":null,"funder_award_id":"Canada","funder_id":"https://openalex.org/F4320334593","funder_display_name":"Natural Sciences and Engineering Research Council of Canada"},{"id":"https://openalex.org/G3713966831","display_name":null,"funder_award_id":"#30865","funder_id":"https://openalex.org/F4320319952","funder_display_name":"Canada Foundation for Innovation"},{"id":"https://openalex.org/G4457431195","display_name":null,"funder_award_id":"#34876","funder_id":"https://openalex.org/F4320313340","funder_display_name":"Ontario Research Foundation"},{"id":"https://openalex.org/G4511479209","display_name":null,"funder_award_id":"#225404","funder_id":"https://openalex.org/F4320319952","funder_display_name":"Canada Foundation for Innovation"},{"id":"https://openalex.org/G5639122495","display_name":null,"funder_award_id":"203475","funder_id":"https://openalex.org/F4320334593","funder_display_name":"Natural Sciences and Engineering Research Council of Canada"},{"id":"https://openalex.org/G6280225868","display_name":null,"funder_award_id":"#203475","funder_id":"https://openalex.org/F4320334593","funder_display_name":"Natural Sciences and Engineering Research Council of Canada"},{"id":"https://openalex.org/G6995474719","display_name":null,"funder_award_id":"NSERC #203475","funder_id":"https://openalex.org/F4320334593","funder_display_name":"Natural Sciences and Engineering Research Council of Canada"},{"id":"https://openalex.org/G7607657507","display_name":null,"funder_award_id":"781-19095-209843","funder_id":"https://openalex.org/F4320323028","funder_display_name":"Atlantic Canada Opportunities Agency"},{"id":"https://openalex.org/G8775693683","display_name":null,"funder_award_id":"# 781-19095-209843","funder_id":"https://openalex.org/F4320323028","funder_display_name":"Atlantic Canada Opportunities Agency"}],"funders":[{"id":"https://openalex.org/F4320307762","display_name":"International Business Machines Corporation","ror":"https://ror.org/05hh8d621"},{"id":"https://openalex.org/F4320313340","display_name":"Ontario Research Foundation","ror":null},{"id":"https://openalex.org/F4320319952","display_name":"Canada Foundation for Innovation","ror":"https://ror.org/000az4664"},{"id":"https://openalex.org/F4320323028","display_name":"Atlantic Canada Opportunities Agency","ror":"https://ror.org/03jp5g380"},{"id":"https://openalex.org/F4320334593","display_name":"Natural Sciences and Engineering Research Council of Canada","ror":"https://ror.org/01h531d29"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2998008364.pdf","grobid_xml":"https://content.openalex.org/works/W2998008364.grobid-xml"},"referenced_works_count":54,"referenced_works":["https://openalex.org/W893557411","https://openalex.org/W1566015281","https://openalex.org/W1894267660","https://openalex.org/W1969325859","https://openalex.org/W1982390234","https://openalex.org/W1989277387","https://openalex.org/W1997666231","https://openalex.org/W2016340588","https://openalex.org/W2028885917","https://openalex.org/W2036179692","https://openalex.org/W2045478141","https://openalex.org/W2053159006","https://openalex.org/W2063280109","https://openalex.org/W2082954333","https://openalex.org/W2089467986","https://openalex.org/W2090766471","https://openalex.org/W2096766502","https://openalex.org/W2105325784","https://openalex.org/W2110256992","https://openalex.org/W2110553827","https://openalex.org/W2125011914","https://openalex.org/W2125984976","https://openalex.org/W2128601422","https://openalex.org/W2133661153","https://openalex.org/W2135789424","https://openalex.org/W2138351249","https://openalex.org/W2139254860","https://openalex.org/W2139550340","https://openalex.org/W2163841023","https://openalex.org/W2171599819","https://openalex.org/W2172102555","https://openalex.org/W2172196250","https://openalex.org/W2206890303","https://openalex.org/W2269139557","https://openalex.org/W2509717357","https://openalex.org/W2537679995","https://openalex.org/W2558585189","https://openalex.org/W2767914218","https://openalex.org/W2768781242","https://openalex.org/W2769045700","https://openalex.org/W2793740776","https://openalex.org/W2803563092","https://openalex.org/W2899942534","https://openalex.org/W2917101543","https://openalex.org/W2922336319","https://openalex.org/W2922595903","https://openalex.org/W2949435632","https://openalex.org/W2955618831","https://openalex.org/W2969443468","https://openalex.org/W4230392683","https://openalex.org/W4233698560","https://openalex.org/W4242404314","https://openalex.org/W4250359879","https://openalex.org/W6767024967"],"related_works":["https://openalex.org/W2153696549","https://openalex.org/W2084160489","https://openalex.org/W4206001110","https://openalex.org/W3195678672","https://openalex.org/W3134153936","https://openalex.org/W2098810966","https://openalex.org/W2785596416","https://openalex.org/W1910920621","https://openalex.org/W1553011431","https://openalex.org/W2883041678"],"abstract_inverted_index":{"PathDIP":[0,12,147,199],"was":[1],"introduced":[2],"to":[3,39,122],"increase":[4],"proteome":[5,117],"coverage":[6,118],"of":[7,24,73,89,101,162],"literature-curated":[8,94],"human":[9,90],"pathway":[10,29,53,57,60,133,194],"databases.":[11,18],"4":[13,128,148,200],"now":[14,62],"integrates":[15,32],"24":[16],"major":[17],"To":[19,180],"further":[20],"reduce":[21],"the":[22,83,93,99,129],"number":[23],"proteins":[25,45,91],"with":[26,34,105],"no":[27],"curated":[28,47,81],"annotation,":[30],"pathDIP":[31,127],"pathways":[33,78,97,104,115],"physical":[35,42],"protein-protein":[36],"interactions":[37],"(PPIs)":[38],"predict":[40],"significant":[41],"associations":[43,107],"between":[44],"and":[46,67,76,138,154,160,166,178,187,196],"pathways.":[48,95,163],"For":[49],"human,":[50],"it":[51],"provides":[52],"annotations":[54,168],"for":[55,135,143,169,192],"5366":[56],"orphans.":[58],"Integrated":[59],"annotation":[61,195],"includes":[63],"six":[64],"model":[65],"organisms":[66,137],"ten":[68],"domesticated":[69],"animals.":[70],"A":[71],"total":[72],"6401":[74],"core":[75],"ortholog":[77],"have":[79],"been":[80],"from":[82,119],"literature":[84],"or":[85],"by":[86,156],"annotating":[87],"orthologs":[88],"in":[92,175],"Extended":[96,114],"are":[98,109,190],"result":[100],"combining":[102],"these":[103,136],"protein-pathway":[106],"that":[108],"predicted":[110],"using":[111],"organism-specific":[112],"PPIs.":[113],"expand":[116],"81":[120],"088":[121],"120":[123],"621":[124],"proteins,":[125],"making":[126],"largest":[130],"publicly":[131,202],"available":[132,191,203],"database":[134],"providing":[139],"a":[140],"necessary":[141],"platform":[142],"comprehensive":[144],"pathway-enrichment":[145],"analysis.":[146,198],"users":[149],"can":[150,172],"customize":[151],"their":[152],"search":[153],"analysis":[155],"selecting":[157],"organism,":[158],"identifier":[159],"subset":[161],"Enrichment":[164],"results":[165],"detailed":[167],"input":[170],"list":[171],"be":[173],"obtained":[174],"different":[176],"formats":[177],"views.":[179],"support":[181],"automated":[182],"bioinformatics":[183],"workflows,":[184],"Java,":[185],"R":[186],"Python":[188],"APIs":[189],"batch":[193],"enrichment":[197],"is":[201],"at":[204],"http://ophid.utoronto.ca/pathDIP.":[205]},"counts_by_year":[{"year":2025,"cited_by_count":9},{"year":2024,"cited_by_count":6},{"year":2023,"cited_by_count":10},{"year":2022,"cited_by_count":22},{"year":2021,"cited_by_count":16},{"year":2020,"cited_by_count":14}],"updated_date":"2026-03-16T09:10:04.655348","created_date":"2025-10-10T00:00:00"}
